RNA–Protein interactions for RNA: ENST00000586122.5

SMARCA4-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 5

Gene SMARCA4, Length 512 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-209ENST00000586122 NISCHQ9Y2I1 1504 aa25.46■■□□□ 1.67
SMARCA4-209ENST00000586122 CCDC180Q9P1Z9 1646 aa22.76■■□□□ 1.23
SMARCA4-209ENST00000586122 ABCC9O60706 1549 aa22.21■■□□□ 1.15
SMARCA4-209ENST00000586122 RB1CC1Q8TDY2 1594 aa21.44■■□□□ 1.02
SMARCA4-209ENST00000586122 NACADO15069 1562 aa21.4■■□□□ 1.02
SMARCA4-209ENST00000586122 MYO15BQ96JP2 1530 aa21.29■■□□□ 1
SMARCA4-209ENST00000586122 ZCCHC6Q5VYS8 1495 aaKnown RBP21.2■□□□□ 0.98
SMARCA4-209ENST00000586122 DCAF8L2P0C7V8 631 aa21.19■□□□□ 0.98
SMARCA4-209ENST00000586122 DCAF1Q9Y4B6 1507 aa21.14■□□□□ 0.97
SMARCA4-209ENST00000586122 UNC13AQ9UPW8 1703 aa20.92■□□□□ 0.94
SMARCA4-209ENST00000586122 BICRAQ9NZM4 1560 aa20.72■□□□□ 0.91
SMARCA4-209ENST00000586122 PABPN1Q86U42 306 aaKnown RBP eCLIP20.69■□□□□ 0.9
SMARCA4-209ENST00000586122 SHROOM4Q9ULL8 1493 aa20.65■□□□□ 0.9
SMARCA4-209ENST00000586122 SCRIBQ14160 1630 aa20.64■□□□□ 0.89
SMARCA4-209ENST00000586122 DNAJC5BQ9UF47 199 aa20.41■□□□□ 0.86
SMARCA4-209ENST00000586122 EIF4G1Q04637 1599 aaKnown RBP20.21■□□□□ 0.83
SMARCA4-209ENST00000586122 CC2D2AQ9P2K1 1620 aa20.14■□□□□ 0.81
SMARCA4-209ENST00000586122 CECR2Q9BXF3 1484 aa20.02■□□□□ 0.8
SMARCA4-209ENST00000586122 SMARCA4P51532 1647 aa19.78■□□□□ 0.76
SMARCA4-209ENST00000586122 BAZ1AQ9NRL2 1556 aaPredicted RBP19.78■□□□□ 0.76
SMARCA4-209ENST00000586122 NCAPD3P42695 1498 aa19.72■□□□□ 0.75
SMARCA4-209ENST00000586122 SMARCA2P51531 1590 aa19.71■□□□□ 0.75
SMARCA4-209ENST00000586122 ATAD2BQ9ULI0 1458 aa19.68■□□□□ 0.74
SMARCA4-209ENST00000586122 HMGXB3Q12766 1538 aa19.64■□□□□ 0.73
SMARCA4-209ENST00000586122 PEG3Q9GZU2 1588 aa19.63■□□□□ 0.73
SMARCA4-209ENST00000586122 MROH2BQ7Z745 1585 aa19.57■□□□□ 0.72
SMARCA4-209ENST00000586122 BAZ1BQ9UIG0 1483 aaKnown RBP19.53■□□□□ 0.72
SMARCA4-209ENST00000586122 WIZO95785 1651 aa19.36■□□□□ 0.69
SMARCA4-209ENST00000586122 RSF1Q96T23 1441 aaPredicted RBP19.32■□□□□ 0.68
SMARCA4-209ENST00000586122 LAMC3Q9Y6N6 1575 aa19.24■□□□□ 0.67
SMARCA4-209ENST00000586122 ERCC6Q03468 1493 aa19.21■□□□□ 0.67
SMARCA4-209ENST00000586122 TOP2AP11388 1531 aaKnown RBP19.2■□□□□ 0.66
SMARCA4-209ENST00000586122 NESP48681 1621 aa19.18■□□□□ 0.66
SMARCA4-209ENST00000586122 CADPSQ9ULU8 1353 aa19.11■□□□□ 0.65
SMARCA4-209ENST00000586122 PDS5BQ9NTI5 1447 aa19.1■□□□□ 0.65
SMARCA4-209ENST00000586122 CUX2O14529 1486 aa19.09■□□□□ 0.65
SMARCA4-209ENST00000586122 KIF21AQ7Z4S6 1674 aa19.01■□□□□ 0.63
SMARCA4-209ENST00000586122 THOC2Q8NI27 1593 aaKnown RBP18.99■□□□□ 0.63
SMARCA4-209ENST00000586122 CFTRP13569 1480 aa18.99■□□□□ 0.63
SMARCA4-209ENST00000586122 CCDC88BA6NC98 1476 aa18.92■□□□□ 0.62
SMARCA4-209ENST00000586122 PRDM2Q13029 1718 aa18.91■□□□□ 0.62
SMARCA4-209ENST00000586122 CEP164Q9UPV0 1460 aa18.9■□□□□ 0.62
SMARCA4-209ENST00000586122 FANCD2Q9BXW9 1451 aa18.89■□□□□ 0.61
SMARCA4-209ENST00000586122 MRC2Q9UBG0 1479 aa18.89■□□□□ 0.61
SMARCA4-209ENST00000586122 WDR62O43379 1518 aa18.84■□□□□ 0.61
SMARCA4-209ENST00000586122 SUPT5HO00267 1087 aaKnown RBP18.68■□□□□ 0.58
SMARCA4-209ENST00000586122 URB2Q14146 1524 aaKnown RBP18.68■□□□□ 0.58
SMARCA4-209ENST00000586122 ABCC8Q09428 1581 aa18.66■□□□□ 0.58
SMARCA4-209ENST00000586122 DNMBPQ6XZF7 1577 aa18.58■□□□□ 0.56
SMARCA4-209ENST00000586122 TOPBP1Q92547 1522 aa18.58■□□□□ 0.56
SMARCA4-209ENST00000586122 DNAJC5Q9H3Z4 198 aa18.55■□□□□ 0.56
SMARCA4-209ENST00000586122 IFT140Q96RY7 1462 aa18.52■□□□□ 0.55
SMARCA4-209ENST00000586122 POLA1P09884 1462 aaPredicted RBP18.4■□□□□ 0.54
SMARCA4-209ENST00000586122 TARBP1Q13395 1621 aaKnown RBP18.39■□□□□ 0.53
SMARCA4-209ENST00000586122 CUX1P39880 1505 aa18.38■□□□□ 0.53
SMARCA4-209ENST00000586122 ZNF608Q9ULD9 1512 aaPredicted RBP18.36■□□□□ 0.53
SMARCA4-209ENST00000586122 WDR97A6NE52 1622 aa18.34■□□□□ 0.53
SMARCA4-209ENST00000586122 EIF4G3O43432 1585 aaKnown RBP18.34■□□□□ 0.53
SMARCA4-209ENST00000586122 FGD5Q6ZNL6 1462 aa18.34■□□□□ 0.53
SMARCA4-209ENST00000586122 SOGA1O94964 1423 aa18.32■□□□□ 0.52
SMARCA4-209ENST00000586122 RAD54L2Q9Y4B4 1467 aa18.27■□□□□ 0.52
SMARCA4-209ENST00000586122 WRNQ14191 1432 aaPredicted RBP eCLIP18.25■□□□□ 0.51
SMARCA4-209ENST00000586122 BIVM-ERCC5R4GMW8 1640 aa18.25■□□□□ 0.51
SMARCA4-209ENST00000586122 TOP2BQ02880 1626 aa18.24■□□□□ 0.51
SMARCA4-209ENST00000586122 AQRO60306 1485 aaKnown RBP eCLIP18.24■□□□□ 0.513e-8■■■■□ 26.1
SMARCA4-209ENST00000586122 OSCARQ8IYS5 282 aa18.23■□□□□ 0.51
SMARCA4-209ENST00000586122 ABCA10Q8WWZ4 1543 aa18.2■□□□□ 0.5
SMARCA4-209ENST00000586122 TDRD9Q8NDG6 1382 aaKnown RBP18.19■□□□□ 0.5
SMARCA4-209ENST00000586122 SYNJ1O43426 1573 aa18.18■□□□□ 0.5
SMARCA4-209ENST00000586122 GRIN2BQ13224 1484 aa18.15■□□□□ 0.5
SMARCA4-209ENST00000586122 MAGI1Q96QZ7 1491 aaPredicted RBP18.14■□□□□ 0.5
SMARCA4-209ENST00000586122 ABCA5Q8WWZ7 1642 aa18.13■□□□□ 0.49
SMARCA4-209ENST00000586122 CHD1O14646 1710 aa18.13■□□□□ 0.49
SMARCA4-209ENST00000586122 GAPVD1Q14C86 1478 aa18.13■□□□□ 0.49
SMARCA4-209ENST00000586122 PBRM1Q86U86 1689 aa18.12■□□□□ 0.49
SMARCA4-209ENST00000586122 SNAPC4Q5SXM2 1469 aa18.11■□□□□ 0.49
SMARCA4-209ENST00000586122 SYNJ2O15056 1496 aa18.05■□□□□ 0.48
SMARCA4-209ENST00000586122 FBLN2P98095 1184 aa18.03■□□□□ 0.48
SMARCA4-209ENST00000586122 CHMP7Q8WUX9 453 aaPredicted RBP18.01■□□□□ 0.47
SMARCA4-209ENST00000586122 ERICH3Q5RHP9 1530 aa18■□□□□ 0.47
SMARCA4-209ENST00000586122 ADAMTS12P58397 1594 aa17.96■□□□□ 0.47
SMARCA4-209ENST00000586122 RIMBP3CA6NJZ7 1639 aa17.94■□□□□ 0.46
SMARCA4-209ENST00000586122 RIMBP3BA6NNM3 1639 aa17.94■□□□□ 0.46
SMARCA4-209ENST00000586122 RIMBP3Q9UFD9 1639 aa17.94■□□□□ 0.46
SMARCA4-209ENST00000586122 CLASP1Q7Z460 1538 aa17.94■□□□□ 0.46
SMARCA4-209ENST00000586122 ARHGEF11O15085 1522 aa17.93■□□□□ 0.46
SMARCA4-209ENST00000586122 FHAD1B1AJZ9 1412 aa17.93■□□□□ 0.46
SMARCA4-209ENST00000586122 GRIN2AQ12879 1464 aa17.91■□□□□ 0.46
SMARCA4-209ENST00000586122 KIF27Q86VH2 1401 aa17.89■□□□□ 0.46
SMARCA4-209ENST00000586122 NUP160Q12769 1436 aa17.85■□□□□ 0.45
SMARCA4-209ENST00000586122 CUL7Q14999 1698 aa17.83■□□□□ 0.45
SMARCA4-209ENST00000586122 TRIM41Q8WV44 630 aa17.83■□□□□ 0.44
SMARCA4-209ENST00000586122 CEP170Q5SW79 1584 aa17.8■□□□□ 0.44
SMARCA4-209ENST00000586122 IGF1RP08069 1367 aa17.79■□□□□ 0.44
SMARCA4-209ENST00000586122 ARAP1Q96P48 1450 aa17.76■□□□□ 0.43
SMARCA4-209ENST00000586122 SHROOM2Q13796 1616 aa17.74■□□□□ 0.43
SMARCA4-209ENST00000586122 CYB5RLQ6IPT4 315 aa17.72■□□□□ 0.43
SMARCA4-209ENST00000586122 RUSC2Q8N2Y8 1516 aa17.7■□□□□ 0.42
SMARCA4-209ENST00000586122 CARMIL1Q5VZK9 1371 aa17.69■□□□□ 0.42
SMARCA4-209ENST00000586122 KIAA0586Q9BVV6 1533 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms