RNA–Protein interactions for RNA: ENST00000586084.1

PLEKHM1-214, Transcript of pleckstrin homology and RUN domain containing M1, human

TSL 4

Gene PLEKHM1, Length 553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PLEKHM1-214	ENST00000586084	NISCH	Q9Y2I1	1504 aa		55.21	■■■■■ 6.43
PLEKHM1-214	ENST00000586084	ABCC9	O60706	1549 aa		49.77	■■■■■ 5.56
PLEKHM1-214	ENST00000586084	CCDC180	Q9P1Z9	1646 aa		49.74	■■■■■ 5.55
PLEKHM1-214	ENST00000586084	RB1CC1	Q8TDY2	1594 aa		47.39	■■■■■ 5.18
PLEKHM1-214	ENST00000586084	NACAD	O15069	1562 aa		47.02	■■■■■ 5.12
PLEKHM1-214	ENST00000586084	DNAJC5B	Q9UF47	199 aa		46.74	■■■■■ 5.07
PLEKHM1-214	ENST00000586084	DCAF8L2	P0C7V8	631 aa		46.63	■■■■■ 5.06
PLEKHM1-214	ENST00000586084	UNC13A	Q9UPW8	1703 aa		46.34	■■■■■ 5.01
PLEKHM1-214	ENST00000586084	MYO15B	Q96JP2	1530 aa		46.31	■■■■■ 5
PLEKHM1-214	ENST00000586084	PABPN1	Q86U42	306 aa	Known RBP eCLIP	46.25	■■■■■ 4.99
PLEKHM1-214	ENST00000586084	BICRA	Q9NZM4	1560 aa		45.94	■■■■■ 4.94
PLEKHM1-214	ENST00000586084	ZCCHC6	Q5VYS8	1495 aa	Known RBP	45.72	■■■■■ 4.91
PLEKHM1-214	ENST00000586084	DCAF1	Q9Y4B6	1507 aa		45.64	■■■■■ 4.9
PLEKHM1-214	ENST00000586084	SHROOM4	Q9ULL8	1493 aa		45.4	■■■■■ 4.86
PLEKHM1-214	ENST00000586084	SCRIB	Q14160	1630 aa		45.21	■■■■■ 4.83
PLEKHM1-214	ENST00000586084	CC2D2A	Q9P2K1	1620 aa		45	■■■■■ 4.79
PLEKHM1-214	ENST00000586084	CECR2	Q9BXF3	1484 aa		44.87	■■■■■ 4.77
PLEKHM1-214	ENST00000586084	EIF4G1	Q04637	1599 aa	Known RBP	44.86	■■■■■ 4.77
PLEKHM1-214	ENST00000586084	NCAPD3	P42695	1498 aa		43.35	■■■■■ 4.53
PLEKHM1-214	ENST00000586084	ATAD2B	Q9ULI0	1458 aa		43.18	■■■■■ 4.5
PLEKHM1-214	ENST00000586084	DNAJC5	Q9H3Z4	198 aa		43.14	■■■■■ 4.5
PLEKHM1-214	ENST00000586084	SMARCA4	P51532	1647 aa		43.14	■■■■■ 4.5
PLEKHM1-214	ENST00000586084	SMARCA2	P51531	1590 aa		43.12	■■■■■ 4.49
PLEKHM1-214	ENST00000586084	HMGXB3	Q12766	1538 aa		43.06	■■■■■ 4.48
PLEKHM1-214	ENST00000586084	ERCC6	Q03468	1493 aa		43.04	■■■■■ 4.48
PLEKHM1-214	ENST00000586084	CUX2	O14529	1486 aa		43.03	■■■■■ 4.48
PLEKHM1-214	ENST00000586084	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	42.91	■■■■■ 4.46
PLEKHM1-214	ENST00000586084	BAZ1B	Q9UIG0	1483 aa	Known RBP	42.8	■■■■■ 4.44
PLEKHM1-214	ENST00000586084	PEG3	Q9GZU2	1588 aa		42.73	■■■■■ 4.43
PLEKHM1-214	ENST00000586084	NES	P48681	1621 aa		42.68	■■■■■ 4.42
PLEKHM1-214	ENST00000586084	MROH2B	Q7Z745	1585 aa		42.51	■■■■■ 4.4
PLEKHM1-214	ENST00000586084	LAMC3	Q9Y6N6	1575 aa		42.47	■■■■■ 4.39
PLEKHM1-214	ENST00000586084	THOC2	Q8NI27	1593 aa	Known RBP	42.36	■■■■■ 4.37
PLEKHM1-214	ENST00000586084	KIF21A	Q7Z4S6	1674 aa		42.23	■■■■■ 4.35
PLEKHM1-214	ENST00000586084	PDS5B	Q9NTI5	1447 aa		42.19	■■■■■ 4.34
PLEKHM1-214	ENST00000586084	WIZ	O95785	1651 aa		42.03	■■■■■ 4.32
PLEKHM1-214	ENST00000586084	CADPS	Q9ULU8	1353 aa		42.01	■■■■■ 4.32
PLEKHM1-214	ENST00000586084	MRC2	Q9UBG0	1479 aa		41.83	■■■■■ 4.29
PLEKHM1-214	ENST00000586084	WDR62	O43379	1518 aa		41.74	■■■■■ 4.27
PLEKHM1-214	ENST00000586084	CEP164	Q9UPV0	1460 aa		41.64	■■■■■ 4.26
PLEKHM1-214	ENST00000586084	FANCD2	Q9BXW9	1451 aa		41.55	■■■■■ 4.24
PLEKHM1-214	ENST00000586084	RSF1	Q96T23	1441 aa	Predicted RBP	41.55	■■■■■ 4.24
PLEKHM1-214	ENST00000586084	CFTR	P13569	1480 aa		41.51	■■■■■ 4.24
PLEKHM1-214	ENST00000586084	TOP2A	P11388	1531 aa	Known RBP	41.5	■■■■■ 4.23
PLEKHM1-214	ENST00000586084	PRDM2	Q13029	1718 aa		41.24	■■■■■ 4.19
PLEKHM1-214	ENST00000586084	URB2	Q14146	1524 aa	Known RBP	41.19	■■■■■ 4.18
PLEKHM1-214	ENST00000586084	TRIM41	Q8WV44	630 aa		41.17	■■■■■ 4.18
PLEKHM1-214	ENST00000586084	OSCAR	Q8IYS5	282 aa		41	■■■■■ 4.15
PLEKHM1-214	ENST00000586084	CCDC88B	A6NC98	1476 aa		40.98	■■■■■ 4.15
PLEKHM1-214	ENST00000586084	IFT140	Q96RY7	1462 aa		40.81	■■■■■ 4.12
PLEKHM1-214	ENST00000586084	TOPBP1	Q92547	1522 aa		40.75	■■■■■ 4.11
PLEKHM1-214	ENST00000586084	ABCC8	Q09428	1581 aa		40.72	■■■■■ 4.11
PLEKHM1-214	ENST00000586084	ZNF608	Q9ULD9	1512 aa	Predicted RBP	40.7	■■■■■ 4.11
PLEKHM1-214	ENST00000586084	DNMBP	Q6XZF7	1577 aa		40.62	■■■■■ 4.09
PLEKHM1-214	ENST00000586084	EIF4G3	O43432	1585 aa	Known RBP	40.54	■■■■■ 4.08
PLEKHM1-214	ENST00000586084	RIMBP3C	A6NJZ7	1639 aa		40.51	■■■■■ 4.08
PLEKHM1-214	ENST00000586084	RIMBP3B	A6NNM3	1639 aa		40.51	■■■■■ 4.08
PLEKHM1-214	ENST00000586084	RIMBP3	Q9UFD9	1639 aa		40.51	■■■■■ 4.08
PLEKHM1-214	ENST00000586084	TARBP1	Q13395	1621 aa	Known RBP	40.42	■■■■■ 4.06
PLEKHM1-214	ENST00000586084	ARHGEF11	O15085	1522 aa		40.35	■■■■■ 4.05
PLEKHM1-214	ENST00000586084	CHD1	O14646	1710 aa		40.31	■■■■■ 4.04
PLEKHM1-214	ENST00000586084	AQR	O60306	1485 aa	Known RBP eCLIP	40.31	■■■■■ 4.04
PLEKHM1-214	ENST00000586084	POLA1	P09884	1462 aa	Predicted RBP	40.31	■■■■■ 4.04
PLEKHM1-214	ENST00000586084	RAD54L2	Q9Y4B4	1467 aa		40.13	■■■■■ 4.01
PLEKHM1-214	ENST00000586084	SOGA1	O94964	1423 aa		40.12	■■■■■ 4.01
PLEKHM1-214	ENST00000586084	FBLN2	P98095	1184 aa		40.1	■■■■■ 4.01
PLEKHM1-214	ENST00000586084	WDR97	A6NE52	1622 aa		40.07	■■■■■ 4.01
PLEKHM1-214	ENST00000586084	FGD5	Q6ZNL6	1462 aa		40.04	■■■■■ 4
PLEKHM1-214	ENST00000586084	TDRD9	Q8NDG6	1382 aa	Known RBP	40.03	■■■■■ 4
PLEKHM1-214	ENST00000586084	CYB5RL	Q6IPT4	315 aa		40.02	■■■■■ 4
PLEKHM1-214	ENST00000586084	CUX1	P39880	1505 aa		39.96	■■■■□ 3.99
PLEKHM1-214	ENST00000586084	SNAPC4	Q5SXM2	1469 aa		39.93	■■■■□ 3.98
PLEKHM1-214	ENST00000586084	ARAP1	Q96P48	1450 aa		39.91	■■■■□ 3.98
PLEKHM1-214	ENST00000586084	MAGI1	Q96QZ7	1491 aa	Predicted RBP	39.86	■■■■□ 3.97
PLEKHM1-214	ENST00000586084	GRIN2B	Q13224	1484 aa		39.81	■■■■□ 3.96
PLEKHM1-214	ENST00000586084	SYNJ1	O43426	1573 aa		39.8	■■■■□ 3.96
PLEKHM1-214	ENST00000586084	CHMP7	Q8WUX9	453 aa	Predicted RBP	39.79	■■■■□ 3.96
PLEKHM1-214	ENST00000586084	CLASP1	Q7Z460	1538 aa		39.79	■■■■□ 3.96
PLEKHM1-214	ENST00000586084	SYNJ2	O15056	1496 aa		39.72	■■■■□ 3.95
PLEKHM1-214	ENST00000586084	PBRM1	Q86U86	1689 aa		39.72	■■■■□ 3.95
PLEKHM1-214	ENST00000586084	TRH	P20396	242 aa	Predicted RBP	39.66	■■■■□ 3.94
PLEKHM1-214	ENST00000586084	GAPVD1	Q14C86	1478 aa		39.65	■■■■□ 3.94
PLEKHM1-214	ENST00000586084	ABCA10	Q8WWZ4	1543 aa		39.59	■■■■□ 3.93
PLEKHM1-214	ENST00000586084	ABCA5	Q8WWZ7	1642 aa		39.57	■■■■□ 3.92
PLEKHM1-214	ENST00000586084	SUPT5H	O00267	1087 aa	Known RBP	39.56	■■■■□ 3.92
PLEKHM1-214	ENST00000586084	WRN	Q14191	1432 aa	Predicted RBP eCLIP	39.4	■■■■□ 3.9
PLEKHM1-214	ENST00000586084	BIVM-ERCC5	R4GMW8	1640 aa		39.36	■■■■□ 3.89
PLEKHM1-214	ENST00000586084	TOP2B	Q02880	1626 aa		39.32	■■■■□ 3.88
PLEKHM1-214	ENST00000586084	GRIN2A	Q12879	1464 aa		39.3	■■■■□ 3.88
PLEKHM1-214	ENST00000586084	ADAMTS12	P58397	1594 aa		39.28	■■■■□ 3.88
PLEKHM1-214	ENST00000586084	NUP160	Q12769	1436 aa		39.16	■■■■□ 3.86
PLEKHM1-214	ENST00000586084	CEP170	Q5SW79	1584 aa		39.16	■■■■□ 3.86
PLEKHM1-214	ENST00000586084	FHAD1	B1AJZ9	1412 aa		39.14	■■■■□ 3.86
PLEKHM1-214	ENST00000586084	ERICH3	Q5RHP9	1530 aa		39.12	■■■■□ 3.85
PLEKHM1-214	ENST00000586084	ERCC6L2	Q5T890	1561 aa		39.1	■■■■□ 3.85
PLEKHM1-214	ENST00000586084	SHROOM2	Q13796	1616 aa		39.06	■■■■□ 3.84
PLEKHM1-214	ENST00000586084	PRG4	Q92954	1404 aa	Predicted RBP	38.8	■■■■□ 3.8
PLEKHM1-214	ENST00000586084	JPH4	Q96JJ6	628 aa		38.74	■■■■□ 3.79
PLEKHM1-214	ENST00000586084	RUSC2	Q8N2Y8	1516 aa		38.73	■■■■□ 3.79
PLEKHM1-214	ENST00000586084	AEBP2	Q6ZN18	517 aa	Predicted RBP	38.67	■■■■□ 3.78

Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms