RNA–Protein interactions for RNA: ENST00000586718.1

NPC1-204, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 3

Gene NPC1, Length 574 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-204ENST00000586718 NISCHQ9Y2I1 1504 aa19.71■□□□□ 0.75
NPC1-204ENST00000586718 CCDC180Q9P1Z9 1646 aa17.43■□□□□ 0.38
NPC1-204ENST00000586718 ZCCHC6Q5VYS8 1495 aaKnown RBP16.57■□□□□ 0.24
NPC1-204ENST00000586718 ABCC9O60706 1549 aa16.45■□□□□ 0.22
NPC1-204ENST00000586718 DCAF1Q9Y4B6 1507 aa16.37■□□□□ 0.21
NPC1-204ENST00000586718 MYO15BQ96JP2 1530 aa16.24■□□□□ 0.19
NPC1-204ENST00000586718 NACADO15069 1562 aa16.19■□□□□ 0.18
NPC1-204ENST00000586718 DCAF8L2P0C7V8 631 aa16.19■□□□□ 0.18
NPC1-204ENST00000586718 RB1CC1Q8TDY2 1594 aa16.12■□□□□ 0.17
NPC1-204ENST00000586718 SCRIBQ14160 1630 aa15.9■□□□□ 0.14
NPC1-204ENST00000586718 SHROOM4Q9ULL8 1493 aa15.85■□□□□ 0.13
NPC1-204ENST00000586718 UNC13AQ9UPW8 1703 aa15.76■□□□□ 0.11
NPC1-204ENST00000586718 BICRAQ9NZM4 1560 aa15.53■□□□□ 0.08
NPC1-204ENST00000586718 PABPN1Q86U42 306 aaKnown RBP eCLIP15.36■□□□□ 0.05
NPC1-204ENST00000586718 BAZ1AQ9NRL2 1556 aaPredicted RBP15.3■□□□□ 0.04
NPC1-204ENST00000586718 SMARCA4P51532 1647 aa15.25■□□□□ 0.03
NPC1-204ENST00000586718 CECR2Q9BXF3 1484 aa15.24■□□□□ 0.03
NPC1-204ENST00000586718 MROH2BQ7Z745 1585 aa15.18■□□□□ 0.02
NPC1-204ENST00000586718 RSF1Q96T23 1441 aaPredicted RBP15.17■□□□□ 0.02
NPC1-204ENST00000586718 SUPT5HO00267 1087 aaKnown RBP15.15■□□□□ 0.02
NPC1-204ENST00000586718 EIF4G1Q04637 1599 aaKnown RBP15.12■□□□□ 0.01
NPC1-204ENST00000586718 WIZO95785 1651 aa15.08■□□□□ 0
NPC1-204ENST00000586718 PEG3Q9GZU2 1588 aa15.07■□□□□ 0
NPC1-204ENST00000586718 SMARCA2P51531 1590 aa15.05■□□□□ -0
NPC1-204ENST00000586718 TOP2AP11388 1531 aaKnown RBP14.99□□□□□ -0.01
NPC1-204ENST00000586718 ATAD2BQ9ULI0 1458 aa14.96□□□□□ -0.01
NPC1-204ENST00000586718 HMGXB3Q12766 1538 aa14.93□□□□□ -0.02
NPC1-204ENST00000586718 BAZ1BQ9UIG0 1483 aaKnown RBP14.93□□□□□ -0.02
NPC1-204ENST00000586718 CC2D2AQ9P2K1 1620 aa14.92□□□□□ -0.02
NPC1-204ENST00000586718 NCAPD3P42695 1498 aa14.86□□□□□ -0.03
NPC1-204ENST00000586718 CCDC88BA6NC98 1476 aa14.72□□□□□ -0.05
NPC1-204ENST00000586718 PRDM2Q13029 1718 aa14.6□□□□□ -0.07
NPC1-204ENST00000586718 CFTRP13569 1480 aa14.5□□□□□ -0.09
NPC1-204ENST00000586718 LAMC3Q9Y6N6 1575 aa14.48□□□□□ -0.09
NPC1-204ENST00000586718 CADPSQ9ULU8 1353 aa14.45□□□□□ -0.1
NPC1-204ENST00000586718 DNAJC5BQ9UF47 199 aa14.44□□□□□ -0.1
NPC1-204ENST00000586718 CHIC1Q5VXU3 224 aa14.4□□□□□ -0.1
NPC1-204ENST00000586718 ABCC8Q09428 1581 aa14.39□□□□□ -0.11
NPC1-204ENST00000586718 NESP48681 1621 aa14.35□□□□□ -0.11
NPC1-204ENST00000586718 WRNQ14191 1432 aaPredicted RBP eCLIP14.34□□□□□ -0.11
NPC1-204ENST00000586718 FANCD2Q9BXW9 1451 aa14.33□□□□□ -0.12
NPC1-204ENST00000586718 PDS5BQ9NTI5 1447 aa14.32□□□□□ -0.12
NPC1-204ENST00000586718 CEP164Q9UPV0 1460 aa14.31□□□□□ -0.12
NPC1-204ENST00000586718 BIVM-ERCC5R4GMW8 1640 aa14.31□□□□□ -0.12
NPC1-204ENST00000586718 KIF21AQ7Z4S6 1674 aa14.31□□□□□ -0.12
NPC1-204ENST00000586718 TRIM41Q8WV44 630 aa14.31□□□□□ -0.12
NPC1-204ENST00000586718 SYNJ1O43426 1573 aa14.3□□□□□ -0.12
NPC1-204ENST00000586718 TOP2BQ02880 1626 aa14.29□□□□□ -0.12
NPC1-204ENST00000586718 DNMBPQ6XZF7 1577 aa14.24□□□□□ -0.13
NPC1-204ENST00000586718 CUX1P39880 1505 aa14.24□□□□□ -0.13
NPC1-204ENST00000586718 ERCC6Q03468 1493 aa14.2□□□□□ -0.14
NPC1-204ENST00000586718 MRC2Q9UBG0 1479 aa14.17□□□□□ -0.14
NPC1-204ENST00000586718 TOPBP1Q92547 1522 aa14.16□□□□□ -0.14
NPC1-204ENST00000586718 URB2Q14146 1524 aaKnown RBP14.14□□□□□ -0.15
NPC1-204ENST00000586718 FGD5Q6ZNL6 1462 aa14.12□□□□□ -0.15
NPC1-204ENST00000586718 EEA1Q15075 1411 aa14.12□□□□□ -0.15
NPC1-204ENST00000586718 THOC2Q8NI27 1593 aaKnown RBP14.12□□□□□ -0.15
NPC1-204ENST00000586718 WDR62O43379 1518 aa14.1□□□□□ -0.15
NPC1-204ENST00000586718 POLA1P09884 1462 aaPredicted RBP14.07□□□□□ -0.16
NPC1-204ENST00000586718 WDR97A6NE52 1622 aa14.05□□□□□ -0.16
NPC1-204ENST00000586718 SOGA1O94964 1423 aa14.02□□□□□ -0.16
NPC1-204ENST00000586718 KIF27Q86VH2 1401 aa14.01□□□□□ -0.17
NPC1-204ENST00000586718 ABCA10Q8WWZ4 1543 aa14□□□□□ -0.17
NPC1-204ENST00000586718 CUX2O14529 1486 aa13.99□□□□□ -0.17
NPC1-204ENST00000586718 TARBP1Q13395 1621 aaKnown RBP13.98□□□□□ -0.17
NPC1-204ENST00000586718 FAM9AQ8IZU1 332 aaPredicted RBP13.98□□□□□ -0.17
NPC1-204ENST00000586718 IFT140Q96RY7 1462 aa13.97□□□□□ -0.17
NPC1-204ENST00000586718 RAD54L2Q9Y4B4 1467 aa13.97□□□□□ -0.17
NPC1-204ENST00000586718 KIF21BO75037 1637 aa13.95□□□□□ -0.18
NPC1-204ENST00000586718 ABCA5Q8WWZ7 1642 aa13.95□□□□□ -0.18
NPC1-204ENST00000586718 RUSC2Q8N2Y8 1516 aa13.95□□□□□ -0.18
NPC1-204ENST00000586718 CUL7Q14999 1698 aa13.91□□□□□ -0.18
NPC1-204ENST00000586718 PBRM1Q86U86 1689 aa13.91□□□□□ -0.18
NPC1-204ENST00000586718 CSRNP3Q8WYN3 585 aa13.9□□□□□ -0.18
NPC1-204ENST00000586718 GOLGA3Q08378 1498 aa13.9□□□□□ -0.18
NPC1-204ENST00000586718 ERICH3Q5RHP9 1530 aa13.89□□□□□ -0.19
NPC1-204ENST00000586718 EIF4G3O43432 1585 aaKnown RBP13.88□□□□□ -0.19
NPC1-204ENST00000586718 GAPVD1Q14C86 1478 aa13.87□□□□□ -0.19
NPC1-204ENST00000586718 PRXQ9BXM0 1461 aa13.83□□□□□ -0.2
NPC1-204ENST00000586718 TDRD9Q8NDG6 1382 aaKnown RBP13.82□□□□□ -0.2
NPC1-204ENST00000586718 GRIN2BQ13224 1484 aa13.81□□□□□ -0.2
NPC1-204ENST00000586718 ZNF608Q9ULD9 1512 aaPredicted RBP13.8□□□□□ -0.2
NPC1-204ENST00000586718 ADAMTS12P58397 1594 aa13.8□□□□□ -0.2
NPC1-204ENST00000586718 RAPGEF2Q9Y4G8 1499 aa13.8□□□□□ -0.2
NPC1-204ENST00000586718 IGF1RP08069 1367 aa13.79□□□□□ -0.2
NPC1-204ENST00000586718 LOC105371045A0A1W2PR82 267 aa13.77□□□□□ -0.21
NPC1-204ENST00000586718 AQRO60306 1485 aaKnown RBP eCLIP13.77□□□□□ -0.21
NPC1-204ENST00000586718 CARMIL1Q5VZK9 1371 aa13.77□□□□□ -0.21
NPC1-204ENST00000586718 EHMT2Q96KQ7 1210 aa13.76□□□□□ -0.21
NPC1-204ENST00000586718 CTTNBP2Q8WZ74 1663 aa13.75□□□□□ -0.21
NPC1-204ENST00000586718 MAGI1Q96QZ7 1491 aaPredicted RBP13.74□□□□□ -0.21
NPC1-204ENST00000586718 TNIKQ9UKE5 1360 aa13.74□□□□□ -0.21
NPC1-204ENST00000586718 SNAPC4Q5SXM2 1469 aa13.74□□□□□ -0.21
NPC1-204ENST00000586718 FHAD1B1AJZ9 1412 aa13.73□□□□□ -0.21
NPC1-204ENST00000586718 UBTFP17480 764 aaKnown RBP13.73□□□□□ -0.21
NPC1-204ENST00000586718 CEP162Q5TB80 1403 aa13.69□□□□□ -0.22
NPC1-204ENST00000586718 SYNJ2O15056 1496 aa13.67□□□□□ -0.22
NPC1-204ENST00000586718 GRIN2AQ12879 1464 aa13.64□□□□□ -0.23
NPC1-204ENST00000586718 CLIP1P30622 1438 aa13.63□□□□□ -0.23
NPC1-204ENST00000586718 CHD1O14646 1710 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms