RNA–Protein interactions for RNA: ENST00000585752.5

ATG4D-203, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 729 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-203ENST00000585752 NISCHQ9Y2I1 1504 aa45.83■■■■■ 4.93
ATG4D-203ENST00000585752 CCDC180Q9P1Z9 1646 aa41.06■■■■■ 4.16
ATG4D-203ENST00000585752 ABCC9O60706 1549 aa40.67■■■■■ 4.1
ATG4D-203ENST00000585752 RB1CC1Q8TDY2 1594 aa38.94■■■■□ 3.82
ATG4D-203ENST00000585752 DCAF8L2P0C7V8 631 aa38.78■■■■□ 3.8
ATG4D-203ENST00000585752 NACADO15069 1562 aa38.71■■■■□ 3.79
ATG4D-203ENST00000585752 MYO15BQ96JP2 1530 aa38.22■■■■□ 3.71
ATG4D-203ENST00000585752 UNC13AQ9UPW8 1703 aa38.05■■■■□ 3.68
ATG4D-203ENST00000585752 ZCCHC6Q5VYS8 1495 aaKnown RBP38.03■■■■□ 3.68
ATG4D-203ENST00000585752 PABPN1Q86U42 306 aaKnown RBP eCLIP37.93■■■■□ 3.66
ATG4D-203ENST00000585752 DCAF1Q9Y4B6 1507 aa37.87■■■■□ 3.65
ATG4D-203ENST00000585752 DNAJC5BQ9UF47 199 aa37.69■■■■□ 3.62
ATG4D-203ENST00000585752 BICRAQ9NZM4 1560 aa37.62■■■■□ 3.61
ATG4D-203ENST00000585752 SCRIBQ14160 1630 aa37.44■■■■□ 3.58
ATG4D-203ENST00000585752 SHROOM4Q9ULL8 1493 aa37.24■■■■□ 3.55
ATG4D-203ENST00000585752 CC2D2AQ9P2K1 1620 aa36.77■■■■□ 3.48
ATG4D-203ENST00000585752 EIF4G1Q04637 1599 aaKnown RBP36.75■■■■□ 3.47
ATG4D-203ENST00000585752 CECR2Q9BXF3 1484 aa36.6■■■■□ 3.45
ATG4D-203ENST00000585752 SMARCA4P51532 1647 aa35.72■■■■□ 3.31
ATG4D-203ENST00000585752 NCAPD3P42695 1498 aa35.66■■■■□ 3.3
ATG4D-203ENST00000585752 BAZ1AQ9NRL2 1556 aaPredicted RBP35.63■■■■□ 3.29
ATG4D-203ENST00000585752 SMARCA2P51531 1590 aa35.62■■■■□ 3.29
ATG4D-203ENST00000585752 ATAD2BQ9ULI0 1458 aa35.6■■■■□ 3.29
ATG4D-203ENST00000585752 HMGXB3Q12766 1538 aa35.47■■■■□ 3.27
ATG4D-203ENST00000585752 BAZ1BQ9UIG0 1483 aaKnown RBP35.38■■■■□ 3.25
ATG4D-203ENST00000585752 MROH2BQ7Z745 1585 aa35.3■■■■□ 3.24
ATG4D-203ENST00000585752 PEG3Q9GZU2 1588 aa35.3■■■■□ 3.24
ATG4D-203ENST00000585752 ERCC6Q03468 1493 aa35.2■■■■□ 3.23
ATG4D-203ENST00000585752 NESP48681 1621 aa34.99■■■■□ 3.19
ATG4D-203ENST00000585752 WIZO95785 1651 aa34.98■■■■□ 3.19
ATG4D-203ENST00000585752 CUX2O14529 1486 aa34.91■■■■□ 3.18
ATG4D-203ENST00000585752 LAMC3Q9Y6N6 1575 aa34.9■■■■□ 3.18
ATG4D-203ENST00000585752 PDS5BQ9NTI5 1447 aa34.71■■■■□ 3.15
ATG4D-203ENST00000585752 RSF1Q96T23 1441 aaPredicted RBP34.69■■■■□ 3.14
ATG4D-203ENST00000585752 KIF21AQ7Z4S6 1674 aa34.66■■■■□ 3.14
ATG4D-203ENST00000585752 CADPSQ9ULU8 1353 aa34.64■■■■□ 3.14
ATG4D-203ENST00000585752 THOC2Q8NI27 1593 aaKnown RBP34.57■■■■□ 3.12
ATG4D-203ENST00000585752 TOP2AP11388 1531 aaKnown RBP34.53■■■■□ 3.12
ATG4D-203ENST00000585752 DNAJC5Q9H3Z4 198 aa34.45■■■■□ 3.11
ATG4D-203ENST00000585752 MRC2Q9UBG0 1479 aa34.33■■■■□ 3.09
ATG4D-203ENST00000585752 CEP164Q9UPV0 1460 aa34.3■■■■□ 3.08
ATG4D-203ENST00000585752 CFTRP13569 1480 aa34.27■■■■□ 3.08
ATG4D-203ENST00000585752 FANCD2Q9BXW9 1451 aa34.26■■■■□ 3.07
ATG4D-203ENST00000585752 WDR62O43379 1518 aa34.2■■■■□ 3.06
ATG4D-203ENST00000585752 PRDM2Q13029 1718 aa34.16■■■■□ 3.06
ATG4D-203ENST00000585752 CCDC88BA6NC98 1476 aa34.12■■■■□ 3.05
ATG4D-203ENST00000585752 URB2Q14146 1524 aaKnown RBP33.89■■■■□ 3.02
ATG4D-203ENST00000585752 ABCC8Q09428 1581 aa33.69■■■□□ 2.98
ATG4D-203ENST00000585752 TOPBP1Q92547 1522 aa33.63■■■□□ 2.97
ATG4D-203ENST00000585752 SUPT5HO00267 1087 aaKnown RBP33.62■■■□□ 2.97
ATG4D-203ENST00000585752 IFT140Q96RY7 1462 aa33.58■■■□□ 2.97
ATG4D-203ENST00000585752 DNMBPQ6XZF7 1577 aa33.58■■■□□ 2.97
ATG4D-203ENST00000585752 OSCARQ8IYS5 282 aa33.47■■■□□ 2.95
ATG4D-203ENST00000585752 ZNF608Q9ULD9 1512 aaPredicted RBP33.41■■■□□ 2.94
ATG4D-203ENST00000585752 EIF4G3O43432 1585 aaKnown RBP33.32■■■□□ 2.92
ATG4D-203ENST00000585752 POLA1P09884 1462 aaPredicted RBP33.29■■■□□ 2.92
ATG4D-203ENST00000585752 TARBP1Q13395 1621 aaKnown RBP33.28■■■□□ 2.92
ATG4D-203ENST00000585752 TRIM41Q8WV44 630 aa33.24■■■□□ 2.91
ATG4D-203ENST00000585752 SOGA1O94964 1423 aa33.22■■■□□ 2.91
ATG4D-203ENST00000585752 AQRO60306 1485 aaKnown RBP eCLIP33.21■■■□□ 2.913e-6■■■■□ 19.5
ATG4D-203ENST00000585752 FGD5Q6ZNL6 1462 aa33.18■■■□□ 2.9
ATG4D-203ENST00000585752 RAD54L2Q9Y4B4 1467 aa33.18■■■□□ 2.9
ATG4D-203ENST00000585752 CUX1P39880 1505 aa33.15■■■□□ 2.9
ATG4D-203ENST00000585752 FBLN2P98095 1184 aa33.09■■■□□ 2.89
ATG4D-203ENST00000585752 CHD1O14646 1710 aa33.08■■■□□ 2.89
ATG4D-203ENST00000585752 TDRD9Q8NDG6 1382 aaKnown RBP33.08■■■□□ 2.89
ATG4D-203ENST00000585752 WDR97A6NE52 1622 aa33.06■■■□□ 2.88
ATG4D-203ENST00000585752 RIMBP3CA6NJZ7 1639 aa32.92■■■□□ 2.86
ATG4D-203ENST00000585752 RIMBP3BA6NNM3 1639 aa32.92■■■□□ 2.86
ATG4D-203ENST00000585752 RIMBP3Q9UFD9 1639 aa32.92■■■□□ 2.86
ATG4D-203ENST00000585752 SNAPC4Q5SXM2 1469 aa32.9■■■□□ 2.86
ATG4D-203ENST00000585752 GRIN2BQ13224 1484 aa32.88■■■□□ 2.85
ATG4D-203ENST00000585752 CHMP7Q8WUX9 453 aaPredicted RBP32.88■■■□□ 2.85
ATG4D-203ENST00000585752 PBRM1Q86U86 1689 aa32.85■■■□□ 2.85
ATG4D-203ENST00000585752 MAGI1Q96QZ7 1491 aaPredicted RBP32.84■■■□□ 2.85
ATG4D-203ENST00000585752 GAPVD1Q14C86 1478 aa32.82■■■□□ 2.84
ATG4D-203ENST00000585752 ARHGEF11O15085 1522 aa32.82■■■□□ 2.84
ATG4D-203ENST00000585752 WRNQ14191 1432 aaPredicted RBP eCLIP32.81■■■□□ 2.84
ATG4D-203ENST00000585752 ABCA10Q8WWZ4 1543 aa32.79■■■□□ 2.84
ATG4D-203ENST00000585752 BIVM-ERCC5R4GMW8 1640 aa32.79■■■□□ 2.84
ATG4D-203ENST00000585752 TOP2BQ02880 1626 aa32.78■■■□□ 2.84
ATG4D-203ENST00000585752 SYNJ1O43426 1573 aa32.73■■■□□ 2.83
ATG4D-203ENST00000585752 SYNJ2O15056 1496 aa32.72■■■□□ 2.83
ATG4D-203ENST00000585752 ABCA5Q8WWZ7 1642 aa32.71■■■□□ 2.83
ATG4D-203ENST00000585752 CYB5RLQ6IPT4 315 aa32.64■■■□□ 2.82
ATG4D-203ENST00000585752 CLASP1Q7Z460 1538 aa32.57■■■□□ 2.8
ATG4D-203ENST00000585752 ARAP1Q96P48 1450 aa32.48■■■□□ 2.79
ATG4D-203ENST00000585752 ADAMTS12P58397 1594 aa32.46■■■□□ 2.79
ATG4D-203ENST00000585752 GRIN2AQ12879 1464 aa32.43■■■□□ 2.78
ATG4D-203ENST00000585752 ERICH3Q5RHP9 1530 aa32.43■■■□□ 2.78
ATG4D-203ENST00000585752 FHAD1B1AJZ9 1412 aa32.41■■■□□ 2.78
ATG4D-203ENST00000585752 TRHP20396 242 aaPredicted RBP32.28■■■□□ 2.76
ATG4D-203ENST00000585752 CEP170Q5SW79 1584 aa32.28■■■□□ 2.76
ATG4D-203ENST00000585752 NUP160Q12769 1436 aa32.26■■■□□ 2.75
ATG4D-203ENST00000585752 KIF27Q86VH2 1401 aa32.21■■■□□ 2.75
ATG4D-203ENST00000585752 CUL7Q14999 1698 aa32.1■■■□□ 2.73
ATG4D-203ENST00000585752 SHROOM2Q13796 1616 aa32.1■■■□□ 2.73
ATG4D-203ENST00000585752 ERCC6L2Q5T890 1561 aa32.07■■■□□ 2.72
ATG4D-203ENST00000585752 JPH4Q96JJ6 628 aa32.04■■■□□ 2.72
ATG4D-203ENST00000585752 IGF1RP08069 1367 aa32.04■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms