RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 NISCHQ9Y2I1 1504 aa30.09■■■□□ 2.41
VMP1-202ENST00000585847 CCDC180Q9P1Z9 1646 aa26.58■■□□□ 1.85
VMP1-202ENST00000585847 ABCC9O60706 1549 aa26.18■■□□□ 1.78
VMP1-202ENST00000585847 ZCCHC6Q5VYS8 1495 aaKnown RBP25.15■■□□□ 1.62
VMP1-202ENST00000585847 DCAF1Q9Y4B6 1507 aa24.91■■□□□ 1.58
VMP1-202ENST00000585847 NACADO15069 1562 aa24.9■■□□□ 1.58
VMP1-202ENST00000585847 DCAF8L2P0C7V8 631 aa24.88■■□□□ 1.57
VMP1-202ENST00000585847 MYO15BQ96JP2 1530 aa24.87■■□□□ 1.57
VMP1-202ENST00000585847 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
VMP1-202ENST00000585847 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
VMP1-202ENST00000585847 UNC13AQ9UPW8 1703 aa24.41■■□□□ 1.5
VMP1-202ENST00000585847 PABPN1Q86U42 306 aaKnown RBP eCLIP24.32■■□□□ 1.48
VMP1-202ENST00000585847 SCRIBQ14160 1630 aa24.29■■□□□ 1.48
VMP1-202ENST00000585847 BICRAQ9NZM4 1560 aa24.19■■□□□ 1.46
VMP1-202ENST00000585847 SHROOM4Q9ULL8 1493 aa23.94■■□□□ 1.42
VMP1-202ENST00000585847 CC2D2AQ9P2K1 1620 aa23.62■■□□□ 1.37
VMP1-202ENST00000585847 CECR2Q9BXF3 1484 aa23.61■■□□□ 1.37
VMP1-202ENST00000585847 EIF4G1Q04637 1599 aaKnown RBP23.52■■□□□ 1.36
VMP1-202ENST00000585847 SMARCA4P51532 1647 aa23.28■■□□□ 1.32
VMP1-202ENST00000585847 BAZ1AQ9NRL2 1556 aaPredicted RBP23.25■■□□□ 1.31
VMP1-202ENST00000585847 MROH2BQ7Z745 1585 aa23.23■■□□□ 1.31
VMP1-202ENST00000585847 ATAD2BQ9ULI0 1458 aa23.07■■□□□ 1.28
VMP1-202ENST00000585847 RSF1Q96T23 1441 aaPredicted RBP23.07■■□□□ 1.28
VMP1-202ENST00000585847 PEG3Q9GZU2 1588 aa23.06■■□□□ 1.28
VMP1-202ENST00000585847 SMARCA2P51531 1590 aa23■■□□□ 1.27
VMP1-202ENST00000585847 WIZO95785 1651 aa23■■□□□ 1.27
VMP1-202ENST00000585847 NCAPD3P42695 1498 aa22.99■■□□□ 1.27
VMP1-202ENST00000585847 HMGXB3Q12766 1538 aa22.9■■□□□ 1.26
VMP1-202ENST00000585847 DNAJC5Q9H3Z4 198 aa22.86■■□□□ 1.25
VMP1-202ENST00000585847 BAZ1BQ9UIG0 1483 aaKnown RBP22.84■■□□□ 1.25
VMP1-202ENST00000585847 TOP2AP11388 1531 aaKnown RBP22.72■■□□□ 1.23
VMP1-202ENST00000585847 ERCC6Q03468 1493 aa22.68■■□□□ 1.22
VMP1-202ENST00000585847 CUX2O14529 1486 aa22.66■■□□□ 1.22
VMP1-202ENST00000585847 SUPT5HO00267 1087 aaKnown RBP22.64■■□□□ 1.21
VMP1-202ENST00000585847 CCDC88BA6NC98 1476 aa22.47■■□□□ 1.19
VMP1-202ENST00000585847 NESP48681 1621 aa22.4■■□□□ 1.18
VMP1-202ENST00000585847 CADPSQ9ULU8 1353 aa22.32■■□□□ 1.16
VMP1-202ENST00000585847 LAMC3Q9Y6N6 1575 aa22.31■■□□□ 1.16
VMP1-202ENST00000585847 CFTRP13569 1480 aa22.28■■□□□ 1.16
VMP1-202ENST00000585847 THOC2Q8NI27 1593 aaKnown RBP22.22■■□□□ 1.15
VMP1-202ENST00000585847 PRDM2Q13029 1718 aa22.16■■□□□ 1.14
VMP1-202ENST00000585847 KIF21AQ7Z4S6 1674 aa22.14■■□□□ 1.14
VMP1-202ENST00000585847 PDS5BQ9NTI5 1447 aa22.13■■□□□ 1.13
VMP1-202ENST00000585847 FANCD2Q9BXW9 1451 aa22.06■■□□□ 1.12
VMP1-202ENST00000585847 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
VMP1-202ENST00000585847 MRC2Q9UBG0 1479 aa21.94■■□□□ 1.1
VMP1-202ENST00000585847 URB2Q14146 1524 aaKnown RBP21.88■■□□□ 1.09
VMP1-202ENST00000585847 WDR62O43379 1518 aa21.87■■□□□ 1.09
VMP1-202ENST00000585847 TRIM41Q8WV44 630 aa21.85■■□□□ 1.09
VMP1-202ENST00000585847 TOPBP1Q92547 1522 aa21.77■■□□□ 1.08
VMP1-202ENST00000585847 ABCC8Q09428 1581 aa21.77■■□□□ 1.08
VMP1-202ENST00000585847 CUX1P39880 1505 aa21.76■■□□□ 1.07
VMP1-202ENST00000585847 DNMBPQ6XZF7 1577 aa21.76■■□□□ 1.07
VMP1-202ENST00000585847 WRNQ14191 1432 aaPredicted RBP eCLIP21.68■■□□□ 1.06
VMP1-202ENST00000585847 SYNJ1O43426 1573 aa21.67■■□□□ 1.06
VMP1-202ENST00000585847 BIVM-ERCC5R4GMW8 1640 aa21.65■■□□□ 1.06
VMP1-202ENST00000585847 TOP2BQ02880 1626 aa21.63■■□□□ 1.05
VMP1-202ENST00000585847 POLA1P09884 1462 aaPredicted RBP21.61■■□□□ 1.05
VMP1-202ENST00000585847 FGD5Q6ZNL6 1462 aa21.6■■□□□ 1.05
VMP1-202ENST00000585847 OSCARQ8IYS5 282 aa21.59■■□□□ 1.05
VMP1-202ENST00000585847 TARBP1Q13395 1621 aaKnown RBP21.55■■□□□ 1.04
VMP1-202ENST00000585847 RAD54L2Q9Y4B4 1467 aa21.53■■□□□ 1.04
VMP1-202ENST00000585847 IFT140Q96RY7 1462 aa21.52■■□□□ 1.03
VMP1-202ENST00000585847 SOGA1O94964 1423 aa21.49■■□□□ 1.03
VMP1-202ENST00000585847 WDR97A6NE52 1622 aa21.47■■□□□ 1.03
VMP1-202ENST00000585847 ZNF608Q9ULD9 1512 aaPredicted RBP21.45■■□□□ 1.02
VMP1-202ENST00000585847 ABCA10Q8WWZ4 1543 aa21.4■■□□□ 1.02
VMP1-202ENST00000585847 CHIC1Q5VXU3 224 aa21.39■■□□□ 1.01
VMP1-202ENST00000585847 EIF4G3O43432 1585 aaKnown RBP21.36■■□□□ 1.01
VMP1-202ENST00000585847 AQRO60306 1485 aaKnown RBP eCLIP21.35■■□□□ 1.01
VMP1-202ENST00000585847 TDRD9Q8NDG6 1382 aaKnown RBP21.35■■□□□ 1.01
VMP1-202ENST00000585847 RIMBP3CA6NJZ7 1639 aa21.33■■□□□ 1.01
VMP1-202ENST00000585847 RIMBP3BA6NNM3 1639 aa21.33■■□□□ 1.01
VMP1-202ENST00000585847 RIMBP3Q9UFD9 1639 aa21.33■■□□□ 1.01
VMP1-202ENST00000585847 ABCA5Q8WWZ7 1642 aa21.32■■□□□ 1
VMP1-202ENST00000585847 GAPVD1Q14C86 1478 aa21.26■□□□□ 0.99
VMP1-202ENST00000585847 ARHGEF11O15085 1522 aa21.24■□□□□ 0.99
VMP1-202ENST00000585847 AEBP2Q6ZN18 517 aaPredicted RBP21.23■□□□□ 0.99
VMP1-202ENST00000585847 PBRM1Q86U86 1689 aa21.23■□□□□ 0.99
VMP1-202ENST00000585847 RUSC2Q8N2Y8 1516 aa21.21■□□□□ 0.99
VMP1-202ENST00000585847 GRIN2BQ13224 1484 aa21.2■□□□□ 0.98
VMP1-202ENST00000585847 KIF27Q86VH2 1401 aa21.17■□□□□ 0.98
VMP1-202ENST00000585847 CHD1O14646 1710 aa21.15■□□□□ 0.98
VMP1-202ENST00000585847 SNAPC4Q5SXM2 1469 aa21.15■□□□□ 0.98
VMP1-202ENST00000585847 ERICH3Q5RHP9 1530 aa21.14■□□□□ 0.97
VMP1-202ENST00000585847 FBLN2P98095 1184 aa21.12■□□□□ 0.97
VMP1-202ENST00000585847 IGF1RP08069 1367 aa21.11■□□□□ 0.97
VMP1-202ENST00000585847 CYB5RLQ6IPT4 315 aa21.11■□□□□ 0.97
VMP1-202ENST00000585847 MAGI1Q96QZ7 1491 aaPredicted RBP21.1■□□□□ 0.97
VMP1-202ENST00000585847 ADAMTS12P58397 1594 aa21.08■□□□□ 0.97
VMP1-202ENST00000585847 SYNJ2O15056 1496 aa21.02■□□□□ 0.96
VMP1-202ENST00000585847 FHAD1B1AJZ9 1412 aa21.02■□□□□ 0.96
VMP1-202ENST00000585847 TRHP20396 242 aaPredicted RBP21.01■□□□□ 0.95
VMP1-202ENST00000585847 CUL7Q14999 1698 aa20.99■□□□□ 0.95
VMP1-202ENST00000585847 ARAP1Q96P48 1450 aa20.99■□□□□ 0.95
VMP1-202ENST00000585847 EEA1Q15075 1411 aa20.97■□□□□ 0.95
VMP1-202ENST00000585847 CARMIL1Q5VZK9 1371 aa20.97■□□□□ 0.95
VMP1-202ENST00000585847 GRIN2AQ12879 1464 aa20.94■□□□□ 0.94
VMP1-202ENST00000585847 CHMP7Q8WUX9 453 aaPredicted RBP20.93■□□□□ 0.94
VMP1-202ENST00000585847 CSRNP3Q8WYN3 585 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms