RNA–Protein interactions for RNA: ENST00000587062.1

VAT1-203, Transcript of vesicle amine transport 1, humanhuman

TSL 4

Gene VAT1, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1-203ENST00000587062 NISCHQ9Y2I1 1504 aa49.34■■■■■ 5.49
VAT1-203ENST00000587062 CCDC180Q9P1Z9 1646 aa44.02■■■■■ 4.64
VAT1-203ENST00000587062 ABCC9O60706 1549 aa43.34■■■■■ 4.53
VAT1-203ENST00000587062 RB1CC1Q8TDY2 1594 aa41.64■■■■■ 4.26
VAT1-203ENST00000587062 DCAF8L2P0C7V8 631 aa41.54■■■■■ 4.24
VAT1-203ENST00000587062 NACADO15069 1562 aa41.51■■■■■ 4.24
VAT1-203ENST00000587062 MYO15BQ96JP2 1530 aa41.15■■■■■ 4.18
VAT1-203ENST00000587062 ZCCHC6Q5VYS8 1495 aaKnown RBP41■■■■■ 4.15
VAT1-203ENST00000587062 DCAF1Q9Y4B6 1507 aa40.84■■■■■ 4.13
VAT1-203ENST00000587062 UNC13AQ9UPW8 1703 aa40.53■■■■■ 4.08
VAT1-203ENST00000587062 PABPN1Q86U42 306 aaKnown RBP eCLIP40.47■■■■■ 4.07
VAT1-203ENST00000587062 BICRAQ9NZM4 1560 aa40.21■■■■■ 4.03
VAT1-203ENST00000587062 SCRIBQ14160 1630 aa40.09■■■■■ 4.01
VAT1-203ENST00000587062 SHROOM4Q9ULL8 1493 aa39.95■■■■□ 3.99
VAT1-203ENST00000587062 DNAJC5BQ9UF47 199 aa39.95■■■■□ 3.99
VAT1-203ENST00000587062 EIF4G1Q04637 1599 aaKnown RBP39.26■■■■□ 3.88
VAT1-203ENST00000587062 CC2D2AQ9P2K1 1620 aa39.18■■■■□ 3.86
VAT1-203ENST00000587062 CECR2Q9BXF3 1484 aa39.01■■■■□ 3.84
VAT1-203ENST00000587062 SMARCA4P51532 1647 aa38.33■■■■□ 3.73
VAT1-203ENST00000587062 BAZ1AQ9NRL2 1556 aaPredicted RBP38.32■■■■□ 3.73
VAT1-203ENST00000587062 NCAPD3P42695 1498 aa38.28■■■■□ 3.72
VAT1-203ENST00000587062 SMARCA2P51531 1590 aa38.23■■■■□ 3.71
VAT1-203ENST00000587062 ATAD2BQ9ULI0 1458 aa38.22■■■■□ 3.71
VAT1-203ENST00000587062 HMGXB3Q12766 1538 aa38.04■■■■□ 3.68
VAT1-203ENST00000587062 MROH2BQ7Z745 1585 aa37.97■■■■□ 3.67
VAT1-203ENST00000587062 PEG3Q9GZU2 1588 aa37.97■■■■□ 3.67
VAT1-203ENST00000587062 BAZ1BQ9UIG0 1483 aaKnown RBP37.95■■■■□ 3.67
VAT1-203ENST00000587062 WIZO95785 1651 aa37.55■■■■□ 3.6
VAT1-203ENST00000587062 ERCC6Q03468 1493 aa37.5■■■■□ 3.59
VAT1-203ENST00000587062 RSF1Q96T23 1441 aaPredicted RBP37.46■■■■□ 3.59
VAT1-203ENST00000587062 NESP48681 1621 aa37.35■■■■□ 3.57
VAT1-203ENST00000587062 LAMC3Q9Y6N6 1575 aa37.34■■■■□ 3.57
VAT1-203ENST00000587062 TOP2AP11388 1531 aaKnown RBP37.18■■■■□ 3.54
VAT1-203ENST00000587062 CADPSQ9ULU8 1353 aa37.17■■■■□ 3.54
VAT1-203ENST00000587062 CUX2O14529 1486 aa37.17■■■■□ 3.54
VAT1-203ENST00000587062 PDS5BQ9NTI5 1447 aa37.17■■■■□ 3.54
VAT1-203ENST00000587062 KIF21AQ7Z4S6 1674 aa36.92■■■■□ 3.5
VAT1-203ENST00000587062 THOC2Q8NI27 1593 aaKnown RBP36.84■■■■□ 3.49
VAT1-203ENST00000587062 CFTRP13569 1480 aa36.84■■■■□ 3.49
VAT1-203ENST00000587062 CCDC88BA6NC98 1476 aa36.75■■■■□ 3.47
VAT1-203ENST00000587062 CEP164Q9UPV0 1460 aa36.74■■■■□ 3.47
VAT1-203ENST00000587062 FANCD2Q9BXW9 1451 aa36.72■■■■□ 3.47
VAT1-203ENST00000587062 MRC2Q9UBG0 1479 aa36.72■■■■□ 3.47
VAT1-203ENST00000587062 WDR62O43379 1518 aa36.55■■■■□ 3.44
VAT1-203ENST00000587062 PRDM2Q13029 1718 aa36.54■■■■□ 3.44
VAT1-203ENST00000587062 SUPT5HO00267 1087 aaKnown RBP36.42■■■■□ 3.42
VAT1-203ENST00000587062 DNAJC5Q9H3Z4 198 aa36.38■■■■□ 3.41
VAT1-203ENST00000587062 URB2Q14146 1524 aaKnown RBP36.29■■■■□ 3.4
VAT1-203ENST00000587062 ABCC8Q09428 1581 aa36.21■■■■□ 3.39
VAT1-203ENST00000587062 TOPBP1Q92547 1522 aa36.08■■■■□ 3.37
VAT1-203ENST00000587062 DNMBPQ6XZF7 1577 aa36.02■■■■□ 3.36
VAT1-203ENST00000587062 IFT140Q96RY7 1462 aa35.99■■■■□ 3.35
VAT1-203ENST00000587062 POLA1P09884 1462 aaPredicted RBP35.73■■■■□ 3.31
VAT1-203ENST00000587062 ZNF608Q9ULD9 1512 aaPredicted RBP35.73■■■■□ 3.31
VAT1-203ENST00000587062 OSCARQ8IYS5 282 aa35.68■■■■□ 3.3
VAT1-203ENST00000587062 SOGA1O94964 1423 aa35.67■■■■□ 3.3
VAT1-203ENST00000587062 TARBP1Q13395 1621 aaKnown RBP35.65■■■■□ 3.3
VAT1-203ENST00000587062 CUX1P39880 1505 aa35.63■■■■□ 3.29
VAT1-203ENST00000587062 FGD5Q6ZNL6 1462 aa35.62■■■■□ 3.29
VAT1-203ENST00000587062 EIF4G3O43432 1585 aaKnown RBP35.6■■■■□ 3.29
VAT1-203ENST00000587062 RAD54L2Q9Y4B4 1467 aa35.56■■■■□ 3.28
VAT1-203ENST00000587062 AQRO60306 1485 aaKnown RBP eCLIP35.54■■■■□ 3.28
VAT1-203ENST00000587062 WDR97A6NE52 1622 aa35.49■■■■□ 3.27
VAT1-203ENST00000587062 TDRD9Q8NDG6 1382 aaKnown RBP35.47■■■■□ 3.27
VAT1-203ENST00000587062 WRNQ14191 1432 aaPredicted RBP eCLIP35.4■■■■□ 3.26
VAT1-203ENST00000587062 FBLN2P98095 1184 aa35.34■■■■□ 3.25
VAT1-203ENST00000587062 TOP2BQ02880 1626 aa35.31■■■■□ 3.24
VAT1-203ENST00000587062 BIVM-ERCC5R4GMW8 1640 aa35.29■■■■□ 3.24
VAT1-203ENST00000587062 GRIN2BQ13224 1484 aa35.29■■■■□ 3.24
VAT1-203ENST00000587062 ABCA10Q8WWZ4 1543 aa35.27■■■■□ 3.24
VAT1-203ENST00000587062 GAPVD1Q14C86 1478 aa35.23■■■■□ 3.23
VAT1-203ENST00000587062 MAGI1Q96QZ7 1491 aaPredicted RBP35.22■■■■□ 3.23
VAT1-203ENST00000587062 SNAPC4Q5SXM2 1469 aa35.22■■■■□ 3.23
VAT1-203ENST00000587062 CHMP7Q8WUX9 453 aaPredicted RBP35.21■■■■□ 3.23
VAT1-203ENST00000587062 SYNJ1O43426 1573 aa35.21■■■■□ 3.23
VAT1-203ENST00000587062 CHD1O14646 1710 aa35.2■■■■□ 3.23
VAT1-203ENST00000587062 PBRM1Q86U86 1689 aa35.11■■■■□ 3.21
VAT1-203ENST00000587062 ABCA5Q8WWZ7 1642 aa35.1■■■■□ 3.21
VAT1-203ENST00000587062 TRIM41Q8WV44 630 aa35.1■■■■□ 3.21
VAT1-203ENST00000587062 SYNJ2O15056 1496 aa35.08■■■■□ 3.21
VAT1-203ENST00000587062 RIMBP3CA6NJZ7 1639 aa34.95■■■■□ 3.19
VAT1-203ENST00000587062 RIMBP3BA6NNM3 1639 aa34.95■■■■□ 3.19
VAT1-203ENST00000587062 RIMBP3Q9UFD9 1639 aa34.95■■■■□ 3.19
VAT1-203ENST00000587062 ARHGEF11O15085 1522 aa34.93■■■■□ 3.18
VAT1-203ENST00000587062 ERICH3Q5RHP9 1530 aa34.88■■■■□ 3.17
VAT1-203ENST00000587062 FHAD1B1AJZ9 1412 aa34.83■■■■□ 3.17
VAT1-203ENST00000587062 CLASP1Q7Z460 1538 aa34.81■■■■□ 3.16
VAT1-203ENST00000587062 ADAMTS12P58397 1594 aa34.79■■■■□ 3.16
VAT1-203ENST00000587062 GRIN2AQ12879 1464 aa34.78■■■■□ 3.16
VAT1-203ENST00000587062 KIF27Q86VH2 1401 aa34.74■■■■□ 3.15
VAT1-203ENST00000587062 CYB5RLQ6IPT4 315 aa34.74■■■■□ 3.15
VAT1-203ENST00000587062 NUP160Q12769 1436 aa34.62■■■■□ 3.13
VAT1-203ENST00000587062 ARAP1Q96P48 1450 aa34.58■■■■□ 3.13
VAT1-203ENST00000587062 IGF1RP08069 1367 aa34.56■■■■□ 3.12
VAT1-203ENST00000587062 CEP170Q5SW79 1584 aa34.55■■■■□ 3.12
VAT1-203ENST00000587062 CUL7Q14999 1698 aa34.52■■■■□ 3.12
VAT1-203ENST00000587062 CARMIL1Q5VZK9 1371 aa34.41■■■■□ 3.1
VAT1-203ENST00000587062 JPH4Q96JJ6 628 aa34.38■■■■□ 3.09
VAT1-203ENST00000587062 SHROOM2Q13796 1616 aa34.36■■■■□ 3.09
VAT1-203ENST00000587062 PRG4Q92954 1404 aaPredicted RBP34.29■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms