RNA–Protein interactions for RNA: ENST00000587215.1

PKN1-209, Transcript of protein kinase N1, humanhuman

TSL 3

Gene PKN1, Length 363 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKN1-209ENST00000587215 NISCHQ9Y2I1 1504 aa41.23■■■■■ 4.19
PKN1-209ENST00000587215 CCDC180Q9P1Z9 1646 aa36.8■■■■□ 3.48
PKN1-209ENST00000587215 ABCC9O60706 1549 aa36.7■■■■□ 3.47
PKN1-209ENST00000587215 RB1CC1Q8TDY2 1594 aa34.97■■■■□ 3.19
PKN1-209ENST00000587215 NACADO15069 1562 aa34.8■■■■□ 3.16
PKN1-209ENST00000587215 DCAF8L2P0C7V8 631 aa34.8■■■■□ 3.16
PKN1-209ENST00000587215 MYO15BQ96JP2 1530 aa34.4■■■■□ 3.1
PKN1-209ENST00000587215 DNAJC5BQ9UF47 199 aa34.38■■■■□ 3.09
PKN1-209ENST00000587215 PABPN1Q86U42 306 aaKnown RBP eCLIP34.29■■■■□ 3.08
PKN1-209ENST00000587215 ZCCHC6Q5VYS8 1495 aaKnown RBP34.19■■■■□ 3.06
PKN1-209ENST00000587215 UNC13AQ9UPW8 1703 aa34.16■■■■□ 3.06
PKN1-209ENST00000587215 DCAF1Q9Y4B6 1507 aa34.04■■■■□ 3.04
PKN1-209ENST00000587215 BICRAQ9NZM4 1560 aa34■■■■□ 3.03
PKN1-209ENST00000587215 SCRIBQ14160 1630 aa33.59■■■□□ 2.97
PKN1-209ENST00000587215 SHROOM4Q9ULL8 1493 aa33.48■■■□□ 2.95
PKN1-209ENST00000587215 CC2D2AQ9P2K1 1620 aa33.13■■■□□ 2.89
PKN1-209ENST00000587215 EIF4G1Q04637 1599 aaKnown RBP33.12■■■□□ 2.89
PKN1-209ENST00000587215 CECR2Q9BXF3 1484 aa33.04■■■□□ 2.88
PKN1-209ENST00000587215 NCAPD3P42695 1498 aa32.19■■■□□ 2.74
PKN1-209ENST00000587215 ATAD2BQ9ULI0 1458 aa32.11■■■□□ 2.73
PKN1-209ENST00000587215 SMARCA4P51532 1647 aa32.07■■■□□ 2.72
PKN1-209ENST00000587215 SMARCA2P51531 1590 aa31.97■■■□□ 2.71
PKN1-209ENST00000587215 BAZ1AQ9NRL2 1556 aaPredicted RBP31.94■■■□□ 2.7
PKN1-209ENST00000587215 HMGXB3Q12766 1538 aa31.89■■■□□ 2.7
PKN1-209ENST00000587215 MROH2BQ7Z745 1585 aa31.78■■■□□ 2.68
PKN1-209ENST00000587215 PEG3Q9GZU2 1588 aa31.77■■■□□ 2.68
PKN1-209ENST00000587215 BAZ1BQ9UIG0 1483 aaKnown RBP31.77■■■□□ 2.68
PKN1-209ENST00000587215 ERCC6Q03468 1493 aa31.62■■■□□ 2.65
PKN1-209ENST00000587215 NESP48681 1621 aa31.6■■■□□ 2.65
PKN1-209ENST00000587215 CUX2O14529 1486 aa31.5■■■□□ 2.63
PKN1-209ENST00000587215 WIZO95785 1651 aa31.38■■■□□ 2.61
PKN1-209ENST00000587215 DNAJC5Q9H3Z4 198 aa31.37■■■□□ 2.61
PKN1-209ENST00000587215 LAMC3Q9Y6N6 1575 aa31.36■■■□□ 2.61
PKN1-209ENST00000587215 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
PKN1-209ENST00000587215 CADPSQ9ULU8 1353 aa31.23■■■□□ 2.59
PKN1-209ENST00000587215 PDS5BQ9NTI5 1447 aa31.21■■■□□ 2.59
PKN1-209ENST00000587215 THOC2Q8NI27 1593 aaKnown RBP31.17■■■□□ 2.58
PKN1-209ENST00000587215 KIF21AQ7Z4S6 1674 aa31.13■■■□□ 2.57
PKN1-209ENST00000587215 TOP2AP11388 1531 aaKnown RBP30.98■■■□□ 2.55
PKN1-209ENST00000587215 CFTRP13569 1480 aa30.9■■■□□ 2.54
PKN1-209ENST00000587215 MRC2Q9UBG0 1479 aa30.9■■■□□ 2.54
PKN1-209ENST00000587215 FANCD2Q9BXW9 1451 aa30.83■■■□□ 2.53
PKN1-209ENST00000587215 WDR62O43379 1518 aa30.81■■■□□ 2.52
PKN1-209ENST00000587215 CEP164Q9UPV0 1460 aa30.81■■■□□ 2.52
PKN1-209ENST00000587215 CCDC88BA6NC98 1476 aa30.7■■■□□ 2.51
PKN1-209ENST00000587215 URB2Q14146 1524 aaKnown RBP30.57■■■□□ 2.49
PKN1-209ENST00000587215 PRDM2Q13029 1718 aa30.46■■■□□ 2.47
PKN1-209ENST00000587215 TOPBP1Q92547 1522 aa30.27■■■□□ 2.44
PKN1-209ENST00000587215 ABCC8Q09428 1581 aa30.21■■■□□ 2.43
PKN1-209ENST00000587215 IFT140Q96RY7 1462 aa30.21■■■□□ 2.43
PKN1-209ENST00000587215 OSCARQ8IYS5 282 aa30.21■■■□□ 2.43
PKN1-209ENST00000587215 ZNF608Q9ULD9 1512 aaPredicted RBP30.18■■■□□ 2.42
PKN1-209ENST00000587215 DNMBPQ6XZF7 1577 aa30.14■■■□□ 2.42
PKN1-209ENST00000587215 TRIM41Q8WV44 630 aa30.05■■■□□ 2.4
PKN1-209ENST00000587215 SUPT5HO00267 1087 aaKnown RBP30.04■■■□□ 2.4
PKN1-209ENST00000587215 TARBP1Q13395 1621 aaKnown RBP29.98■■■□□ 2.39
PKN1-209ENST00000587215 POLA1P09884 1462 aaPredicted RBP29.98■■■□□ 2.39
PKN1-209ENST00000587215 AQRO60306 1485 aaKnown RBP eCLIP29.96■■■□□ 2.39
PKN1-209ENST00000587215 EIF4G3O43432 1585 aaKnown RBP29.94■■■□□ 2.38
PKN1-209ENST00000587215 RAD54L2Q9Y4B4 1467 aa29.9■■■□□ 2.38
PKN1-209ENST00000587215 SOGA1O94964 1423 aa29.88■■■□□ 2.37
PKN1-209ENST00000587215 CUX1P39880 1505 aa29.83■■■□□ 2.37
PKN1-209ENST00000587215 FGD5Q6ZNL6 1462 aa29.81■■■□□ 2.36
PKN1-209ENST00000587215 TDRD9Q8NDG6 1382 aaKnown RBP29.81■■■□□ 2.36
PKN1-209ENST00000587215 FBLN2P98095 1184 aa29.72■■■□□ 2.35
PKN1-209ENST00000587215 RIMBP3CA6NJZ7 1639 aa29.68■■■□□ 2.34
PKN1-209ENST00000587215 RIMBP3BA6NNM3 1639 aa29.68■■■□□ 2.34
PKN1-209ENST00000587215 RIMBP3Q9UFD9 1639 aa29.68■■■□□ 2.34
PKN1-209ENST00000587215 CHD1O14646 1710 aa29.66■■■□□ 2.34
PKN1-209ENST00000587215 ARHGEF11O15085 1522 aa29.63■■■□□ 2.33
PKN1-209ENST00000587215 WDR97A6NE52 1622 aa29.62■■■□□ 2.33
PKN1-209ENST00000587215 SNAPC4Q5SXM2 1469 aa29.6■■■□□ 2.33
PKN1-209ENST00000587215 GRIN2BQ13224 1484 aa29.55■■■□□ 2.32
PKN1-209ENST00000587215 CHMP7Q8WUX9 453 aaPredicted RBP29.54■■■□□ 2.32
PKN1-209ENST00000587215 MAGI1Q96QZ7 1491 aaPredicted RBP29.51■■■□□ 2.31
PKN1-209ENST00000587215 CYB5RLQ6IPT4 315 aa29.5■■■□□ 2.31
PKN1-209ENST00000587215 ABCA10Q8WWZ4 1543 aa29.5■■■□□ 2.31
PKN1-209ENST00000587215 GAPVD1Q14C86 1478 aa29.49■■■□□ 2.31
PKN1-209ENST00000587215 WRNQ14191 1432 aaPredicted RBP eCLIP29.43■■■□□ 2.3
PKN1-209ENST00000587215 SYNJ2O15056 1496 aa29.42■■■□□ 2.3
PKN1-209ENST00000587215 TOP2BQ02880 1626 aa29.38■■■□□ 2.29
PKN1-209ENST00000587215 ABCA5Q8WWZ7 1642 aa29.38■■■□□ 2.29
PKN1-209ENST00000587215 PBRM1Q86U86 1689 aa29.37■■■□□ 2.29
PKN1-209ENST00000587215 CLASP1Q7Z460 1538 aa29.37■■■□□ 2.29
PKN1-209ENST00000587215 ARAP1Q96P48 1450 aa29.36■■■□□ 2.29
PKN1-209ENST00000587215 SYNJ1O43426 1573 aa29.36■■■□□ 2.29
PKN1-209ENST00000587215 BIVM-ERCC5R4GMW8 1640 aa29.36■■■□□ 2.29
PKN1-209ENST00000587215 GRIN2AQ12879 1464 aa29.17■■■□□ 2.26
PKN1-209ENST00000587215 ADAMTS12P58397 1594 aa29.13■■■□□ 2.25
PKN1-209ENST00000587215 FHAD1B1AJZ9 1412 aa29.12■■■□□ 2.25
PKN1-209ENST00000587215 ERICH3Q5RHP9 1530 aa29.1■■■□□ 2.25
PKN1-209ENST00000587215 NUP160Q12769 1436 aa29.09■■■□□ 2.25
PKN1-209ENST00000587215 TRHP20396 242 aaPredicted RBP29.06■■■□□ 2.24
PKN1-209ENST00000587215 CEP170Q5SW79 1584 aa29.05■■■□□ 2.24
PKN1-209ENST00000587215 ERCC6L2Q5T890 1561 aa28.97■■■□□ 2.23
PKN1-209ENST00000587215 IGF1RP08069 1367 aa28.89■■■□□ 2.22
PKN1-209ENST00000587215 SHROOM2Q13796 1616 aa28.89■■■□□ 2.22
PKN1-209ENST00000587215 JPH4Q96JJ6 628 aa28.87■■■□□ 2.21
PKN1-209ENST00000587215 KIF27Q86VH2 1401 aa28.85■■■□□ 2.21
PKN1-209ENST00000587215 PRG4Q92954 1404 aaPredicted RBP28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms