RNA–Protein interactions for RNA: ENST00000585395.6

LSM7-202, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM7, Length 621 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM7-202ENST00000585395 NISCHQ9Y2I1 1504 aa55.84■■■■■ 6.53
LSM7-202ENST00000585395 ABCC9O60706 1549 aa50.75■■■■■ 5.71
LSM7-202ENST00000585395 CCDC180Q9P1Z9 1646 aa50.06■■■■■ 5.6
LSM7-202ENST00000585395 DNAJC5BQ9UF47 199 aa48.31■■■■■ 5.32
LSM7-202ENST00000585395 RB1CC1Q8TDY2 1594 aa48.03■■■■■ 5.28
LSM7-202ENST00000585395 NACADO15069 1562 aa47.53■■■■■ 5.2
LSM7-202ENST00000585395 PABPN1Q86U42 306 aaKnown RBP eCLIP47.11■■■■■ 5.13
LSM7-202ENST00000585395 DCAF8L2P0C7V8 631 aa47.01■■■■■ 5.12
LSM7-202ENST00000585395 UNC13AQ9UPW8 1703 aa46.88■■■■■ 5.09
LSM7-202ENST00000585395 MYO15BQ96JP2 1530 aa46.65■■■■■ 5.06
LSM7-202ENST00000585395 BICRAQ9NZM4 1560 aa46.62■■■■■ 5.05
LSM7-202ENST00000585395 ZCCHC6Q5VYS8 1495 aaKnown RBP46.45■■■■■ 5.03
LSM7-202ENST00000585395 DCAF1Q9Y4B6 1507 aa46.13■■■■■ 4.98
LSM7-202ENST00000585395 SHROOM4Q9ULL8 1493 aa46.03■■■■■ 4.96
LSM7-202ENST00000585395 CECR2Q9BXF3 1484 aa45.85■■■■■ 4.93
LSM7-202ENST00000585395 CC2D2AQ9P2K1 1620 aa45.84■■■■■ 4.93
LSM7-202ENST00000585395 EIF4G1Q04637 1599 aaKnown RBP45.56■■■■■ 4.88
LSM7-202ENST00000585395 SCRIBQ14160 1630 aa45.5■■■■■ 4.87
LSM7-202ENST00000585395 DNAJC5Q9H3Z4 198 aa45.04■■■■■ 4.8
LSM7-202ENST00000585395 CUX2O14529 1486 aa44.16■■■■■ 4.66
LSM7-202ENST00000585395 ERCC6Q03468 1493 aa43.92■■■■■ 4.62
LSM7-202ENST00000585395 NCAPD3P42695 1498 aa43.89■■■■■ 4.62
LSM7-202ENST00000585395 ATAD2BQ9ULI0 1458 aa43.59■■■■■ 4.57
LSM7-202ENST00000585395 HMGXB3Q12766 1538 aa43.48■■■■■ 4.55
LSM7-202ENST00000585395 SMARCA2P51531 1590 aa43.47■■■■■ 4.55
LSM7-202ENST00000585395 SMARCA4P51532 1647 aa43.44■■■■■ 4.54
LSM7-202ENST00000585395 BAZ1AQ9NRL2 1556 aaPredicted RBP43.36■■■■■ 4.53
LSM7-202ENST00000585395 NESP48681 1621 aa43.36■■■■■ 4.53
LSM7-202ENST00000585395 BAZ1BQ9UIG0 1483 aaKnown RBP43.13■■■■■ 4.5
LSM7-202ENST00000585395 THOC2Q8NI27 1593 aaKnown RBP43.12■■■■■ 4.49
LSM7-202ENST00000585395 MROH2BQ7Z745 1585 aa43.03■■■■■ 4.48
LSM7-202ENST00000585395 LAMC3Q9Y6N6 1575 aa43.02■■■■■ 4.48
LSM7-202ENST00000585395 PEG3Q9GZU2 1588 aa42.98■■■■■ 4.47
LSM7-202ENST00000585395 PDS5BQ9NTI5 1447 aa42.8■■■■■ 4.44
LSM7-202ENST00000585395 KIF21AQ7Z4S6 1674 aa42.79■■■■■ 4.44
LSM7-202ENST00000585395 TRIM41Q8WV44 630 aa42.65■■■■■ 4.42
LSM7-202ENST00000585395 WIZO95785 1651 aa42.61■■■■■ 4.41
LSM7-202ENST00000585395 CADPSQ9ULU8 1353 aa42.5■■■■■ 4.39
LSM7-202ENST00000585395 MRC2Q9UBG0 1479 aa42.46■■■■■ 4.39
LSM7-202ENST00000585395 RSF1Q96T23 1441 aaPredicted RBP42.42■■■■■ 4.38
LSM7-202ENST00000585395 WDR62O43379 1518 aa42.38■■■■■ 4.37
LSM7-202ENST00000585395 TOP2AP11388 1531 aaKnown RBP42.14■■■■■ 4.34
LSM7-202ENST00000585395 CEP164Q9UPV0 1460 aa42.12■■■■■ 4.33
LSM7-202ENST00000585395 OSCARQ8IYS5 282 aa42.01■■■■■ 4.32
LSM7-202ENST00000585395 FANCD2Q9BXW9 1451 aa41.99■■■■■ 4.31
LSM7-202ENST00000585395 CFTRP13569 1480 aa41.85■■■■■ 4.29
LSM7-202ENST00000585395 URB2Q14146 1524 aaKnown RBP41.68■■■■■ 4.26
LSM7-202ENST00000585395 CCDC88BA6NC98 1476 aa41.6■■■■■ 4.25
LSM7-202ENST00000585395 RIMBP3CA6NJZ7 1639 aa41.49■■■■■ 4.23
LSM7-202ENST00000585395 RIMBP3BA6NNM3 1639 aa41.49■■■■■ 4.23
LSM7-202ENST00000585395 RIMBP3Q9UFD9 1639 aa41.49■■■■■ 4.23
LSM7-202ENST00000585395 PRDM2Q13029 1718 aa41.44■■■■■ 4.22
LSM7-202ENST00000585395 SUPT5HO00267 1087 aaKnown RBP41.34■■■■■ 4.21
LSM7-202ENST00000585395 IFT140Q96RY7 1462 aa41.34■■■■■ 4.21
LSM7-202ENST00000585395 ARHGEF11O15085 1522 aa41.29■■■■■ 4.2
LSM7-202ENST00000585395 ZNF608Q9ULD9 1512 aaPredicted RBP41.28■■■■■ 4.2
LSM7-202ENST00000585395 TOPBP1Q92547 1522 aa41.1■■■■■ 4.17
LSM7-202ENST00000585395 ABCC8Q09428 1581 aa41.04■■■■■ 4.16
LSM7-202ENST00000585395 EIF4G3O43432 1585 aaKnown RBP41.03■■■■■ 4.16
LSM7-202ENST00000585395 CYB5RLQ6IPT4 315 aa41.03■■■■■ 4.16
LSM7-202ENST00000585395 DNMBPQ6XZF7 1577 aa40.9■■■■■ 4.14
LSM7-202ENST00000585395 CHD1O14646 1710 aa40.87■■■■■ 4.13
LSM7-202ENST00000585395 TRHP20396 242 aaPredicted RBP40.84■■■■■ 4.13
LSM7-202ENST00000585395 ARAP1Q96P48 1450 aa40.82■■■■■ 4.12
LSM7-202ENST00000585395 AQRO60306 1485 aaKnown RBP eCLIP40.81■■■■■ 4.123e-7■■■■□ 21.6
LSM7-202ENST00000585395 TARBP1Q13395 1621 aaKnown RBP40.8■■■■■ 4.12
LSM7-202ENST00000585395 FBLN2P98095 1184 aa40.71■■■■■ 4.11
LSM7-202ENST00000585395 POLA1P09884 1462 aaPredicted RBP40.63■■■■■ 4.09
LSM7-202ENST00000585395 RAD54L2Q9Y4B4 1467 aa40.46■■■■■ 4.07
LSM7-202ENST00000585395 SOGA1O94964 1423 aa40.44■■■■■ 4.06
LSM7-202ENST00000585395 TDRD9Q8NDG6 1382 aaKnown RBP40.44■■■■■ 4.06
LSM7-202ENST00000585395 WDR97A6NE52 1622 aa40.41■■■■■ 4.06
LSM7-202ENST00000585395 CLASP1Q7Z460 1538 aa40.41■■■■■ 4.06
LSM7-202ENST00000585395 CUX1P39880 1505 aa40.4■■■■■ 4.06
LSM7-202ENST00000585395 SNAPC4Q5SXM2 1469 aa40.39■■■■■ 4.06
LSM7-202ENST00000585395 FGD5Q6ZNL6 1462 aa40.35■■■■■ 4.05
LSM7-202ENST00000585395 SYNJ1O43426 1573 aa40.34■■■■■ 4.05
LSM7-202ENST00000585395 CHMP7Q8WUX9 453 aaPredicted RBP40.32■■■■■ 4.05
LSM7-202ENST00000585395 MAGI1Q96QZ7 1491 aaPredicted RBP40.31■■■■■ 4.04
LSM7-202ENST00000585395 AEBP2Q6ZN18 517 aaPredicted RBP40.26■■■■■ 4.04
LSM7-202ENST00000585395 GRIN2BQ13224 1484 aa40.2■■■■■ 4.03
LSM7-202ENST00000585395 SYNJ2O15056 1496 aa40.17■■■■■ 4.02
LSM7-202ENST00000585395 WRNQ14191 1432 aaPredicted RBP eCLIP40.09■■■■■ 4.01
LSM7-202ENST00000585395 GAPVD1Q14C86 1478 aa40.03■■■■■ 4
LSM7-202ENST00000585395 TOP2BQ02880 1626 aa40.01■■■■■ 4
LSM7-202ENST00000585395 BIVM-ERCC5R4GMW8 1640 aa40.01■■■■■ 4
LSM7-202ENST00000585395 PBRM1Q86U86 1689 aa39.94■■■■□ 3.98
LSM7-202ENST00000585395 ABCA10Q8WWZ4 1543 aa39.9■■■■□ 3.98
LSM7-202ENST00000585395 ABCA5Q8WWZ7 1642 aa39.78■■■■□ 3.96
LSM7-202ENST00000585395 GRIN2AQ12879 1464 aa39.68■■■■□ 3.94
LSM7-202ENST00000585395 ERCC6L2Q5T890 1561 aa39.66■■■■□ 3.94
LSM7-202ENST00000585395 CEP170Q5SW79 1584 aa39.59■■■■□ 3.93
LSM7-202ENST00000585395 NUP160Q12769 1436 aa39.58■■■■□ 3.93
LSM7-202ENST00000585395 ADAMTS12P58397 1594 aa39.53■■■■□ 3.92
LSM7-202ENST00000585395 SHROOM2Q13796 1616 aa39.49■■■■□ 3.91
LSM7-202ENST00000585395 ERICH3Q5RHP9 1530 aa39.45■■■■□ 3.91
LSM7-202ENST00000585395 FHAD1B1AJZ9 1412 aa39.42■■■■□ 3.9
LSM7-202ENST00000585395 KIF13AQ9H1H9 1805 aa39.37■■■■□ 3.89
LSM7-202ENST00000585395 KIF27Q86VH2 1401 aa39.3■■■■□ 3.88
LSM7-202ENST00000585395 PRG4Q92954 1404 aaPredicted RBP39.24■■■■□ 3.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms