RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 AEBP2Q6ZN18 517 aaPredicted RBP20.48■□□□□ 0.87
VMP1-204ENST00000587259 CHIC1Q5VXU3 224 aa19.48■□□□□ 0.71
VMP1-204ENST00000587259 NISCHQ9Y2I1 1504 aa19.46■□□□□ 0.71
VMP1-204ENST00000587259 ABCC9O60706 1549 aa17.78■□□□□ 0.44
VMP1-204ENST00000587259 CCDC180Q9P1Z9 1646 aa17.43■□□□□ 0.38
VMP1-204ENST00000587259 SENP3Q9H4L4 574 aaPredicted RBP17.38■□□□□ 0.37
VMP1-204ENST00000587259 PHF23Q9BUL5 403 aaPredicted RBP17.23■□□□□ 0.35
VMP1-204ENST00000587259 DNAJC5BQ9UF47 199 aa16.88■□□□□ 0.29
VMP1-204ENST00000587259 RB1CC1Q8TDY2 1594 aa16.71■□□□□ 0.27
VMP1-204ENST00000587259 DCAF8L2P0C7V8 631 aa16.63■□□□□ 0.25
VMP1-204ENST00000587259 PABPN1Q86U42 306 aaKnown RBP eCLIP16.58■□□□□ 0.24
VMP1-204ENST00000587259 NACADO15069 1562 aa16.54■□□□□ 0.24
VMP1-204ENST00000587259 UNC13AQ9UPW8 1703 aa16.39■□□□□ 0.21
VMP1-204ENST00000587259 BICRAQ9NZM4 1560 aa16.31■□□□□ 0.2
VMP1-204ENST00000587259 FOXD1Q16676 465 aa16.25■□□□□ 0.19
VMP1-204ENST00000587259 MYO15BQ96JP2 1530 aa16.19■□□□□ 0.18
VMP1-204ENST00000587259 ZCCHC6Q5VYS8 1495 aaKnown RBP16.09■□□□□ 0.17
VMP1-204ENST00000587259 SCRIBQ14160 1630 aa16.04■□□□□ 0.16
VMP1-204ENST00000587259 CC2D2AQ9P2K1 1620 aa15.99■□□□□ 0.15
VMP1-204ENST00000587259 CECR2Q9BXF3 1484 aa15.97■□□□□ 0.15
VMP1-204ENST00000587259 DCAF1Q9Y4B6 1507 aa15.95■□□□□ 0.14
VMP1-204ENST00000587259 EIF4G1Q04637 1599 aaKnown RBP15.9■□□□□ 0.14
VMP1-204ENST00000587259 SHROOM4Q9ULL8 1493 aa15.89■□□□□ 0.13
VMP1-204ENST00000587259 PLPPR3Q6T4P5 718 aa15.59■□□□□ 0.09
VMP1-204ENST00000587259 DNAJC5Q9H3Z4 198 aa15.49■□□□□ 0.07
VMP1-204ENST00000587259 NCAPD3P42695 1498 aa15.3■□□□□ 0.04
VMP1-204ENST00000587259 ERCC6Q03468 1493 aa15.3■□□□□ 0.04
VMP1-204ENST00000587259 PPP6R1Q9UPN7 881 aa15.3■□□□□ 0.04
VMP1-204ENST00000587259 ATAD2BQ9ULI0 1458 aa15.28■□□□□ 0.04
VMP1-204ENST00000587259 ADRA2BP18089 450 aa15.27■□□□□ 0.04
VMP1-204ENST00000587259 NESP48681 1621 aa15.25■□□□□ 0.03
VMP1-204ENST00000587259 CUX2O14529 1486 aa15.25■□□□□ 0.03
VMP1-204ENST00000587259 SMARCA4P51532 1647 aa15.21■□□□□ 0.03
VMP1-204ENST00000587259 PIAS4Q8N2W9 510 aaPredicted RBP15.2■□□□□ 0.02
VMP1-204ENST00000587259 SMARCA2P51531 1590 aa15.16■□□□□ 0.02
VMP1-204ENST00000587259 HMGXB3Q12766 1538 aa15.15■□□□□ 0.02
VMP1-204ENST00000587259 POTEDQ86YR6 584 aa15.13■□□□□ 0.01
VMP1-204ENST00000587259 BAZ1BQ9UIG0 1483 aaKnown RBP15.12■□□□□ 0.01
VMP1-204ENST00000587259 MSH5O43196 834 aa15.1■□□□□ 0.01
VMP1-204ENST00000587259 BAZ1AQ9NRL2 1556 aaPredicted RBP15.07■□□□□ 0
VMP1-204ENST00000587259 MROH2BQ7Z745 1585 aa15.06■□□□□ 0
VMP1-204ENST00000587259 THOC2Q8NI27 1593 aaKnown RBP15.03■□□□□ -0
VMP1-204ENST00000587259 PEG3Q9GZU2 1588 aa15□□□□□ -0.01
VMP1-204ENST00000587259 KIF21AQ7Z4S6 1674 aa14.98□□□□□ -0.01
VMP1-204ENST00000587259 LAMC3Q9Y6N6 1575 aa14.95□□□□□ -0.02
VMP1-204ENST00000587259 PDS5BQ9NTI5 1447 aa14.89□□□□□ -0.03
VMP1-204ENST00000587259 WIZO95785 1651 aa14.87□□□□□ -0.03
VMP1-204ENST00000587259 TRIM41Q8WV44 630 aa14.86□□□□□ -0.03
VMP1-204ENST00000587259 CADPSQ9ULU8 1353 aa14.85□□□□□ -0.03
VMP1-204ENST00000587259 MRC2Q9UBG0 1479 aa14.81□□□□□ -0.04
VMP1-204ENST00000587259 WDR62O43379 1518 aa14.76□□□□□ -0.05
VMP1-204ENST00000587259 CEP164Q9UPV0 1460 aa14.72□□□□□ -0.05
VMP1-204ENST00000587259 FANCD2Q9BXW9 1451 aa14.71□□□□□ -0.05
VMP1-204ENST00000587259 RSF1Q96T23 1441 aaPredicted RBP14.66□□□□□ -0.06
VMP1-204ENST00000587259 CFTRP13569 1480 aa14.64□□□□□ -0.07
VMP1-204ENST00000587259 URB2Q14146 1524 aaKnown RBP14.64□□□□□ -0.07
VMP1-204ENST00000587259 TOP2AP11388 1531 aaKnown RBP14.6□□□□□ -0.07
VMP1-204ENST00000587259 OSCARQ8IYS5 282 aa14.58□□□□□ -0.08
VMP1-204ENST00000587259 ZNF608Q9ULD9 1512 aaPredicted RBP14.51□□□□□ -0.09
VMP1-204ENST00000587259 CCDC88BA6NC98 1476 aa14.49□□□□□ -0.09
VMP1-204ENST00000587259 RIMBP3CA6NJZ7 1639 aa14.44□□□□□ -0.1
VMP1-204ENST00000587259 RIMBP3BA6NNM3 1639 aa14.44□□□□□ -0.1
VMP1-204ENST00000587259 RIMBP3Q9UFD9 1639 aa14.44□□□□□ -0.1
VMP1-204ENST00000587259 TOPBP1Q92547 1522 aa14.42□□□□□ -0.1
VMP1-204ENST00000587259 PRDM2Q13029 1718 aa14.42□□□□□ -0.1
VMP1-204ENST00000587259 IFT140Q96RY7 1462 aa14.41□□□□□ -0.1
VMP1-204ENST00000587259 ARHGEF11O15085 1522 aa14.37□□□□□ -0.11
VMP1-204ENST00000587259 EIF4G3O43432 1585 aaKnown RBP14.36□□□□□ -0.11
VMP1-204ENST00000587259 AQRO60306 1485 aaKnown RBP eCLIP14.36□□□□□ -0.11
VMP1-204ENST00000587259 CYB5RLQ6IPT4 315 aa14.33□□□□□ -0.12
VMP1-204ENST00000587259 DNMBPQ6XZF7 1577 aa14.31□□□□□ -0.12
VMP1-204ENST00000587259 FBLN2P98095 1184 aa14.31□□□□□ -0.12
VMP1-204ENST00000587259 TARBP1Q13395 1621 aaKnown RBP14.29□□□□□ -0.12
VMP1-204ENST00000587259 CHD1O14646 1710 aa14.29□□□□□ -0.12
VMP1-204ENST00000587259 RAD54L2Q9Y4B4 1467 aa14.28□□□□□ -0.12
VMP1-204ENST00000587259 POLA1P09884 1462 aaPredicted RBP14.26□□□□□ -0.13
VMP1-204ENST00000587259 ABCC8Q09428 1581 aa14.26□□□□□ -0.13
VMP1-204ENST00000587259 TDRD9Q8NDG6 1382 aaKnown RBP14.25□□□□□ -0.13
VMP1-204ENST00000587259 ARAP1Q96P48 1450 aa14.25□□□□□ -0.13
VMP1-204ENST00000587259 TRHP20396 242 aaPredicted RBP14.22□□□□□ -0.13
VMP1-204ENST00000587259 SOGA1O94964 1423 aa14.2□□□□□ -0.14
VMP1-204ENST00000587259 SNAPC4Q5SXM2 1469 aa14.18□□□□□ -0.14
VMP1-204ENST00000587259 FGD5Q6ZNL6 1462 aa14.17□□□□□ -0.14
VMP1-204ENST00000587259 CUX1P39880 1505 aa14.15□□□□□ -0.14
VMP1-204ENST00000587259 CHMP7Q8WUX9 453 aaPredicted RBP14.11□□□□□ -0.15
VMP1-204ENST00000587259 CLASP1Q7Z460 1538 aa14.1□□□□□ -0.15
VMP1-204ENST00000587259 GRIN2BQ13224 1484 aa14.06□□□□□ -0.16
VMP1-204ENST00000587259 MAGI1Q96QZ7 1491 aaPredicted RBP14.04□□□□□ -0.16
VMP1-204ENST00000587259 SYNJ1O43426 1573 aa14.04□□□□□ -0.16
VMP1-204ENST00000587259 MAPK8IP2Q13387 824 aaPredicted RBP14.03□□□□□ -0.16
VMP1-204ENST00000587259 SYNJ2O15056 1496 aa14.03□□□□□ -0.16
VMP1-204ENST00000587259 WDR97A6NE52 1622 aa14.02□□□□□ -0.16
VMP1-204ENST00000587259 PBRM1Q86U86 1689 aa14.01□□□□□ -0.17
VMP1-204ENST00000587259 GAPVD1Q14C86 1478 aa14□□□□□ -0.17
VMP1-204ENST00000587259 SUPT5HO00267 1087 aaKnown RBP14□□□□□ -0.17
VMP1-204ENST00000587259 ERCC6L2Q5T890 1561 aa13.97□□□□□ -0.17
VMP1-204ENST00000587259 ABCA5Q8WWZ7 1642 aa13.95□□□□□ -0.18
VMP1-204ENST00000587259 ABCA10Q8WWZ4 1543 aa13.95□□□□□ -0.18
VMP1-204ENST00000587259 GRIN2AQ12879 1464 aa13.9□□□□□ -0.18
VMP1-204ENST00000587259 CEP170Q5SW79 1584 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms