RNA–Protein interactions for RNA: ENST00000585325.5

PRKCSH-201, Transcript of protein kinase C substrate 80K-H, humanhuman

TSL 4

Gene PRKCSH, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-201ENST00000585325 NISCHQ9Y2I1 1504 aa33.22■■■□□ 2.91
PRKCSH-201ENST00000585325 ABCC9O60706 1549 aa30.04■■■□□ 2.4
PRKCSH-201ENST00000585325 CCDC180Q9P1Z9 1646 aa29.75■■■□□ 2.35
PRKCSH-201ENST00000585325 DNAJC5BQ9UF47 199 aa28.68■■■□□ 2.18
PRKCSH-201ENST00000585325 RB1CC1Q8TDY2 1594 aa28.31■■■□□ 2.12
PRKCSH-201ENST00000585325 NACADO15069 1562 aa28.07■■■□□ 2.08
PRKCSH-201ENST00000585325 DCAF8L2P0C7V8 631 aa28.01■■■□□ 2.07
PRKCSH-201ENST00000585325 PABPN1Q86U42 306 aaKnown RBP eCLIP27.87■■■□□ 2.05
PRKCSH-201ENST00000585325 MYO15BQ96JP2 1530 aa27.72■■■□□ 2.03
PRKCSH-201ENST00000585325 UNC13AQ9UPW8 1703 aa27.64■■■□□ 2.02
PRKCSH-201ENST00000585325 ZCCHC6Q5VYS8 1495 aaKnown RBP27.57■■■□□ 2
PRKCSH-201ENST00000585325 BICRAQ9NZM4 1560 aa27.52■■■□□ 2
PRKCSH-201ENST00000585325 DCAF1Q9Y4B6 1507 aa27.44■■□□□ 1.98
PRKCSH-201ENST00000585325 SCRIBQ14160 1630 aa27.16■■□□□ 1.94
PRKCSH-201ENST00000585325 CECR2Q9BXF3 1484 aa27.11■■□□□ 1.93
PRKCSH-201ENST00000585325 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
PRKCSH-201ENST00000585325 SHROOM4Q9ULL8 1493 aa27.07■■□□□ 1.92
PRKCSH-201ENST00000585325 EIF4G1Q04637 1599 aaKnown RBP26.88■■□□□ 1.89
PRKCSH-201ENST00000585325 DNAJC5Q9H3Z4 198 aa26.74■■□□□ 1.87
PRKCSH-201ENST00000585325 CUX2O14529 1486 aa26.11■■□□□ 1.77
PRKCSH-201ENST00000585325 ERCC6Q03468 1493 aa25.97■■□□□ 1.75
PRKCSH-201ENST00000585325 SMARCA4P51532 1647 aa25.9■■□□□ 1.74
PRKCSH-201ENST00000585325 NCAPD3P42695 1498 aa25.89■■□□□ 1.73
PRKCSH-201ENST00000585325 ATAD2BQ9ULI0 1458 aa25.85■■□□□ 1.73
PRKCSH-201ENST00000585325 SMARCA2P51531 1590 aa25.81■■□□□ 1.72
PRKCSH-201ENST00000585325 BAZ1AQ9NRL2 1556 aaPredicted RBP25.79■■□□□ 1.72
PRKCSH-201ENST00000585325 HMGXB3Q12766 1538 aa25.74■■□□□ 1.71
PRKCSH-201ENST00000585325 NESP48681 1621 aa25.64■■□□□ 1.7
PRKCSH-201ENST00000585325 BAZ1BQ9UIG0 1483 aaKnown RBP25.64■■□□□ 1.69
PRKCSH-201ENST00000585325 PEG3Q9GZU2 1588 aa25.61■■□□□ 1.69
PRKCSH-201ENST00000585325 MROH2BQ7Z745 1585 aa25.61■■□□□ 1.69
PRKCSH-201ENST00000585325 THOC2Q8NI27 1593 aaKnown RBP25.48■■□□□ 1.67
PRKCSH-201ENST00000585325 TRIM41Q8WV44 630 aa25.35■■□□□ 1.65
PRKCSH-201ENST00000585325 WIZO95785 1651 aa25.34■■□□□ 1.65
PRKCSH-201ENST00000585325 LAMC3Q9Y6N6 1575 aa25.34■■□□□ 1.65
PRKCSH-201ENST00000585325 KIF21AQ7Z4S6 1674 aa25.26■■□□□ 1.63
PRKCSH-201ENST00000585325 PDS5BQ9NTI5 1447 aa25.22■■□□□ 1.63
PRKCSH-201ENST00000585325 RSF1Q96T23 1441 aaPredicted RBP25.13■■□□□ 1.61
PRKCSH-201ENST00000585325 CADPSQ9ULU8 1353 aa25.12■■□□□ 1.61
PRKCSH-201ENST00000585325 MRC2Q9UBG0 1479 aa25.05■■□□□ 1.6
PRKCSH-201ENST00000585325 TOP2AP11388 1531 aaKnown RBP25.02■■□□□ 1.6
PRKCSH-201ENST00000585325 WDR62O43379 1518 aa25■■□□□ 1.59
PRKCSH-201ENST00000585325 CEP164Q9UPV0 1460 aa24.88■■□□□ 1.57
PRKCSH-201ENST00000585325 CFTRP13569 1480 aa24.87■■□□□ 1.57
PRKCSH-201ENST00000585325 FANCD2Q9BXW9 1451 aa24.86■■□□□ 1.57
PRKCSH-201ENST00000585325 OSCARQ8IYS5 282 aa24.81■■□□□ 1.56
PRKCSH-201ENST00000585325 CCDC88BA6NC98 1476 aa24.71■■□□□ 1.55
PRKCSH-201ENST00000585325 PRDM2Q13029 1718 aa24.69■■□□□ 1.54
PRKCSH-201ENST00000585325 URB2Q14146 1524 aaKnown RBP24.64■■□□□ 1.53
PRKCSH-201ENST00000585325 RIMBP3CA6NJZ7 1639 aa24.56■■□□□ 1.52
PRKCSH-201ENST00000585325 RIMBP3BA6NNM3 1639 aa24.56■■□□□ 1.52
PRKCSH-201ENST00000585325 RIMBP3Q9UFD9 1639 aa24.56■■□□□ 1.52
PRKCSH-201ENST00000585325 ARHGEF11O15085 1522 aa24.44■■□□□ 1.5
PRKCSH-201ENST00000585325 TOPBP1Q92547 1522 aa24.4■■□□□ 1.5
PRKCSH-201ENST00000585325 ZNF608Q9ULD9 1512 aaPredicted RBP24.39■■□□□ 1.49
PRKCSH-201ENST00000585325 IFT140Q96RY7 1462 aa24.36■■□□□ 1.49
PRKCSH-201ENST00000585325 ABCC8Q09428 1581 aa24.36■■□□□ 1.49
PRKCSH-201ENST00000585325 DNMBPQ6XZF7 1577 aa24.34■■□□□ 1.49
PRKCSH-201ENST00000585325 CYB5RLQ6IPT4 315 aa24.28■■□□□ 1.48
PRKCSH-201ENST00000585325 EIF4G3O43432 1585 aaKnown RBP24.21■■□□□ 1.47
PRKCSH-201ENST00000585325 SUPT5HO00267 1087 aaKnown RBP24.2■■□□□ 1.46
PRKCSH-201ENST00000585325 TRHP20396 242 aaPredicted RBP24.2■■□□□ 1.46
PRKCSH-201ENST00000585325 POLA1P09884 1462 aaPredicted RBP24.17■■□□□ 1.46
PRKCSH-201ENST00000585325 ARAP1Q96P48 1450 aa24.17■■□□□ 1.46
PRKCSH-201ENST00000585325 TARBP1Q13395 1621 aaKnown RBP24.17■■□□□ 1.46
PRKCSH-201ENST00000585325 CHD1O14646 1710 aa24.13■■□□□ 1.45
PRKCSH-201ENST00000585325 AQRO60306 1485 aaKnown RBP eCLIP24.11■■□□□ 1.453e-9■■□□□ 12.8
PRKCSH-201ENST00000585325 RAD54L2Q9Y4B4 1467 aa24.08■■□□□ 1.45
PRKCSH-201ENST00000585325 SOGA1O94964 1423 aa24.06■■□□□ 1.44
PRKCSH-201ENST00000585325 FGD5Q6ZNL6 1462 aa24.06■■□□□ 1.44
PRKCSH-201ENST00000585325 CUX1P39880 1505 aa24.05■■□□□ 1.44
PRKCSH-201ENST00000585325 FBLN2P98095 1184 aa24.04■■□□□ 1.44
PRKCSH-201ENST00000585325 TDRD9Q8NDG6 1382 aaKnown RBP23.99■■□□□ 1.43
PRKCSH-201ENST00000585325 WDR97A6NE52 1622 aa23.95■■□□□ 1.42
PRKCSH-201ENST00000585325 AEBP2Q6ZN18 517 aaPredicted RBP23.91■■□□□ 1.42
PRKCSH-201ENST00000585325 SNAPC4Q5SXM2 1469 aa23.88■■□□□ 1.41
PRKCSH-201ENST00000585325 CLASP1Q7Z460 1538 aa23.85■■□□□ 1.41
PRKCSH-201ENST00000585325 GRIN2BQ13224 1484 aa23.83■■□□□ 1.41
PRKCSH-201ENST00000585325 MAGI1Q96QZ7 1491 aaPredicted RBP23.81■■□□□ 1.4
PRKCSH-201ENST00000585325 PBRM1Q86U86 1689 aa23.79■■□□□ 1.4
PRKCSH-201ENST00000585325 SYNJ1O43426 1573 aa23.78■■□□□ 1.4
PRKCSH-201ENST00000585325 CHMP7Q8WUX9 453 aaPredicted RBP23.78■■□□□ 1.4
PRKCSH-201ENST00000585325 GAPVD1Q14C86 1478 aa23.78■■□□□ 1.4
PRKCSH-201ENST00000585325 ABCA10Q8WWZ4 1543 aa23.77■■□□□ 1.4
PRKCSH-201ENST00000585325 ABCA5Q8WWZ7 1642 aa23.74■■□□□ 1.39
PRKCSH-201ENST00000585325 SYNJ2O15056 1496 aa23.74■■□□□ 1.39
PRKCSH-201ENST00000585325 BIVM-ERCC5R4GMW8 1640 aa23.73■■□□□ 1.39
PRKCSH-201ENST00000585325 WRNQ14191 1432 aaPredicted RBP eCLIP23.73■■□□□ 1.39
PRKCSH-201ENST00000585325 TOP2BQ02880 1626 aa23.73■■□□□ 1.39
PRKCSH-201ENST00000585325 ADAMTS12P58397 1594 aa23.56■■□□□ 1.36
PRKCSH-201ENST00000585325 GRIN2AQ12879 1464 aa23.53■■□□□ 1.36
PRKCSH-201ENST00000585325 ERICH3Q5RHP9 1530 aa23.49■■□□□ 1.35
PRKCSH-201ENST00000585325 FHAD1B1AJZ9 1412 aa23.48■■□□□ 1.35
PRKCSH-201ENST00000585325 ERCC6L2Q5T890 1561 aa23.46■■□□□ 1.35
PRKCSH-201ENST00000585325 CEP170Q5SW79 1584 aa23.44■■□□□ 1.34
PRKCSH-201ENST00000585325 NUP160Q12769 1436 aa23.42■■□□□ 1.34
PRKCSH-201ENST00000585325 SHROOM2Q13796 1616 aa23.32■■□□□ 1.32
PRKCSH-201ENST00000585325 KIF27Q86VH2 1401 aa23.27■■□□□ 1.32
PRKCSH-201ENST00000585325 KIF13AQ9H1H9 1805 aa23.26■■□□□ 1.31
PRKCSH-201ENST00000585325 RUSC2Q8N2Y8 1516 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms