RNA–Protein interactions for RNA: ENST00000585460.1

PRKAR1A-206, Transcript of protein kinase cAMP-dependent type I regulatory subunit alpha, human

TSL 2

Gene PRKAR1A, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKAR1A-206	ENST00000585460	NISCH	Q9Y2I1	1504 aa		40.92	■■■■■ 4.14
PRKAR1A-206	ENST00000585460	ABCC9	O60706	1549 aa		36.77	■■■■□ 3.48
PRKAR1A-206	ENST00000585460	CCDC180	Q9P1Z9	1646 aa		36.51	■■■■□ 3.43
PRKAR1A-206	ENST00000585460	RB1CC1	Q8TDY2	1594 aa		34.87	■■■■□ 3.17
PRKAR1A-206	ENST00000585460	DCAF8L2	P0C7V8	631 aa		34.75	■■■■□ 3.15
PRKAR1A-206	ENST00000585460	DNAJC5B	Q9UF47	199 aa		34.71	■■■■□ 3.15
PRKAR1A-206	ENST00000585460	NACAD	O15069	1562 aa		34.66	■■■■□ 3.14
PRKAR1A-206	ENST00000585460	PABPN1	Q86U42	306 aa	Known RBP eCLIP	34.38	■■■■□ 3.09
PRKAR1A-206	ENST00000585460	MYO15B	Q96JP2	1530 aa		34.2	■■■■□ 3.07
PRKAR1A-206	ENST00000585460	UNC13A	Q9UPW8	1703 aa		33.92	■■■■□ 3.02
PRKAR1A-206	ENST00000585460	BICRA	Q9NZM4	1560 aa		33.9	■■■■□ 3.02
PRKAR1A-206	ENST00000585460	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.86	■■■■□ 3.01
PRKAR1A-206	ENST00000585460	DCAF1	Q9Y4B6	1507 aa		33.75	■■■□□ 2.99
PRKAR1A-206	ENST00000585460	SHROOM4	Q9ULL8	1493 aa		33.38	■■■□□ 2.93
PRKAR1A-206	ENST00000585460	SCRIB	Q14160	1630 aa		33.37	■■■□□ 2.93
PRKAR1A-206	ENST00000585460	CECR2	Q9BXF3	1484 aa		33.12	■■■□□ 2.89
PRKAR1A-206	ENST00000585460	CC2D2A	Q9P2K1	1620 aa		33.12	■■■□□ 2.89
PRKAR1A-206	ENST00000585460	EIF4G1	Q04637	1599 aa	Known RBP	33.05	■■■□□ 2.88
PRKAR1A-206	ENST00000585460	NCAPD3	P42695	1498 aa		32.11	■■■□□ 2.73
PRKAR1A-206	ENST00000585460	ATAD2B	Q9ULI0	1458 aa		31.99	■■■□□ 2.71
PRKAR1A-206	ENST00000585460	DNAJC5	Q9H3Z4	198 aa		31.85	■■■□□ 2.69
PRKAR1A-206	ENST00000585460	SMARCA4	P51532	1647 aa		31.82	■■■□□ 2.69
PRKAR1A-206	ENST00000585460	SMARCA2	P51531	1590 aa		31.81	■■■□□ 2.68
PRKAR1A-206	ENST00000585460	HMGXB3	Q12766	1538 aa		31.73	■■■□□ 2.67
PRKAR1A-206	ENST00000585460	ERCC6	Q03468	1493 aa		31.71	■■■□□ 2.67
PRKAR1A-206	ENST00000585460	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	31.7	■■■□□ 2.67
PRKAR1A-206	ENST00000585460	CUX2	O14529	1486 aa		31.64	■■■□□ 2.66
PRKAR1A-206	ENST00000585460	BAZ1B	Q9UIG0	1483 aa	Known RBP	31.62	■■■□□ 2.65
PRKAR1A-206	ENST00000585460	NES	P48681	1621 aa		31.59	■■■□□ 2.65
PRKAR1A-206	ENST00000585460	MROH2B	Q7Z745	1585 aa		31.55	■■■□□ 2.64
PRKAR1A-206	ENST00000585460	PEG3	Q9GZU2	1588 aa		31.53	■■■□□ 2.64
PRKAR1A-206	ENST00000585460	LAMC3	Q9Y6N6	1575 aa		31.25	■■■□□ 2.59
PRKAR1A-206	ENST00000585460	PDS5B	Q9NTI5	1447 aa		31.19	■■■□□ 2.58
PRKAR1A-206	ENST00000585460	CADPS	Q9ULU8	1353 aa		31.17	■■■□□ 2.58
PRKAR1A-206	ENST00000585460	THOC2	Q8NI27	1593 aa	Known RBP	31.11	■■■□□ 2.57
PRKAR1A-206	ENST00000585460	WIZ	O95785	1651 aa		31.08	■■■□□ 2.57
PRKAR1A-206	ENST00000585460	KIF21A	Q7Z4S6	1674 aa		30.97	■■■□□ 2.55
PRKAR1A-206	ENST00000585460	RSF1	Q96T23	1441 aa	Predicted RBP	30.95	■■■□□ 2.54
PRKAR1A-206	ENST00000585460	MRC2	Q9UBG0	1479 aa		30.87	■■■□□ 2.53
PRKAR1A-206	ENST00000585460	CFTR	P13569	1480 aa		30.76	■■■□□ 2.51
PRKAR1A-206	ENST00000585460	WDR62	O43379	1518 aa		30.74	■■■□□ 2.51
PRKAR1A-206	ENST00000585460	FANCD2	Q9BXW9	1451 aa		30.74	■■■□□ 2.51
PRKAR1A-206	ENST00000585460	CEP164	Q9UPV0	1460 aa		30.72	■■■□□ 2.51
PRKAR1A-206	ENST00000585460	TOP2A	P11388	1531 aa	Known RBP	30.68	■■■□□ 2.5
PRKAR1A-206	ENST00000585460	URB2	Q14146	1524 aa	Known RBP	30.48	■■■□□ 2.47
PRKAR1A-206	ENST00000585460	CCDC88B	A6NC98	1476 aa		30.47	■■■□□ 2.47
PRKAR1A-206	ENST00000585460	TRIM41	Q8WV44	630 aa		30.41	■■■□□ 2.46
PRKAR1A-206	ENST00000585460	OSCAR	Q8IYS5	282 aa		30.38	■■■□□ 2.45
PRKAR1A-206	ENST00000585460	IFT140	Q96RY7	1462 aa		30.15	■■■□□ 2.42
PRKAR1A-206	ENST00000585460	TOPBP1	Q92547	1522 aa		30.14	■■■□□ 2.42
PRKAR1A-206	ENST00000585460	ZNF608	Q9ULD9	1512 aa	Predicted RBP	30.14	■■■□□ 2.42
PRKAR1A-206	ENST00000585460	PRDM2	Q13029	1718 aa		30.1	■■■□□ 2.41
PRKAR1A-206	ENST00000585460	ABCC8	Q09428	1581 aa		30.07	■■■□□ 2.4
PRKAR1A-206	ENST00000585460	DNMBP	Q6XZF7	1577 aa		29.96	■■■□□ 2.39
PRKAR1A-206	ENST00000585460	AQR	O60306	1485 aa	Known RBP eCLIP	29.91	■■■□□ 2.38	2e-11	■■■■■ 45
PRKAR1A-206	ENST00000585460	POLA1	P09884	1462 aa	Predicted RBP	29.83	■■■□□ 2.37
PRKAR1A-206	ENST00000585460	TARBP1	Q13395	1621 aa	Known RBP	29.81	■■■□□ 2.36
PRKAR1A-206	ENST00000585460	EIF4G3	O43432	1585 aa	Known RBP	29.81	■■■□□ 2.36
PRKAR1A-206	ENST00000585460	RAD54L2	Q9Y4B4	1467 aa		29.79	■■■□□ 2.36
PRKAR1A-206	ENST00000585460	SOGA1	O94964	1423 aa		29.79	■■■□□ 2.36
PRKAR1A-206	ENST00000585460	FBLN2	P98095	1184 aa		29.78	■■■□□ 2.36
PRKAR1A-206	ENST00000585460	TDRD9	Q8NDG6	1382 aa	Known RBP	29.77	■■■□□ 2.36
PRKAR1A-206	ENST00000585460	RIMBP3C	A6NJZ7	1639 aa		29.74	■■■□□ 2.35
PRKAR1A-206	ENST00000585460	RIMBP3B	A6NNM3	1639 aa		29.74	■■■□□ 2.35
PRKAR1A-206	ENST00000585460	RIMBP3	Q9UFD9	1639 aa		29.74	■■■□□ 2.35
PRKAR1A-206	ENST00000585460	ARHGEF11	O15085	1522 aa		29.71	■■■□□ 2.35
PRKAR1A-206	ENST00000585460	CYB5RL	Q6IPT4	315 aa		29.68	■■■□□ 2.34
PRKAR1A-206	ENST00000585460	SUPT5H	O00267	1087 aa	Known RBP	29.67	■■■□□ 2.34
PRKAR1A-206	ENST00000585460	FGD5	Q6ZNL6	1462 aa		29.64	■■■□□ 2.34
PRKAR1A-206	ENST00000585460	CUX1	P39880	1505 aa		29.61	■■■□□ 2.33
PRKAR1A-206	ENST00000585460	CHMP7	Q8WUX9	453 aa	Predicted RBP	29.55	■■■□□ 2.32
PRKAR1A-206	ENST00000585460	CHD1	O14646	1710 aa		29.54	■■■□□ 2.32
PRKAR1A-206	ENST00000585460	SNAPC4	Q5SXM2	1469 aa		29.51	■■■□□ 2.31
PRKAR1A-206	ENST00000585460	GRIN2B	Q13224	1484 aa		29.46	■■■□□ 2.31
PRKAR1A-206	ENST00000585460	ARAP1	Q96P48	1450 aa		29.44	■■■□□ 2.3
PRKAR1A-206	ENST00000585460	WDR97	A6NE52	1622 aa		29.43	■■■□□ 2.3
PRKAR1A-206	ENST00000585460	MAGI1	Q96QZ7	1491 aa	Predicted RBP	29.42	■■■□□ 2.3
PRKAR1A-206	ENST00000585460	GAPVD1	Q14C86	1478 aa		29.36	■■■□□ 2.29
PRKAR1A-206	ENST00000585460	SYNJ2	O15056	1496 aa		29.35	■■■□□ 2.29
PRKAR1A-206	ENST00000585460	TRH	P20396	242 aa	Predicted RBP	29.32	■■■□□ 2.28
PRKAR1A-206	ENST00000585460	CLASP1	Q7Z460	1538 aa		29.31	■■■□□ 2.28
PRKAR1A-206	ENST00000585460	ABCA10	Q8WWZ4	1543 aa		29.31	■■■□□ 2.28
PRKAR1A-206	ENST00000585460	SYNJ1	O43426	1573 aa		29.26	■■■□□ 2.28
PRKAR1A-206	ENST00000585460	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.24	■■■□□ 2.27
PRKAR1A-206	ENST00000585460	ABCA5	Q8WWZ7	1642 aa		29.16	■■■□□ 2.26
PRKAR1A-206	ENST00000585460	PBRM1	Q86U86	1689 aa		29.12	■■■□□ 2.25
PRKAR1A-206	ENST00000585460	TOP2B	Q02880	1626 aa		29.06	■■■□□ 2.24
PRKAR1A-206	ENST00000585460	GRIN2A	Q12879	1464 aa		29.05	■■■□□ 2.24
PRKAR1A-206	ENST00000585460	FHAD1	B1AJZ9	1412 aa		29.01	■■■□□ 2.23
PRKAR1A-206	ENST00000585460	BIVM-ERCC5	R4GMW8	1640 aa		29.01	■■■□□ 2.23
PRKAR1A-206	ENST00000585460	NUP160	Q12769	1436 aa		28.99	■■■□□ 2.23
PRKAR1A-206	ENST00000585460	ADAMTS12	P58397	1594 aa		28.94	■■■□□ 2.22
PRKAR1A-206	ENST00000585460	ERCC6L2	Q5T890	1561 aa		28.92	■■■□□ 2.22
PRKAR1A-206	ENST00000585460	CEP170	Q5SW79	1584 aa		28.91	■■■□□ 2.22
PRKAR1A-206	ENST00000585460	ERICH3	Q5RHP9	1530 aa		28.89	■■■□□ 2.22
PRKAR1A-206	ENST00000585460	JPH4	Q96JJ6	628 aa		28.84	■■■□□ 2.21
PRKAR1A-206	ENST00000585460	PRG4	Q92954	1404 aa	Predicted RBP	28.76	■■■□□ 2.19
PRKAR1A-206	ENST00000585460	SHROOM2	Q13796	1616 aa		28.74	■■■□□ 2.19
PRKAR1A-206	ENST00000585460	IGF1R	P08069	1367 aa		28.72	■■■□□ 2.19
PRKAR1A-206	ENST00000585460	KIF27	Q86VH2	1401 aa		28.61	■■■□□ 2.17

Retrieved 100 of 20,778 RNA–protein pairs in 127.1 ms