RNA–Protein interactions for RNA: ENST00000586477.1

ATG4D-205, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 628 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-205ENST00000586477 NISCHQ9Y2I1 1504 aa39.28■■■■□ 3.88
ATG4D-205ENST00000586477 CCDC180Q9P1Z9 1646 aa35.05■■■■□ 3.2
ATG4D-205ENST00000586477 ABCC9O60706 1549 aa34.59■■■■□ 3.13
ATG4D-205ENST00000586477 RB1CC1Q8TDY2 1594 aa33.09■■■□□ 2.89
ATG4D-205ENST00000586477 NACADO15069 1562 aa32.99■■■□□ 2.87
ATG4D-205ENST00000586477 DCAF8L2P0C7V8 631 aa32.8■■■□□ 2.84
ATG4D-205ENST00000586477 MYO15BQ96JP2 1530 aa32.71■■■□□ 2.83
ATG4D-205ENST00000586477 ZCCHC6Q5VYS8 1495 aaKnown RBP32.67■■■□□ 2.82
ATG4D-205ENST00000586477 UNC13AQ9UPW8 1703 aa32.5■■■□□ 2.79
ATG4D-205ENST00000586477 DCAF1Q9Y4B6 1507 aa32.46■■■□□ 2.79
ATG4D-205ENST00000586477 PABPN1Q86U42 306 aaKnown RBP eCLIP32.26■■■□□ 2.75
ATG4D-205ENST00000586477 BICRAQ9NZM4 1560 aa32.24■■■□□ 2.75
ATG4D-205ENST00000586477 DNAJC5BQ9UF47 199 aa32.13■■■□□ 2.73
ATG4D-205ENST00000586477 SCRIBQ14160 1630 aa31.97■■■□□ 2.71
ATG4D-205ENST00000586477 SHROOM4Q9ULL8 1493 aa31.72■■■□□ 2.67
ATG4D-205ENST00000586477 EIF4G1Q04637 1599 aaKnown RBP31.34■■■□□ 2.61
ATG4D-205ENST00000586477 CC2D2AQ9P2K1 1620 aa31.3■■■□□ 2.6
ATG4D-205ENST00000586477 CECR2Q9BXF3 1484 aa31.09■■■□□ 2.57
ATG4D-205ENST00000586477 SMARCA4P51532 1647 aa30.55■■■□□ 2.48
ATG4D-205ENST00000586477 NCAPD3P42695 1498 aa30.46■■■□□ 2.47
ATG4D-205ENST00000586477 ATAD2BQ9ULI0 1458 aa30.45■■■□□ 2.47
ATG4D-205ENST00000586477 BAZ1AQ9NRL2 1556 aaPredicted RBP30.41■■■□□ 2.46
ATG4D-205ENST00000586477 SMARCA2P51531 1590 aa30.35■■■□□ 2.45
ATG4D-205ENST00000586477 MROH2BQ7Z745 1585 aa30.3■■■□□ 2.44
ATG4D-205ENST00000586477 HMGXB3Q12766 1538 aa30.29■■■□□ 2.44
ATG4D-205ENST00000586477 PEG3Q9GZU2 1588 aa30.27■■■□□ 2.44
ATG4D-205ENST00000586477 BAZ1BQ9UIG0 1483 aaKnown RBP30.13■■■□□ 2.41
ATG4D-205ENST00000586477 WIZO95785 1651 aa29.96■■■□□ 2.39
ATG4D-205ENST00000586477 NESP48681 1621 aa29.89■■■□□ 2.38
ATG4D-205ENST00000586477 RSF1Q96T23 1441 aaPredicted RBP29.81■■■□□ 2.36
ATG4D-205ENST00000586477 ERCC6Q03468 1493 aa29.74■■■□□ 2.35
ATG4D-205ENST00000586477 LAMC3Q9Y6N6 1575 aa29.69■■■□□ 2.34
ATG4D-205ENST00000586477 CUX2O14529 1486 aa29.59■■■□□ 2.33
ATG4D-205ENST00000586477 TOP2AP11388 1531 aaKnown RBP29.57■■■□□ 2.32
ATG4D-205ENST00000586477 KIF21AQ7Z4S6 1674 aa29.54■■■□□ 2.32
ATG4D-205ENST00000586477 CADPSQ9ULU8 1353 aa29.53■■■□□ 2.32
ATG4D-205ENST00000586477 THOC2Q8NI27 1593 aaKnown RBP29.52■■■□□ 2.32
ATG4D-205ENST00000586477 PDS5BQ9NTI5 1447 aa29.45■■■□□ 2.3
ATG4D-205ENST00000586477 DNAJC5Q9H3Z4 198 aa29.4■■■□□ 2.3
ATG4D-205ENST00000586477 CFTRP13569 1480 aa29.33■■■□□ 2.29
ATG4D-205ENST00000586477 CCDC88BA6NC98 1476 aa29.25■■■□□ 2.27
ATG4D-205ENST00000586477 MRC2Q9UBG0 1479 aa29.23■■■□□ 2.27
ATG4D-205ENST00000586477 FANCD2Q9BXW9 1451 aa29.21■■■□□ 2.27
ATG4D-205ENST00000586477 CEP164Q9UPV0 1460 aa29.17■■■□□ 2.26
ATG4D-205ENST00000586477 WDR62O43379 1518 aa29.17■■■□□ 2.26
ATG4D-205ENST00000586477 PRDM2Q13029 1718 aa29.11■■■□□ 2.25
ATG4D-205ENST00000586477 URB2Q14146 1524 aaKnown RBP29■■■□□ 2.23
ATG4D-205ENST00000586477 TOPBP1Q92547 1522 aa28.74■■■□□ 2.19
ATG4D-205ENST00000586477 SUPT5HO00267 1087 aaKnown RBP28.73■■■□□ 2.19
ATG4D-205ENST00000586477 DNMBPQ6XZF7 1577 aa28.67■■■□□ 2.18
ATG4D-205ENST00000586477 ABCC8Q09428 1581 aa28.62■■■□□ 2.17
ATG4D-205ENST00000586477 IFT140Q96RY7 1462 aa28.58■■■□□ 2.17
ATG4D-205ENST00000586477 ZNF608Q9ULD9 1512 aaPredicted RBP28.57■■■□□ 2.16
ATG4D-205ENST00000586477 TARBP1Q13395 1621 aaKnown RBP28.49■■■□□ 2.15
ATG4D-205ENST00000586477 POLA1P09884 1462 aaPredicted RBP28.47■■■□□ 2.15
ATG4D-205ENST00000586477 CUX1P39880 1505 aa28.44■■■□□ 2.14
ATG4D-205ENST00000586477 EIF4G3O43432 1585 aaKnown RBP28.42■■■□□ 2.14
ATG4D-205ENST00000586477 RAD54L2Q9Y4B4 1467 aa28.37■■■□□ 2.13
ATG4D-205ENST00000586477 FGD5Q6ZNL6 1462 aa28.35■■■□□ 2.13
ATG4D-205ENST00000586477 AQRO60306 1485 aaKnown RBP eCLIP28.34■■■□□ 2.133e-6■■■■□ 21
ATG4D-205ENST00000586477 SOGA1O94964 1423 aa28.3■■■□□ 2.12
ATG4D-205ENST00000586477 OSCARQ8IYS5 282 aa28.28■■■□□ 2.12
ATG4D-205ENST00000586477 TRIM41Q8WV44 630 aa28.22■■■□□ 2.11
ATG4D-205ENST00000586477 TDRD9Q8NDG6 1382 aaKnown RBP28.21■■■□□ 2.11
ATG4D-205ENST00000586477 WDR97A6NE52 1622 aa28.2■■■□□ 2.1
ATG4D-205ENST00000586477 CHD1O14646 1710 aa28.15■■■□□ 2.1
ATG4D-205ENST00000586477 SYNJ1O43426 1573 aa28.1■■■□□ 2.09
ATG4D-205ENST00000586477 BIVM-ERCC5R4GMW8 1640 aa28.1■■■□□ 2.09
ATG4D-205ENST00000586477 TOP2BQ02880 1626 aa28.08■■■□□ 2.09
ATG4D-205ENST00000586477 WRNQ14191 1432 aaPredicted RBP eCLIP28.06■■■□□ 2.08
ATG4D-205ENST00000586477 SNAPC4Q5SXM2 1469 aa28.05■■■□□ 2.08
ATG4D-205ENST00000586477 ABCA10Q8WWZ4 1543 aa28.05■■■□□ 2.08
ATG4D-205ENST00000586477 ABCA5Q8WWZ7 1642 aa28.01■■■□□ 2.07
ATG4D-205ENST00000586477 GRIN2BQ13224 1484 aa28.01■■■□□ 2.07
ATG4D-205ENST00000586477 PBRM1Q86U86 1689 aa28■■■□□ 2.07
ATG4D-205ENST00000586477 GAPVD1Q14C86 1478 aa27.97■■■□□ 2.07
ATG4D-205ENST00000586477 RIMBP3CA6NJZ7 1639 aa27.96■■■□□ 2.07
ATG4D-205ENST00000586477 RIMBP3BA6NNM3 1639 aa27.96■■■□□ 2.07
ATG4D-205ENST00000586477 RIMBP3Q9UFD9 1639 aa27.96■■■□□ 2.07
ATG4D-205ENST00000586477 MAGI1Q96QZ7 1491 aaPredicted RBP27.96■■■□□ 2.07
ATG4D-205ENST00000586477 FBLN2P98095 1184 aa27.94■■■□□ 2.06
ATG4D-205ENST00000586477 ARHGEF11O15085 1522 aa27.89■■■□□ 2.06
ATG4D-205ENST00000586477 SYNJ2O15056 1496 aa27.87■■■□□ 2.05
ATG4D-205ENST00000586477 CLASP1Q7Z460 1538 aa27.83■■■□□ 2.05
ATG4D-205ENST00000586477 CHMP7Q8WUX9 453 aaPredicted RBP27.82■■■□□ 2.04
ATG4D-205ENST00000586477 ADAMTS12P58397 1594 aa27.75■■■□□ 2.03
ATG4D-205ENST00000586477 ERICH3Q5RHP9 1530 aa27.69■■■□□ 2.02
ATG4D-205ENST00000586477 ARAP1Q96P48 1450 aa27.69■■■□□ 2.02
ATG4D-205ENST00000586477 GRIN2AQ12879 1464 aa27.67■■■□□ 2.02
ATG4D-205ENST00000586477 FHAD1B1AJZ9 1412 aa27.63■■■□□ 2.01
ATG4D-205ENST00000586477 CYB5RLQ6IPT4 315 aa27.61■■■□□ 2.01
ATG4D-205ENST00000586477 CEP170Q5SW79 1584 aa27.6■■■□□ 2.01
ATG4D-205ENST00000586477 NUP160Q12769 1436 aa27.58■■■□□ 2.01
ATG4D-205ENST00000586477 ERCC6L2Q5T890 1561 aa27.48■■□□□ 1.99
ATG4D-205ENST00000586477 IGF1RP08069 1367 aa27.47■■□□□ 1.99
ATG4D-205ENST00000586477 KIF27Q86VH2 1401 aa27.46■■□□□ 1.99
ATG4D-205ENST00000586477 SHROOM2Q13796 1616 aa27.45■■□□□ 1.99
ATG4D-205ENST00000586477 CUL7Q14999 1698 aa27.38■■□□□ 1.97
ATG4D-205ENST00000586477 RUSC2Q8N2Y8 1516 aa27.36■■□□□ 1.97
ATG4D-205ENST00000586477 TRHP20396 242 aaPredicted RBP27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms