RNA–Protein interactions for RNA: ENST00000586884.1

MBD1-215, Transcript of methyl-CpG binding domain protein 1, humanhuman

TSL 3

Gene MBD1, Length 514 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-215ENST00000586884 NISCHQ9Y2I1 1504 aa38.32■■■■□ 3.72
MBD1-215ENST00000586884 ABCC9O60706 1549 aa34.43■■■■□ 3.1
MBD1-215ENST00000586884 CCDC180Q9P1Z9 1646 aa34.42■■■■□ 3.1
MBD1-215ENST00000586884 RB1CC1Q8TDY2 1594 aa32.79■■■□□ 2.84
MBD1-215ENST00000586884 NACADO15069 1562 aa32.57■■■□□ 2.8
MBD1-215ENST00000586884 DNAJC5BQ9UF47 199 aa32.32■■■□□ 2.76
MBD1-215ENST00000586884 DCAF8L2P0C7V8 631 aa32.31■■■□□ 2.76
MBD1-215ENST00000586884 MYO15BQ96JP2 1530 aa32.15■■■□□ 2.74
MBD1-215ENST00000586884 PABPN1Q86U42 306 aaKnown RBP eCLIP32.04■■■□□ 2.72
MBD1-215ENST00000586884 UNC13AQ9UPW8 1703 aa31.95■■■□□ 2.71
MBD1-215ENST00000586884 BICRAQ9NZM4 1560 aa31.81■■■□□ 2.68
MBD1-215ENST00000586884 ZCCHC6Q5VYS8 1495 aaKnown RBP31.76■■■□□ 2.67
MBD1-215ENST00000586884 DCAF1Q9Y4B6 1507 aa31.7■■■□□ 2.66
MBD1-215ENST00000586884 SHROOM4Q9ULL8 1493 aa31.48■■■□□ 2.63
MBD1-215ENST00000586884 SCRIBQ14160 1630 aa31.31■■■□□ 2.6
MBD1-215ENST00000586884 CC2D2AQ9P2K1 1620 aa31.1■■■□□ 2.57
MBD1-215ENST00000586884 CECR2Q9BXF3 1484 aa31.06■■■□□ 2.56
MBD1-215ENST00000586884 EIF4G1Q04637 1599 aaKnown RBP31.05■■■□□ 2.56
MBD1-215ENST00000586884 NCAPD3P42695 1498 aa30.08■■■□□ 2.41
MBD1-215ENST00000586884 ATAD2BQ9ULI0 1458 aa29.95■■■□□ 2.39
MBD1-215ENST00000586884 SMARCA4P51532 1647 aa29.89■■■□□ 2.38
MBD1-215ENST00000586884 SMARCA2P51531 1590 aa29.88■■■□□ 2.37
MBD1-215ENST00000586884 HMGXB3Q12766 1538 aa29.85■■■□□ 2.37
MBD1-215ENST00000586884 DNAJC5Q9H3Z4 198 aa29.78■■■□□ 2.36
MBD1-215ENST00000586884 CUX2O14529 1486 aa29.77■■■□□ 2.36
MBD1-215ENST00000586884 BAZ1AQ9NRL2 1556 aaPredicted RBP29.77■■■□□ 2.36
MBD1-215ENST00000586884 ERCC6Q03468 1493 aa29.76■■■□□ 2.35
MBD1-215ENST00000586884 BAZ1BQ9UIG0 1483 aaKnown RBP29.67■■■□□ 2.34
MBD1-215ENST00000586884 PEG3Q9GZU2 1588 aa29.64■■■□□ 2.33
MBD1-215ENST00000586884 NESP48681 1621 aa29.55■■■□□ 2.32
MBD1-215ENST00000586884 MROH2BQ7Z745 1585 aa29.5■■■□□ 2.31
MBD1-215ENST00000586884 LAMC3Q9Y6N6 1575 aa29.39■■■□□ 2.3
MBD1-215ENST00000586884 THOC2Q8NI27 1593 aaKnown RBP29.29■■■□□ 2.28
MBD1-215ENST00000586884 PDS5BQ9NTI5 1447 aa29.24■■■□□ 2.27
MBD1-215ENST00000586884 KIF21AQ7Z4S6 1674 aa29.15■■■□□ 2.26
MBD1-215ENST00000586884 CADPSQ9ULU8 1353 aa29.14■■■□□ 2.26
MBD1-215ENST00000586884 WIZO95785 1651 aa29.12■■■□□ 2.25
MBD1-215ENST00000586884 MRC2Q9UBG0 1479 aa28.98■■■□□ 2.23
MBD1-215ENST00000586884 WDR62O43379 1518 aa28.91■■■□□ 2.22
MBD1-215ENST00000586884 RSF1Q96T23 1441 aaPredicted RBP28.89■■■□□ 2.22
MBD1-215ENST00000586884 CEP164Q9UPV0 1460 aa28.85■■■□□ 2.21
MBD1-215ENST00000586884 CFTRP13569 1480 aa28.81■■■□□ 2.2
MBD1-215ENST00000586884 TOP2AP11388 1531 aaKnown RBP28.8■■■□□ 2.2
MBD1-215ENST00000586884 FANCD2Q9BXW9 1451 aa28.8■■■□□ 2.2
MBD1-215ENST00000586884 URB2Q14146 1524 aaKnown RBP28.55■■■□□ 2.16
MBD1-215ENST00000586884 CCDC88BA6NC98 1476 aa28.46■■■□□ 2.15
MBD1-215ENST00000586884 PRDM2Q13029 1718 aa28.44■■■□□ 2.14
MBD1-215ENST00000586884 TRIM41Q8WV44 630 aa28.41■■■□□ 2.14
MBD1-215ENST00000586884 OSCARQ8IYS5 282 aa28.38■■■□□ 2.13
MBD1-215ENST00000586884 IFT140Q96RY7 1462 aa28.29■■■□□ 2.12
MBD1-215ENST00000586884 TOPBP1Q92547 1522 aa28.24■■■□□ 2.11
MBD1-215ENST00000586884 ABCC8Q09428 1581 aa28.23■■■□□ 2.11
MBD1-215ENST00000586884 ZNF608Q9ULD9 1512 aaPredicted RBP28.19■■■□□ 2.1
MBD1-215ENST00000586884 DNMBPQ6XZF7 1577 aa28.15■■■□□ 2.1
MBD1-215ENST00000586884 EIF4G3O43432 1585 aaKnown RBP28.05■■■□□ 2.08
MBD1-215ENST00000586884 TARBP1Q13395 1621 aaKnown RBP27.99■■■□□ 2.07
MBD1-215ENST00000586884 RIMBP3CA6NJZ7 1639 aa27.97■■■□□ 2.07
MBD1-215ENST00000586884 RIMBP3BA6NNM3 1639 aa27.97■■■□□ 2.07
MBD1-215ENST00000586884 RIMBP3Q9UFD9 1639 aa27.97■■■□□ 2.07
MBD1-215ENST00000586884 POLA1P09884 1462 aaPredicted RBP27.95■■■□□ 2.07
MBD1-215ENST00000586884 AQRO60306 1485 aaKnown RBP eCLIP27.94■■■□□ 2.061e-6■■□□□ 13.2
MBD1-215ENST00000586884 ARHGEF11O15085 1522 aa27.91■■■□□ 2.06
MBD1-215ENST00000586884 SOGA1O94964 1423 aa27.83■■■□□ 2.05
MBD1-215ENST00000586884 RAD54L2Q9Y4B4 1467 aa27.83■■■□□ 2.04
MBD1-215ENST00000586884 CHD1O14646 1710 aa27.81■■■□□ 2.04
MBD1-215ENST00000586884 FGD5Q6ZNL6 1462 aa27.77■■■□□ 2.04
MBD1-215ENST00000586884 TDRD9Q8NDG6 1382 aaKnown RBP27.76■■■□□ 2.03
MBD1-215ENST00000586884 FBLN2P98095 1184 aa27.76■■■□□ 2.03
MBD1-215ENST00000586884 WDR97A6NE52 1622 aa27.76■■■□□ 2.03
MBD1-215ENST00000586884 CUX1P39880 1505 aa27.72■■■□□ 2.03
MBD1-215ENST00000586884 CYB5RLQ6IPT4 315 aa27.68■■■□□ 2.02
MBD1-215ENST00000586884 SNAPC4Q5SXM2 1469 aa27.67■■■□□ 2.02
MBD1-215ENST00000586884 ARAP1Q96P48 1450 aa27.63■■■□□ 2.01
MBD1-215ENST00000586884 MAGI1Q96QZ7 1491 aaPredicted RBP27.63■■■□□ 2.01
MBD1-215ENST00000586884 GRIN2BQ13224 1484 aa27.61■■■□□ 2.01
MBD1-215ENST00000586884 CHMP7Q8WUX9 453 aaPredicted RBP27.58■■■□□ 2.01
MBD1-215ENST00000586884 CLASP1Q7Z460 1538 aa27.56■■■□□ 2
MBD1-215ENST00000586884 SYNJ1O43426 1573 aa27.54■■■□□ 2
MBD1-215ENST00000586884 SYNJ2O15056 1496 aa27.53■■■□□ 2
MBD1-215ENST00000586884 SUPT5HO00267 1087 aaKnown RBP27.51■■□□□ 1.99
MBD1-215ENST00000586884 GAPVD1Q14C86 1478 aa27.5■■□□□ 1.99
MBD1-215ENST00000586884 ABCA10Q8WWZ4 1543 aa27.47■■□□□ 1.99
MBD1-215ENST00000586884 PBRM1Q86U86 1689 aa27.44■■□□□ 1.98
MBD1-215ENST00000586884 ABCA5Q8WWZ7 1642 aa27.41■■□□□ 1.98
MBD1-215ENST00000586884 TRHP20396 242 aaPredicted RBP27.39■■□□□ 1.98
MBD1-215ENST00000586884 WRNQ14191 1432 aaPredicted RBP eCLIP27.36■■□□□ 1.97
MBD1-215ENST00000586884 TOP2BQ02880 1626 aa27.28■■□□□ 1.96
MBD1-215ENST00000586884 BIVM-ERCC5R4GMW8 1640 aa27.27■■□□□ 1.96
MBD1-215ENST00000586884 GRIN2AQ12879 1464 aa27.25■■□□□ 1.95
MBD1-215ENST00000586884 ADAMTS12P58397 1594 aa27.22■■□□□ 1.95
MBD1-215ENST00000586884 NUP160Q12769 1436 aa27.17■■□□□ 1.94
MBD1-215ENST00000586884 FHAD1B1AJZ9 1412 aa27.16■■□□□ 1.94
MBD1-215ENST00000586884 ERICH3Q5RHP9 1530 aa27.13■■□□□ 1.93
MBD1-215ENST00000586884 CEP170Q5SW79 1584 aa27.13■■□□□ 1.93
MBD1-215ENST00000586884 ERCC6L2Q5T890 1561 aa27.07■■□□□ 1.92
MBD1-215ENST00000586884 SHROOM2Q13796 1616 aa27.04■■□□□ 1.92
MBD1-215ENST00000586884 PRG4Q92954 1404 aaPredicted RBP26.9■■□□□ 1.9
MBD1-215ENST00000586884 JPH4Q96JJ6 628 aa26.87■■□□□ 1.89
MBD1-215ENST00000586884 RUSC2Q8N2Y8 1516 aa26.84■■□□□ 1.89
MBD1-215ENST00000586884 KIF27Q86VH2 1401 aa26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms