RNA–Protein interactions for RNA: ENST00000587147.1

VAT1-204, Transcript of vesicle amine transport 1, humanhuman

TSL 2

Gene VAT1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1-204ENST00000587147 NISCHQ9Y2I1 1504 aa41.03■■■■■ 4.16
VAT1-204ENST00000587147 CCDC180Q9P1Z9 1646 aa36.56■■■■□ 3.44
VAT1-204ENST00000587147 ABCC9O60706 1549 aa35.43■■■■□ 3.26
VAT1-204ENST00000587147 NACADO15069 1562 aa34.32■■■■□ 3.08
VAT1-204ENST00000587147 RB1CC1Q8TDY2 1594 aa34.31■■■■□ 3.08
VAT1-204ENST00000587147 MYO15BQ96JP2 1530 aa34.25■■■■□ 3.07
VAT1-204ENST00000587147 ZCCHC6Q5VYS8 1495 aaKnown RBP34.21■■■■□ 3.07
VAT1-204ENST00000587147 DCAF1Q9Y4B6 1507 aa34.09■■■■□ 3.05
VAT1-204ENST00000587147 DCAF8L2P0C7V8 631 aa33.99■■■■□ 3.03
VAT1-204ENST00000587147 UNC13AQ9UPW8 1703 aa33.46■■■□□ 2.95
VAT1-204ENST00000587147 BICRAQ9NZM4 1560 aa33.2■■■□□ 2.91
VAT1-204ENST00000587147 SCRIBQ14160 1630 aa33.16■■■□□ 2.9
VAT1-204ENST00000587147 SHROOM4Q9ULL8 1493 aa33.08■■■□□ 2.89
VAT1-204ENST00000587147 PABPN1Q86U42 306 aaKnown RBP eCLIP33.05■■■□□ 2.88
VAT1-204ENST00000587147 DNAJC5BQ9UF47 199 aa32.37■■■□□ 2.77
VAT1-204ENST00000587147 EIF4G1Q04637 1599 aaKnown RBP32.33■■■□□ 2.77
VAT1-204ENST00000587147 CC2D2AQ9P2K1 1620 aa32.15■■■□□ 2.74
VAT1-204ENST00000587147 CECR2Q9BXF3 1484 aa31.91■■■□□ 2.7
VAT1-204ENST00000587147 BAZ1AQ9NRL2 1556 aaPredicted RBP31.84■■■□□ 2.69
VAT1-204ENST00000587147 SMARCA4P51532 1647 aa31.82■■■□□ 2.68
VAT1-204ENST00000587147 SMARCA2P51531 1590 aa31.65■■■□□ 2.66
VAT1-204ENST00000587147 NCAPD3P42695 1498 aa31.63■■■□□ 2.65
VAT1-204ENST00000587147 PEG3Q9GZU2 1588 aa31.6■■■□□ 2.65
VAT1-204ENST00000587147 ATAD2BQ9ULI0 1458 aa31.6■■■□□ 2.65
VAT1-204ENST00000587147 MROH2BQ7Z745 1585 aa31.54■■■□□ 2.64
VAT1-204ENST00000587147 HMGXB3Q12766 1538 aa31.52■■■□□ 2.64
VAT1-204ENST00000587147 BAZ1BQ9UIG0 1483 aaKnown RBP31.35■■■□□ 2.61
VAT1-204ENST00000587147 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
VAT1-204ENST00000587147 WIZO95785 1651 aa31.19■■■□□ 2.58
VAT1-204ENST00000587147 TOP2AP11388 1531 aaKnown RBP30.97■■■□□ 2.55
VAT1-204ENST00000587147 LAMC3Q9Y6N6 1575 aa30.81■■■□□ 2.52
VAT1-204ENST00000587147 NESP48681 1621 aa30.68■■■□□ 2.5
VAT1-204ENST00000587147 CADPSQ9ULU8 1353 aa30.67■■■□□ 2.5
VAT1-204ENST00000587147 ERCC6Q03468 1493 aa30.6■■■□□ 2.49
VAT1-204ENST00000587147 PDS5BQ9NTI5 1447 aa30.56■■■□□ 2.48
VAT1-204ENST00000587147 CFTRP13569 1480 aa30.54■■■□□ 2.48
VAT1-204ENST00000587147 CCDC88BA6NC98 1476 aa30.53■■■□□ 2.48
VAT1-204ENST00000587147 KIF21AQ7Z4S6 1674 aa30.4■■■□□ 2.46
VAT1-204ENST00000587147 PRDM2Q13029 1718 aa30.37■■■□□ 2.45
VAT1-204ENST00000587147 CUX2O14529 1486 aa30.37■■■□□ 2.45
VAT1-204ENST00000587147 SUPT5HO00267 1087 aaKnown RBP30.33■■■□□ 2.45
VAT1-204ENST00000587147 THOC2Q8NI27 1593 aaKnown RBP30.32■■■□□ 2.45
VAT1-204ENST00000587147 FANCD2Q9BXW9 1451 aa30.29■■■□□ 2.44
VAT1-204ENST00000587147 CEP164Q9UPV0 1460 aa30.27■■■□□ 2.44
VAT1-204ENST00000587147 MRC2Q9UBG0 1479 aa30.22■■■□□ 2.43
VAT1-204ENST00000587147 WDR62O43379 1518 aa30.15■■■□□ 2.42
VAT1-204ENST00000587147 URB2Q14146 1524 aaKnown RBP29.96■■■□□ 2.39
VAT1-204ENST00000587147 ABCC8Q09428 1581 aa29.95■■■□□ 2.39
VAT1-204ENST00000587147 DNMBPQ6XZF7 1577 aa29.85■■■□□ 2.37
VAT1-204ENST00000587147 TOPBP1Q92547 1522 aa29.82■■■□□ 2.36
VAT1-204ENST00000587147 IFT140Q96RY7 1462 aa29.67■■■□□ 2.34
VAT1-204ENST00000587147 CUX1P39880 1505 aa29.61■■■□□ 2.33
VAT1-204ENST00000587147 POLA1P09884 1462 aaPredicted RBP29.57■■■□□ 2.32
VAT1-204ENST00000587147 TARBP1Q13395 1621 aaKnown RBP29.53■■■□□ 2.32
VAT1-204ENST00000587147 FGD5Q6ZNL6 1462 aa29.49■■■□□ 2.31
VAT1-204ENST00000587147 WRNQ14191 1432 aaPredicted RBP eCLIP29.47■■■□□ 2.31
VAT1-204ENST00000587147 WDR97A6NE52 1622 aa29.45■■■□□ 2.31
VAT1-204ENST00000587147 BIVM-ERCC5R4GMW8 1640 aa29.45■■■□□ 2.31
VAT1-204ENST00000587147 TOP2BQ02880 1626 aa29.45■■■□□ 2.3
VAT1-204ENST00000587147 SOGA1O94964 1423 aa29.44■■■□□ 2.3
VAT1-204ENST00000587147 ZNF608Q9ULD9 1512 aaPredicted RBP29.4■■■□□ 2.3
VAT1-204ENST00000587147 EIF4G3O43432 1585 aaKnown RBP29.37■■■□□ 2.29
VAT1-204ENST00000587147 SYNJ1O43426 1573 aa29.36■■■□□ 2.29
VAT1-204ENST00000587147 RAD54L2Q9Y4B4 1467 aa29.36■■■□□ 2.29
VAT1-204ENST00000587147 ABCA10Q8WWZ4 1543 aa29.29■■■□□ 2.28
VAT1-204ENST00000587147 AQRO60306 1485 aaKnown RBP eCLIP29.23■■■□□ 2.274e-10■■■■■ 30.5
VAT1-204ENST00000587147 DNAJC5Q9H3Z4 198 aa29.23■■■□□ 2.27
VAT1-204ENST00000587147 TDRD9Q8NDG6 1382 aaKnown RBP29.19■■■□□ 2.26
VAT1-204ENST00000587147 ABCA5Q8WWZ7 1642 aa29.16■■■□□ 2.26
VAT1-204ENST00000587147 GRIN2BQ13224 1484 aa29.14■■■□□ 2.26
VAT1-204ENST00000587147 GAPVD1Q14C86 1478 aa29.12■■■□□ 2.25
VAT1-204ENST00000587147 MAGI1Q96QZ7 1491 aaPredicted RBP29.1■■■□□ 2.25
VAT1-204ENST00000587147 PBRM1Q86U86 1689 aa29.07■■■□□ 2.24
VAT1-204ENST00000587147 OSCARQ8IYS5 282 aa29.03■■■□□ 2.24
VAT1-204ENST00000587147 SNAPC4Q5SXM2 1469 aa29.02■■■□□ 2.24
VAT1-204ENST00000587147 ERICH3Q5RHP9 1530 aa28.97■■■□□ 2.23
VAT1-204ENST00000587147 CHD1O14646 1710 aa28.96■■■□□ 2.23
VAT1-204ENST00000587147 SYNJ2O15056 1496 aa28.95■■■□□ 2.22
VAT1-204ENST00000587147 KIF27Q86VH2 1401 aa28.87■■■□□ 2.21
VAT1-204ENST00000587147 ADAMTS12P58397 1594 aa28.85■■■□□ 2.21
VAT1-204ENST00000587147 CHMP7Q8WUX9 453 aaPredicted RBP28.84■■■□□ 2.21
VAT1-204ENST00000587147 FHAD1B1AJZ9 1412 aa28.82■■■□□ 2.2
VAT1-204ENST00000587147 FBLN2P98095 1184 aa28.81■■■□□ 2.2
VAT1-204ENST00000587147 TRIM41Q8WV44 630 aa28.75■■■□□ 2.19
VAT1-204ENST00000587147 GRIN2AQ12879 1464 aa28.74■■■□□ 2.19
VAT1-204ENST00000587147 CUL7Q14999 1698 aa28.73■■■□□ 2.19
VAT1-204ENST00000587147 CLASP1Q7Z460 1538 aa28.7■■■□□ 2.19
VAT1-204ENST00000587147 IGF1RP08069 1367 aa28.7■■■□□ 2.18
VAT1-204ENST00000587147 NUP160Q12769 1436 aa28.64■■■□□ 2.18
VAT1-204ENST00000587147 ARHGEF11O15085 1522 aa28.56■■■□□ 2.16
VAT1-204ENST00000587147 CEP170Q5SW79 1584 aa28.56■■■□□ 2.16
VAT1-204ENST00000587147 RIMBP3CA6NJZ7 1639 aa28.54■■■□□ 2.16
VAT1-204ENST00000587147 RIMBP3BA6NNM3 1639 aa28.54■■■□□ 2.16
VAT1-204ENST00000587147 RIMBP3Q9UFD9 1639 aa28.54■■■□□ 2.16
VAT1-204ENST00000587147 CARMIL1Q5VZK9 1371 aa28.53■■■□□ 2.16
VAT1-204ENST00000587147 RUSC2Q8N2Y8 1516 aa28.48■■■□□ 2.15
VAT1-204ENST00000587147 EEA1Q15075 1411 aa28.46■■■□□ 2.15
VAT1-204ENST00000587147 SHROOM2Q13796 1616 aa28.44■■■□□ 2.14
VAT1-204ENST00000587147 CHIC1Q5VXU3 224 aa28.43■■■□□ 2.14
VAT1-204ENST00000587147 RAPGEF2Q9Y4G8 1499 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms