RNA–Protein interactions for RNA: ENST00000586863.5

ATG4D-206, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 4

Gene ATG4D, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-206ENST00000586863 NISCHQ9Y2I1 1504 aa35.19■■■■□ 3.22
ATG4D-206ENST00000586863 CCDC180Q9P1Z9 1646 aa31.58■■■□□ 2.65
ATG4D-206ENST00000586863 ABCC9O60706 1549 aa31.51■■■□□ 2.63
ATG4D-206ENST00000586863 RB1CC1Q8TDY2 1594 aa30■■■□□ 2.39
ATG4D-206ENST00000586863 NACADO15069 1562 aa29.81■■■□□ 2.36
ATG4D-206ENST00000586863 DCAF8L2P0C7V8 631 aa29.61■■■□□ 2.33
ATG4D-206ENST00000586863 DNAJC5BQ9UF47 199 aa29.5■■■□□ 2.31
ATG4D-206ENST00000586863 UNC13AQ9UPW8 1703 aa29.42■■■□□ 2.3
ATG4D-206ENST00000586863 MYO15BQ96JP2 1530 aa29.41■■■□□ 2.3
ATG4D-206ENST00000586863 PABPN1Q86U42 306 aaKnown RBP eCLIP29.32■■■□□ 2.28
ATG4D-206ENST00000586863 ZCCHC6Q5VYS8 1495 aaKnown RBP29.2■■■□□ 2.26
ATG4D-206ENST00000586863 BICRAQ9NZM4 1560 aa29.18■■■□□ 2.26
ATG4D-206ENST00000586863 DCAF1Q9Y4B6 1507 aa29.06■■■□□ 2.24
ATG4D-206ENST00000586863 SCRIBQ14160 1630 aa28.8■■■□□ 2.2
ATG4D-206ENST00000586863 SHROOM4Q9ULL8 1493 aa28.73■■■□□ 2.19
ATG4D-206ENST00000586863 CC2D2AQ9P2K1 1620 aa28.48■■■□□ 2.15
ATG4D-206ENST00000586863 EIF4G1Q04637 1599 aaKnown RBP28.44■■■□□ 2.14
ATG4D-206ENST00000586863 CECR2Q9BXF3 1484 aa28.37■■■□□ 2.13
ATG4D-206ENST00000586863 NCAPD3P42695 1498 aa27.51■■■□□ 2
ATG4D-206ENST00000586863 SMARCA4P51532 1647 aa27.47■■□□□ 1.99
ATG4D-206ENST00000586863 ATAD2BQ9ULI0 1458 aa27.45■■□□□ 1.99
ATG4D-206ENST00000586863 SMARCA2P51531 1590 aa27.37■■□□□ 1.97
ATG4D-206ENST00000586863 HMGXB3Q12766 1538 aa27.34■■□□□ 1.97
ATG4D-206ENST00000586863 BAZ1AQ9NRL2 1556 aaPredicted RBP27.31■■□□□ 1.96
ATG4D-206ENST00000586863 PEG3Q9GZU2 1588 aa27.19■■□□□ 1.94
ATG4D-206ENST00000586863 ERCC6Q03468 1493 aa27.19■■□□□ 1.94
ATG4D-206ENST00000586863 BAZ1BQ9UIG0 1483 aaKnown RBP27.19■■□□□ 1.94
ATG4D-206ENST00000586863 MROH2BQ7Z745 1585 aa27.14■■□□□ 1.93
ATG4D-206ENST00000586863 CUX2O14529 1486 aa27.12■■□□□ 1.93
ATG4D-206ENST00000586863 NESP48681 1621 aa27.1■■□□□ 1.93
ATG4D-206ENST00000586863 DNAJC5Q9H3Z4 198 aa27■■□□□ 1.91
ATG4D-206ENST00000586863 LAMC3Q9Y6N6 1575 aa26.89■■□□□ 1.9
ATG4D-206ENST00000586863 THOC2Q8NI27 1593 aaKnown RBP26.84■■□□□ 1.89
ATG4D-206ENST00000586863 WIZO95785 1651 aa26.82■■□□□ 1.88
ATG4D-206ENST00000586863 KIF21AQ7Z4S6 1674 aa26.79■■□□□ 1.88
ATG4D-206ENST00000586863 PDS5BQ9NTI5 1447 aa26.71■■□□□ 1.87
ATG4D-206ENST00000586863 CADPSQ9ULU8 1353 aa26.67■■□□□ 1.86
ATG4D-206ENST00000586863 RSF1Q96T23 1441 aaPredicted RBP26.56■■□□□ 1.84
ATG4D-206ENST00000586863 MRC2Q9UBG0 1479 aa26.51■■□□□ 1.83
ATG4D-206ENST00000586863 TOP2AP11388 1531 aaKnown RBP26.48■■□□□ 1.83
ATG4D-206ENST00000586863 WDR62O43379 1518 aa26.47■■□□□ 1.83
ATG4D-206ENST00000586863 CEP164Q9UPV0 1460 aa26.41■■□□□ 1.82
ATG4D-206ENST00000586863 CFTRP13569 1480 aa26.4■■□□□ 1.82
ATG4D-206ENST00000586863 FANCD2Q9BXW9 1451 aa26.39■■□□□ 1.82
ATG4D-206ENST00000586863 PRDM2Q13029 1718 aa26.2■■□□□ 1.79
ATG4D-206ENST00000586863 URB2Q14146 1524 aaKnown RBP26.19■■□□□ 1.78
ATG4D-206ENST00000586863 CCDC88BA6NC98 1476 aa26.16■■□□□ 1.78
ATG4D-206ENST00000586863 TOPBP1Q92547 1522 aa25.91■■□□□ 1.74
ATG4D-206ENST00000586863 IFT140Q96RY7 1462 aa25.87■■□□□ 1.73
ATG4D-206ENST00000586863 TRIM41Q8WV44 630 aa25.86■■□□□ 1.73
ATG4D-206ENST00000586863 ZNF608Q9ULD9 1512 aaPredicted RBP25.86■■□□□ 1.73
ATG4D-206ENST00000586863 OSCARQ8IYS5 282 aa25.83■■□□□ 1.73
ATG4D-206ENST00000586863 DNMBPQ6XZF7 1577 aa25.82■■□□□ 1.72
ATG4D-206ENST00000586863 ABCC8Q09428 1581 aa25.8■■□□□ 1.72
ATG4D-206ENST00000586863 EIF4G3O43432 1585 aaKnown RBP25.73■■□□□ 1.71
ATG4D-206ENST00000586863 TARBP1Q13395 1621 aaKnown RBP25.7■■□□□ 1.7
ATG4D-206ENST00000586863 POLA1P09884 1462 aaPredicted RBP25.66■■□□□ 1.7
ATG4D-206ENST00000586863 AQRO60306 1485 aaKnown RBP eCLIP25.61■■□□□ 1.693e-6■■■■□ 19.5
ATG4D-206ENST00000586863 RIMBP3CA6NJZ7 1639 aa25.59■■□□□ 1.69
ATG4D-206ENST00000586863 RIMBP3BA6NNM3 1639 aa25.59■■□□□ 1.69
ATG4D-206ENST00000586863 RIMBP3Q9UFD9 1639 aa25.59■■□□□ 1.69
ATG4D-206ENST00000586863 RAD54L2Q9Y4B4 1467 aa25.55■■□□□ 1.68
ATG4D-206ENST00000586863 CHD1O14646 1710 aa25.55■■□□□ 1.68
ATG4D-206ENST00000586863 ARHGEF11O15085 1522 aa25.5■■□□□ 1.67
ATG4D-206ENST00000586863 FGD5Q6ZNL6 1462 aa25.5■■□□□ 1.67
ATG4D-206ENST00000586863 CUX1P39880 1505 aa25.49■■□□□ 1.67
ATG4D-206ENST00000586863 SOGA1O94964 1423 aa25.49■■□□□ 1.67
ATG4D-206ENST00000586863 TDRD9Q8NDG6 1382 aaKnown RBP25.44■■□□□ 1.66
ATG4D-206ENST00000586863 WDR97A6NE52 1622 aa25.41■■□□□ 1.66
ATG4D-206ENST00000586863 SUPT5HO00267 1087 aaKnown RBP25.39■■□□□ 1.66
ATG4D-206ENST00000586863 FBLN2P98095 1184 aa25.38■■□□□ 1.65
ATG4D-206ENST00000586863 SNAPC4Q5SXM2 1469 aa25.37■■□□□ 1.65
ATG4D-206ENST00000586863 MAGI1Q96QZ7 1491 aaPredicted RBP25.28■■□□□ 1.64
ATG4D-206ENST00000586863 GRIN2BQ13224 1484 aa25.28■■□□□ 1.64
ATG4D-206ENST00000586863 ARAP1Q96P48 1450 aa25.27■■□□□ 1.64
ATG4D-206ENST00000586863 CYB5RLQ6IPT4 315 aa25.25■■□□□ 1.63
ATG4D-206ENST00000586863 PBRM1Q86U86 1689 aa25.25■■□□□ 1.63
ATG4D-206ENST00000586863 CLASP1Q7Z460 1538 aa25.24■■□□□ 1.63
ATG4D-206ENST00000586863 GAPVD1Q14C86 1478 aa25.21■■□□□ 1.63
ATG4D-206ENST00000586863 SYNJ1O43426 1573 aa25.2■■□□□ 1.62
ATG4D-206ENST00000586863 CHMP7Q8WUX9 453 aaPredicted RBP25.2■■□□□ 1.62
ATG4D-206ENST00000586863 ABCA10Q8WWZ4 1543 aa25.2■■□□□ 1.62
ATG4D-206ENST00000586863 SYNJ2O15056 1496 aa25.2■■□□□ 1.62
ATG4D-206ENST00000586863 ABCA5Q8WWZ7 1642 aa25.19■■□□□ 1.62
ATG4D-206ENST00000586863 BIVM-ERCC5R4GMW8 1640 aa25.11■■□□□ 1.61
ATG4D-206ENST00000586863 TOP2BQ02880 1626 aa25.09■■□□□ 1.61
ATG4D-206ENST00000586863 WRNQ14191 1432 aaPredicted RBP eCLIP25.08■■□□□ 1.61
ATG4D-206ENST00000586863 ADAMTS12P58397 1594 aa25.01■■□□□ 1.59
ATG4D-206ENST00000586863 GRIN2AQ12879 1464 aa24.97■■□□□ 1.59
ATG4D-206ENST00000586863 TRHP20396 242 aaPredicted RBP24.93■■□□□ 1.58
ATG4D-206ENST00000586863 CEP170Q5SW79 1584 aa24.91■■□□□ 1.58
ATG4D-206ENST00000586863 NUP160Q12769 1436 aa24.89■■□□□ 1.58
ATG4D-206ENST00000586863 ERICH3Q5RHP9 1530 aa24.88■■□□□ 1.57
ATG4D-206ENST00000586863 FHAD1B1AJZ9 1412 aa24.87■■□□□ 1.57
ATG4D-206ENST00000586863 ERCC6L2Q5T890 1561 aa24.87■■□□□ 1.57
ATG4D-206ENST00000586863 SHROOM2Q13796 1616 aa24.79■■□□□ 1.56
ATG4D-206ENST00000586863 RUSC2Q8N2Y8 1516 aa24.66■■□□□ 1.54
ATG4D-206ENST00000586863 PRG4Q92954 1404 aaPredicted RBP24.62■■□□□ 1.53
ATG4D-206ENST00000586863 JPH4Q96JJ6 628 aa24.58■■□□□ 1.53
ATG4D-206ENST00000586863 KIF27Q86VH2 1401 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms