RNA–Protein interactions for RNA: ENST00000585967.5

MBD3-204, Transcript of methyl-CpG binding domain protein 3, humanhuman

TSL 4

Gene MBD3, Length 583 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3-204ENST00000585967 NISCHQ9Y2I1 1504 aa42.36■■■■■ 4.37
MBD3-204ENST00000585967 CCDC180Q9P1Z9 1646 aa38.17■■■■□ 3.7
MBD3-204ENST00000585967 ABCC9O60706 1549 aa37.7■■■■□ 3.63
MBD3-204ENST00000585967 RB1CC1Q8TDY2 1594 aa36.17■■■■□ 3.38
MBD3-204ENST00000585967 NACADO15069 1562 aa35.93■■■■□ 3.34
MBD3-204ENST00000585967 DCAF8L2P0C7V8 631 aa35.55■■■■□ 3.28
MBD3-204ENST00000585967 MYO15BQ96JP2 1530 aa35.5■■■■□ 3.27
MBD3-204ENST00000585967 UNC13AQ9UPW8 1703 aa35.37■■■■□ 3.25
MBD3-204ENST00000585967 ZCCHC6Q5VYS8 1495 aaKnown RBP35.16■■■■□ 3.22
MBD3-204ENST00000585967 DCAF1Q9Y4B6 1507 aa35.1■■■■□ 3.21
MBD3-204ENST00000585967 PABPN1Q86U42 306 aaKnown RBP eCLIP34.98■■■■□ 3.19
MBD3-204ENST00000585967 BICRAQ9NZM4 1560 aa34.93■■■■□ 3.18
MBD3-204ENST00000585967 DNAJC5BQ9UF47 199 aa34.93■■■■□ 3.18
MBD3-204ENST00000585967 SHROOM4Q9ULL8 1493 aa34.71■■■■□ 3.15
MBD3-204ENST00000585967 SCRIBQ14160 1630 aa34.62■■■■□ 3.13
MBD3-204ENST00000585967 CC2D2AQ9P2K1 1620 aa34.16■■■■□ 3.06
MBD3-204ENST00000585967 EIF4G1Q04637 1599 aaKnown RBP34.14■■■■□ 3.06
MBD3-204ENST00000585967 CECR2Q9BXF3 1484 aa33.99■■■■□ 3.03
MBD3-204ENST00000585967 SMARCA4P51532 1647 aa33.08■■■□□ 2.89
MBD3-204ENST00000585967 NCAPD3P42695 1498 aa33.05■■■□□ 2.88
MBD3-204ENST00000585967 SMARCA2P51531 1590 aa33.04■■■□□ 2.88
MBD3-204ENST00000585967 BAZ1AQ9NRL2 1556 aaPredicted RBP32.97■■■□□ 2.87
MBD3-204ENST00000585967 ATAD2BQ9ULI0 1458 aa32.95■■■□□ 2.87
MBD3-204ENST00000585967 HMGXB3Q12766 1538 aa32.95■■■□□ 2.87
MBD3-204ENST00000585967 PEG3Q9GZU2 1588 aa32.76■■■□□ 2.84
MBD3-204ENST00000585967 BAZ1BQ9UIG0 1483 aaKnown RBP32.74■■■□□ 2.83
MBD3-204ENST00000585967 ERCC6Q03468 1493 aa32.67■■■□□ 2.82
MBD3-204ENST00000585967 MROH2BQ7Z745 1585 aa32.57■■■□□ 2.8
MBD3-204ENST00000585967 CUX2O14529 1486 aa32.55■■■□□ 2.8
MBD3-204ENST00000585967 LAMC3Q9Y6N6 1575 aa32.43■■■□□ 2.78
MBD3-204ENST00000585967 NESP48681 1621 aa32.38■■■□□ 2.77
MBD3-204ENST00000585967 WIZO95785 1651 aa32.27■■■□□ 2.76
MBD3-204ENST00000585967 KIF21AQ7Z4S6 1674 aa32.2■■■□□ 2.74
MBD3-204ENST00000585967 THOC2Q8NI27 1593 aaKnown RBP32.19■■■□□ 2.74
MBD3-204ENST00000585967 PDS5BQ9NTI5 1447 aa32.17■■■□□ 2.74
MBD3-204ENST00000585967 DNAJC5Q9H3Z4 198 aa32.13■■■□□ 2.73
MBD3-204ENST00000585967 CADPSQ9ULU8 1353 aa32.04■■■□□ 2.72
MBD3-204ENST00000585967 RSF1Q96T23 1441 aaPredicted RBP31.93■■■□□ 2.7
MBD3-204ENST00000585967 TOP2AP11388 1531 aaKnown RBP31.93■■■□□ 2.7
MBD3-204ENST00000585967 MRC2Q9UBG0 1479 aa31.86■■■□□ 2.69
MBD3-204ENST00000585967 CEP164Q9UPV0 1460 aa31.8■■■□□ 2.68
MBD3-204ENST00000585967 WDR62O43379 1518 aa31.79■■■□□ 2.68
MBD3-204ENST00000585967 PRDM2Q13029 1718 aa31.76■■■□□ 2.67
MBD3-204ENST00000585967 CFTRP13569 1480 aa31.73■■■□□ 2.67
MBD3-204ENST00000585967 FANCD2Q9BXW9 1451 aa31.71■■■□□ 2.67
MBD3-204ENST00000585967 CCDC88BA6NC98 1476 aa31.43■■■□□ 2.62
MBD3-204ENST00000585967 URB2Q14146 1524 aaKnown RBP31.39■■■□□ 2.61
MBD3-204ENST00000585967 ABCC8Q09428 1581 aa31.22■■■□□ 2.59
MBD3-204ENST00000585967 IFT140Q96RY7 1462 aa31.14■■■□□ 2.57
MBD3-204ENST00000585967 TOPBP1Q92547 1522 aa31.13■■■□□ 2.57
MBD3-204ENST00000585967 DNMBPQ6XZF7 1577 aa31.13■■■□□ 2.57
MBD3-204ENST00000585967 OSCARQ8IYS5 282 aa30.98■■■□□ 2.55
MBD3-204ENST00000585967 EIF4G3O43432 1585 aaKnown RBP30.96■■■□□ 2.55
MBD3-204ENST00000585967 ZNF608Q9ULD9 1512 aaPredicted RBP30.93■■■□□ 2.54
MBD3-204ENST00000585967 TARBP1Q13395 1621 aaKnown RBP30.87■■■□□ 2.53
MBD3-204ENST00000585967 TRIM41Q8WV44 630 aa30.81■■■□□ 2.52
MBD3-204ENST00000585967 POLA1P09884 1462 aaPredicted RBP30.81■■■□□ 2.52
MBD3-204ENST00000585967 WDR97A6NE52 1622 aa30.76■■■□□ 2.51
MBD3-204ENST00000585967 CHD1O14646 1710 aa30.74■■■□□ 2.51
MBD3-204ENST00000585967 AQRO60306 1485 aaKnown RBP eCLIP30.66■■■□□ 2.51e-8■■■■□ 20.9
MBD3-204ENST00000585967 FGD5Q6ZNL6 1462 aa30.66■■■□□ 2.5
MBD3-204ENST00000585967 RIMBP3CA6NJZ7 1639 aa30.65■■■□□ 2.5
MBD3-204ENST00000585967 RIMBP3BA6NNM3 1639 aa30.65■■■□□ 2.5
MBD3-204ENST00000585967 RIMBP3Q9UFD9 1639 aa30.65■■■□□ 2.5
MBD3-204ENST00000585967 SOGA1O94964 1423 aa30.64■■■□□ 2.5
MBD3-204ENST00000585967 CUX1P39880 1505 aa30.63■■■□□ 2.49
MBD3-204ENST00000585967 SUPT5HO00267 1087 aaKnown RBP30.62■■■□□ 2.49
MBD3-204ENST00000585967 RAD54L2Q9Y4B4 1467 aa30.61■■■□□ 2.49
MBD3-204ENST00000585967 ARHGEF11O15085 1522 aa30.54■■■□□ 2.48
MBD3-204ENST00000585967 TDRD9Q8NDG6 1382 aaKnown RBP30.49■■■□□ 2.47
MBD3-204ENST00000585967 PBRM1Q86U86 1689 aa30.48■■■□□ 2.47
MBD3-204ENST00000585967 MAGI1Q96QZ7 1491 aaPredicted RBP30.47■■■□□ 2.47
MBD3-204ENST00000585967 FBLN2P98095 1184 aa30.47■■■□□ 2.47
MBD3-204ENST00000585967 SNAPC4Q5SXM2 1469 aa30.45■■■□□ 2.47
MBD3-204ENST00000585967 GRIN2BQ13224 1484 aa30.44■■■□□ 2.46
MBD3-204ENST00000585967 SYNJ1O43426 1573 aa30.4■■■□□ 2.46
MBD3-204ENST00000585967 BIVM-ERCC5R4GMW8 1640 aa30.34■■■□□ 2.45
MBD3-204ENST00000585967 ABCA10Q8WWZ4 1543 aa30.34■■■□□ 2.45
MBD3-204ENST00000585967 ABCA5Q8WWZ7 1642 aa30.33■■■□□ 2.45
MBD3-204ENST00000585967 GAPVD1Q14C86 1478 aa30.33■■■□□ 2.45
MBD3-204ENST00000585967 SYNJ2O15056 1496 aa30.32■■■□□ 2.44
MBD3-204ENST00000585967 CHMP7Q8WUX9 453 aaPredicted RBP30.31■■■□□ 2.44
MBD3-204ENST00000585967 TOP2BQ02880 1626 aa30.29■■■□□ 2.44
MBD3-204ENST00000585967 CLASP1Q7Z460 1538 aa30.28■■■□□ 2.44
MBD3-204ENST00000585967 WRNQ14191 1432 aaPredicted RBP eCLIP30.26■■■□□ 2.43
MBD3-204ENST00000585967 ARAP1Q96P48 1450 aa30.19■■■□□ 2.42
MBD3-204ENST00000585967 CYB5RLQ6IPT4 315 aa30.17■■■□□ 2.42
MBD3-204ENST00000585967 ADAMTS12P58397 1594 aa30.1■■■□□ 2.41
MBD3-204ENST00000585967 GRIN2AQ12879 1464 aa30.04■■■□□ 2.4
MBD3-204ENST00000585967 ERICH3Q5RHP9 1530 aa30.03■■■□□ 2.4
MBD3-204ENST00000585967 FHAD1B1AJZ9 1412 aa29.96■■■□□ 2.39
MBD3-204ENST00000585967 CEP170Q5SW79 1584 aa29.9■■■□□ 2.38
MBD3-204ENST00000585967 NUP160Q12769 1436 aa29.88■■■□□ 2.37
MBD3-204ENST00000585967 TRHP20396 242 aaPredicted RBP29.86■■■□□ 2.37
MBD3-204ENST00000585967 SHROOM2Q13796 1616 aa29.83■■■□□ 2.37
MBD3-204ENST00000585967 CUL7Q14999 1698 aa29.74■■■□□ 2.35
MBD3-204ENST00000585967 ERCC6L2Q5T890 1561 aa29.7■■■□□ 2.35
MBD3-204ENST00000585967 RUSC2Q8N2Y8 1516 aa29.68■■■□□ 2.34
MBD3-204ENST00000585967 KIF27Q86VH2 1401 aa29.68■■■□□ 2.34
MBD3-204ENST00000585967 PRG4Q92954 1404 aaPredicted RBP29.57■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms