RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 NISCHQ9Y2I1 1504 aa29.3■■■□□ 2.28
LIG3-207ENST00000586119 ABCC9O60706 1549 aa26.5■■□□□ 1.83
LIG3-207ENST00000586119 CCDC180Q9P1Z9 1646 aa26.23■■□□□ 1.79
LIG3-207ENST00000586119 DNAJC5BQ9UF47 199 aa25.08■■□□□ 1.61
LIG3-207ENST00000586119 RB1CC1Q8TDY2 1594 aa25.05■■□□□ 1.6
LIG3-207ENST00000586119 DCAF8L2P0C7V8 631 aa24.94■■□□□ 1.58
LIG3-207ENST00000586119 NACADO15069 1562 aa24.84■■□□□ 1.57
LIG3-207ENST00000586119 PABPN1Q86U42 306 aaKnown RBP eCLIP24.74■■□□□ 1.55
LIG3-207ENST00000586119 UNC13AQ9UPW8 1703 aa24.61■■□□□ 1.53
LIG3-207ENST00000586119 BICRAQ9NZM4 1560 aa24.42■■□□□ 1.5
LIG3-207ENST00000586119 MYO15BQ96JP2 1530 aa24.41■■□□□ 1.5
LIG3-207ENST00000586119 ZCCHC6Q5VYS8 1495 aaKnown RBP24.23■■□□□ 1.47
LIG3-207ENST00000586119 DCAF1Q9Y4B6 1507 aa24.1■■□□□ 1.45
LIG3-207ENST00000586119 SCRIBQ14160 1630 aa24.03■■□□□ 1.44
LIG3-207ENST00000586119 CC2D2AQ9P2K1 1620 aa23.89■■□□□ 1.42
LIG3-207ENST00000586119 SHROOM4Q9ULL8 1493 aa23.86■■□□□ 1.41
LIG3-207ENST00000586119 CECR2Q9BXF3 1484 aa23.82■■□□□ 1.4
LIG3-207ENST00000586119 EIF4G1Q04637 1599 aaKnown RBP23.78■■□□□ 1.4
LIG3-207ENST00000586119 NCAPD3P42695 1498 aa22.98■■□□□ 1.27
LIG3-207ENST00000586119 DNAJC5Q9H3Z4 198 aa22.97■■□□□ 1.27
LIG3-207ENST00000586119 ATAD2BQ9ULI0 1458 aa22.93■■□□□ 1.26
LIG3-207ENST00000586119 SMARCA4P51532 1647 aa22.86■■□□□ 1.25
LIG3-207ENST00000586119 ERCC6Q03468 1493 aa22.8■■□□□ 1.24
LIG3-207ENST00000586119 SMARCA2P51531 1590 aa22.78■■□□□ 1.24
LIG3-207ENST00000586119 NESP48681 1621 aa22.77■■□□□ 1.24
LIG3-207ENST00000586119 HMGXB3Q12766 1538 aa22.74■■□□□ 1.23
LIG3-207ENST00000586119 CUX2O14529 1486 aa22.73■■□□□ 1.23
LIG3-207ENST00000586119 BAZ1AQ9NRL2 1556 aaPredicted RBP22.69■■□□□ 1.22
LIG3-207ENST00000586119 BAZ1BQ9UIG0 1483 aaKnown RBP22.67■■□□□ 1.22
LIG3-207ENST00000586119 MROH2BQ7Z745 1585 aa22.63■■□□□ 1.21
LIG3-207ENST00000586119 PEG3Q9GZU2 1588 aa22.59■■□□□ 1.21
LIG3-207ENST00000586119 THOC2Q8NI27 1593 aaKnown RBP22.45■■□□□ 1.18
LIG3-207ENST00000586119 LAMC3Q9Y6N6 1575 aa22.44■■□□□ 1.18
LIG3-207ENST00000586119 KIF21AQ7Z4S6 1674 aa22.42■■□□□ 1.18
LIG3-207ENST00000586119 WIZO95785 1651 aa22.37■■□□□ 1.17
LIG3-207ENST00000586119 PDS5BQ9NTI5 1447 aa22.33■■□□□ 1.17
LIG3-207ENST00000586119 CADPSQ9ULU8 1353 aa22.31■■□□□ 1.16
LIG3-207ENST00000586119 MRC2Q9UBG0 1479 aa22.16■■□□□ 1.14
LIG3-207ENST00000586119 RSF1Q96T23 1441 aaPredicted RBP22.12■■□□□ 1.13
LIG3-207ENST00000586119 WDR62O43379 1518 aa22.1■■□□□ 1.13
LIG3-207ENST00000586119 FANCD2Q9BXW9 1451 aa22.05■■□□□ 1.12
LIG3-207ENST00000586119 CEP164Q9UPV0 1460 aa22.04■■□□□ 1.12
LIG3-207ENST00000586119 CFTRP13569 1480 aa22.01■■□□□ 1.11
LIG3-207ENST00000586119 TRIM41Q8WV44 630 aa21.99■■□□□ 1.11
LIG3-207ENST00000586119 TOP2AP11388 1531 aaKnown RBP21.98■■□□□ 1.11
LIG3-207ENST00000586119 URB2Q14146 1524 aaKnown RBP21.91■■□□□ 1.1
LIG3-207ENST00000586119 CCDC88BA6NC98 1476 aa21.82■■□□□ 1.08
LIG3-207ENST00000586119 OSCARQ8IYS5 282 aa21.79■■□□□ 1.08
LIG3-207ENST00000586119 PRDM2Q13029 1718 aa21.75■■□□□ 1.07
LIG3-207ENST00000586119 ZNF608Q9ULD9 1512 aaPredicted RBP21.69■■□□□ 1.06
LIG3-207ENST00000586119 TOPBP1Q92547 1522 aa21.63■■□□□ 1.05
LIG3-207ENST00000586119 IFT140Q96RY7 1462 aa21.6■■□□□ 1.05
LIG3-207ENST00000586119 RIMBP3CA6NJZ7 1639 aa21.51■■□□□ 1.03
LIG3-207ENST00000586119 RIMBP3BA6NNM3 1639 aa21.51■■□□□ 1.03
LIG3-207ENST00000586119 RIMBP3Q9UFD9 1639 aa21.51■■□□□ 1.03
LIG3-207ENST00000586119 DNMBPQ6XZF7 1577 aa21.5■■□□□ 1.03
LIG3-207ENST00000586119 AQRO60306 1485 aaKnown RBP eCLIP21.49■■□□□ 1.031e-6■■■■■ 34.4
LIG3-207ENST00000586119 ABCC8Q09428 1581 aa21.48■■□□□ 1.03
LIG3-207ENST00000586119 EIF4G3O43432 1585 aaKnown RBP21.48■■□□□ 1.03
LIG3-207ENST00000586119 TARBP1Q13395 1621 aaKnown RBP21.44■■□□□ 1.02
LIG3-207ENST00000586119 ARHGEF11O15085 1522 aa21.41■■□□□ 1.02
LIG3-207ENST00000586119 POLA1P09884 1462 aaPredicted RBP21.4■■□□□ 1.02
LIG3-207ENST00000586119 RAD54L2Q9Y4B4 1467 aa21.4■■□□□ 1.02
LIG3-207ENST00000586119 CHD1O14646 1710 aa21.39■■□□□ 1.01
LIG3-207ENST00000586119 FBLN2P98095 1184 aa21.38■■□□□ 1.01
LIG3-207ENST00000586119 CYB5RLQ6IPT4 315 aa21.36■■□□□ 1.01
LIG3-207ENST00000586119 TDRD9Q8NDG6 1382 aaKnown RBP21.35■■□□□ 1.01
LIG3-207ENST00000586119 SOGA1O94964 1423 aa21.33■■□□□ 1.01
LIG3-207ENST00000586119 FGD5Q6ZNL6 1462 aa21.26■□□□□ 0.99
LIG3-207ENST00000586119 CUX1P39880 1505 aa21.25■□□□□ 0.99
LIG3-207ENST00000586119 ARAP1Q96P48 1450 aa21.22■□□□□ 0.99
LIG3-207ENST00000586119 SNAPC4Q5SXM2 1469 aa21.21■□□□□ 0.99
LIG3-207ENST00000586119 SUPT5HO00267 1087 aaKnown RBP21.18■□□□□ 0.98
LIG3-207ENST00000586119 CHMP7Q8WUX9 453 aaPredicted RBP21.16■□□□□ 0.98
LIG3-207ENST00000586119 TRHP20396 242 aaPredicted RBP21.13■□□□□ 0.97
LIG3-207ENST00000586119 CLASP1Q7Z460 1538 aa21.09■□□□□ 0.97
LIG3-207ENST00000586119 GRIN2BQ13224 1484 aa21.09■□□□□ 0.97
LIG3-207ENST00000586119 WDR97A6NE52 1622 aa21.07■□□□□ 0.96
LIG3-207ENST00000586119 MAGI1Q96QZ7 1491 aaPredicted RBP21.07■□□□□ 0.96
LIG3-207ENST00000586119 GAPVD1Q14C86 1478 aa21.04■□□□□ 0.96
LIG3-207ENST00000586119 PBRM1Q86U86 1689 aa21.03■□□□□ 0.96
LIG3-207ENST00000586119 SYNJ1O43426 1573 aa21.03■□□□□ 0.96
LIG3-207ENST00000586119 SYNJ2O15056 1496 aa21.03■□□□□ 0.96
LIG3-207ENST00000586119 ABCA10Q8WWZ4 1543 aa20.98■□□□□ 0.95
LIG3-207ENST00000586119 ABCA5Q8WWZ7 1642 aa20.95■□□□□ 0.94
LIG3-207ENST00000586119 ERCC6L2Q5T890 1561 aa20.87■□□□□ 0.93
LIG3-207ENST00000586119 WRNQ14191 1432 aaPredicted RBP eCLIP20.87■□□□□ 0.93
LIG3-207ENST00000586119 GRIN2AQ12879 1464 aa20.83■□□□□ 0.93
LIG3-207ENST00000586119 TOP2BQ02880 1626 aa20.82■□□□□ 0.92
LIG3-207ENST00000586119 BIVM-ERCC5R4GMW8 1640 aa20.82■□□□□ 0.92
LIG3-207ENST00000586119 ADAMTS12P58397 1594 aa20.8■□□□□ 0.92
LIG3-207ENST00000586119 CEP170Q5SW79 1584 aa20.8■□□□□ 0.92
LIG3-207ENST00000586119 NUP160Q12769 1436 aa20.77■□□□□ 0.91
LIG3-207ENST00000586119 FHAD1B1AJZ9 1412 aa20.75■□□□□ 0.91
LIG3-207ENST00000586119 ERICH3Q5RHP9 1530 aa20.68■□□□□ 0.9
LIG3-207ENST00000586119 SHROOM2Q13796 1616 aa20.67■□□□□ 0.9
LIG3-207ENST00000586119 JPH4Q96JJ6 628 aa20.64■□□□□ 0.89
LIG3-207ENST00000586119 PRG4Q92954 1404 aaPredicted RBP20.61■□□□□ 0.89
LIG3-207ENST00000586119 AEBP2Q6ZN18 517 aaPredicted RBP20.53■□□□□ 0.88
LIG3-207ENST00000586119 KIF13AQ9H1H9 1805 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms