RNA–Protein interactions for RNA: ENST00000585294.5

CUEDC1-213, Transcript of CUE domain containing 1, humanhuman

TSL 3

Gene CUEDC1, Length 512 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1-213ENST00000585294 NISCHQ9Y2I1 1504 aa31.63■■■□□ 2.65
CUEDC1-213ENST00000585294 ABCC9O60706 1549 aa28.25■■■□□ 2.11
CUEDC1-213ENST00000585294 CCDC180Q9P1Z9 1646 aa28.19■■■□□ 2.1
CUEDC1-213ENST00000585294 RB1CC1Q8TDY2 1594 aa26.84■■□□□ 1.89
CUEDC1-213ENST00000585294 DCAF8L2P0C7V8 631 aa26.79■■□□□ 1.88
CUEDC1-213ENST00000585294 NACADO15069 1562 aa26.69■■□□□ 1.86
CUEDC1-213ENST00000585294 DNAJC5BQ9UF47 199 aa26.51■■□□□ 1.83
CUEDC1-213ENST00000585294 PABPN1Q86U42 306 aaKnown RBP eCLIP26.41■■□□□ 1.82
CUEDC1-213ENST00000585294 MYO15BQ96JP2 1530 aa26.33■■□□□ 1.81
CUEDC1-213ENST00000585294 ZCCHC6Q5VYS8 1495 aaKnown RBP26.22■■□□□ 1.79
CUEDC1-213ENST00000585294 UNC13AQ9UPW8 1703 aa26.2■■□□□ 1.79
CUEDC1-213ENST00000585294 BICRAQ9NZM4 1560 aa26.12■■□□□ 1.77
CUEDC1-213ENST00000585294 DCAF1Q9Y4B6 1507 aa26.06■■□□□ 1.76
CUEDC1-213ENST00000585294 SCRIBQ14160 1630 aa25.81■■□□□ 1.72
CUEDC1-213ENST00000585294 SHROOM4Q9ULL8 1493 aa25.64■■□□□ 1.69
CUEDC1-213ENST00000585294 CC2D2AQ9P2K1 1620 aa25.46■■□□□ 1.67
CUEDC1-213ENST00000585294 EIF4G1Q04637 1599 aaKnown RBP25.43■■□□□ 1.66
CUEDC1-213ENST00000585294 CECR2Q9BXF3 1484 aa25.4■■□□□ 1.66
CUEDC1-213ENST00000585294 NCAPD3P42695 1498 aa24.7■■□□□ 1.54
CUEDC1-213ENST00000585294 ATAD2BQ9ULI0 1458 aa24.65■■□□□ 1.54
CUEDC1-213ENST00000585294 SMARCA4P51532 1647 aa24.61■■□□□ 1.53
CUEDC1-213ENST00000585294 SMARCA2P51531 1590 aa24.51■■□□□ 1.51
CUEDC1-213ENST00000585294 BAZ1AQ9NRL2 1556 aaPredicted RBP24.49■■□□□ 1.51
CUEDC1-213ENST00000585294 HMGXB3Q12766 1538 aa24.45■■□□□ 1.5
CUEDC1-213ENST00000585294 MROH2BQ7Z745 1585 aa24.41■■□□□ 1.5
CUEDC1-213ENST00000585294 BAZ1BQ9UIG0 1483 aaKnown RBP24.38■■□□□ 1.49
CUEDC1-213ENST00000585294 PEG3Q9GZU2 1588 aa24.34■■□□□ 1.49
CUEDC1-213ENST00000585294 ERCC6Q03468 1493 aa24.32■■□□□ 1.48
CUEDC1-213ENST00000585294 NESP48681 1621 aa24.32■■□□□ 1.48
CUEDC1-213ENST00000585294 CUX2O14529 1486 aa24.19■■□□□ 1.46
CUEDC1-213ENST00000585294 DNAJC5Q9H3Z4 198 aa24.16■■□□□ 1.46
CUEDC1-213ENST00000585294 WIZO95785 1651 aa24.09■■□□□ 1.45
CUEDC1-213ENST00000585294 LAMC3Q9Y6N6 1575 aa24.04■■□□□ 1.44
CUEDC1-213ENST00000585294 RSF1Q96T23 1441 aaPredicted RBP23.97■■□□□ 1.43
CUEDC1-213ENST00000585294 CADPSQ9ULU8 1353 aa23.97■■□□□ 1.43
CUEDC1-213ENST00000585294 PDS5BQ9NTI5 1447 aa23.95■■□□□ 1.42
CUEDC1-213ENST00000585294 THOC2Q8NI27 1593 aaKnown RBP23.94■■□□□ 1.42
CUEDC1-213ENST00000585294 KIF21AQ7Z4S6 1674 aa23.9■■□□□ 1.42
CUEDC1-213ENST00000585294 TOP2AP11388 1531 aaKnown RBP23.76■■□□□ 1.39
CUEDC1-213ENST00000585294 MRC2Q9UBG0 1479 aa23.74■■□□□ 1.39
CUEDC1-213ENST00000585294 CFTRP13569 1480 aa23.7■■□□□ 1.38
CUEDC1-213ENST00000585294 FANCD2Q9BXW9 1451 aa23.68■■□□□ 1.38
CUEDC1-213ENST00000585294 CEP164Q9UPV0 1460 aa23.66■■□□□ 1.38
CUEDC1-213ENST00000585294 WDR62O43379 1518 aa23.65■■□□□ 1.38
CUEDC1-213ENST00000585294 CCDC88BA6NC98 1476 aa23.56■■□□□ 1.36
CUEDC1-213ENST00000585294 URB2Q14146 1524 aaKnown RBP23.5■■□□□ 1.35
CUEDC1-213ENST00000585294 PRDM2Q13029 1718 aa23.31■■□□□ 1.32
CUEDC1-213ENST00000585294 TOPBP1Q92547 1522 aa23.25■■□□□ 1.31
CUEDC1-213ENST00000585294 ZNF608Q9ULD9 1512 aaPredicted RBP23.22■■□□□ 1.31
CUEDC1-213ENST00000585294 OSCARQ8IYS5 282 aa23.21■■□□□ 1.31
CUEDC1-213ENST00000585294 IFT140Q96RY7 1462 aa23.19■■□□□ 1.3
CUEDC1-213ENST00000585294 TRIM41Q8WV44 630 aa23.19■■□□□ 1.3
CUEDC1-213ENST00000585294 ABCC8Q09428 1581 aa23.14■■□□□ 1.3
CUEDC1-213ENST00000585294 DNMBPQ6XZF7 1577 aa23.12■■□□□ 1.29
CUEDC1-213ENST00000585294 SUPT5HO00267 1087 aaKnown RBP23.09■■□□□ 1.29
CUEDC1-213ENST00000585294 AQRO60306 1485 aaKnown RBP eCLIP23.03■■□□□ 1.28
CUEDC1-213ENST00000585294 POLA1P09884 1462 aaPredicted RBP23.02■■□□□ 1.28
CUEDC1-213ENST00000585294 TARBP1Q13395 1621 aaKnown RBP23■■□□□ 1.27
CUEDC1-213ENST00000585294 EIF4G3O43432 1585 aaKnown RBP23■■□□□ 1.27
CUEDC1-213ENST00000585294 RAD54L2Q9Y4B4 1467 aa22.99■■□□□ 1.27
CUEDC1-213ENST00000585294 SOGA1O94964 1423 aa22.95■■□□□ 1.26
CUEDC1-213ENST00000585294 TDRD9Q8NDG6 1382 aaKnown RBP22.93■■□□□ 1.26
CUEDC1-213ENST00000585294 CUX1P39880 1505 aa22.91■■□□□ 1.26
CUEDC1-213ENST00000585294 FGD5Q6ZNL6 1462 aa22.9■■□□□ 1.26
CUEDC1-213ENST00000585294 FBLN2P98095 1184 aa22.88■■□□□ 1.25
CUEDC1-213ENST00000585294 RIMBP3CA6NJZ7 1639 aa22.82■■□□□ 1.24
CUEDC1-213ENST00000585294 RIMBP3BA6NNM3 1639 aa22.82■■□□□ 1.24
CUEDC1-213ENST00000585294 RIMBP3Q9UFD9 1639 aa22.82■■□□□ 1.24
CUEDC1-213ENST00000585294 CHD1O14646 1710 aa22.79■■□□□ 1.24
CUEDC1-213ENST00000585294 ARHGEF11O15085 1522 aa22.78■■□□□ 1.24
CUEDC1-213ENST00000585294 SNAPC4Q5SXM2 1469 aa22.74■■□□□ 1.23
CUEDC1-213ENST00000585294 CYB5RLQ6IPT4 315 aa22.72■■□□□ 1.23
CUEDC1-213ENST00000585294 CHMP7Q8WUX9 453 aaPredicted RBP22.7■■□□□ 1.22
CUEDC1-213ENST00000585294 GRIN2BQ13224 1484 aa22.69■■□□□ 1.22
CUEDC1-213ENST00000585294 WDR97A6NE52 1622 aa22.67■■□□□ 1.22
CUEDC1-213ENST00000585294 GAPVD1Q14C86 1478 aa22.64■■□□□ 1.21
CUEDC1-213ENST00000585294 MAGI1Q96QZ7 1491 aaPredicted RBP22.64■■□□□ 1.21
CUEDC1-213ENST00000585294 ABCA10Q8WWZ4 1543 aa22.62■■□□□ 1.21
CUEDC1-213ENST00000585294 SYNJ2O15056 1496 aa22.59■■□□□ 1.21
CUEDC1-213ENST00000585294 ARAP1Q96P48 1450 aa22.59■■□□□ 1.21
CUEDC1-213ENST00000585294 WRNQ14191 1432 aaPredicted RBP eCLIP22.57■■□□□ 1.2
CUEDC1-213ENST00000585294 CLASP1Q7Z460 1538 aa22.56■■□□□ 1.2
CUEDC1-213ENST00000585294 SYNJ1O43426 1573 aa22.55■■□□□ 1.2
CUEDC1-213ENST00000585294 ABCA5Q8WWZ7 1642 aa22.54■■□□□ 1.2
CUEDC1-213ENST00000585294 PBRM1Q86U86 1689 aa22.53■■□□□ 1.2
CUEDC1-213ENST00000585294 TOP2BQ02880 1626 aa22.52■■□□□ 1.2
CUEDC1-213ENST00000585294 BIVM-ERCC5R4GMW8 1640 aa22.49■■□□□ 1.19
CUEDC1-213ENST00000585294 TRHP20396 242 aaPredicted RBP22.4■■□□□ 1.18
CUEDC1-213ENST00000585294 GRIN2AQ12879 1464 aa22.4■■□□□ 1.18
CUEDC1-213ENST00000585294 ADAMTS12P58397 1594 aa22.37■■□□□ 1.17
CUEDC1-213ENST00000585294 FHAD1B1AJZ9 1412 aa22.35■■□□□ 1.17
CUEDC1-213ENST00000585294 NUP160Q12769 1436 aa22.32■■□□□ 1.16
CUEDC1-213ENST00000585294 CEP170Q5SW79 1584 aa22.32■■□□□ 1.16
CUEDC1-213ENST00000585294 ERICH3Q5RHP9 1530 aa22.31■■□□□ 1.16
CUEDC1-213ENST00000585294 ERCC6L2Q5T890 1561 aa22.29■■□□□ 1.16
CUEDC1-213ENST00000585294 IGF1RP08069 1367 aa22.17■■□□□ 1.14
CUEDC1-213ENST00000585294 JPH4Q96JJ6 628 aa22.17■■□□□ 1.14
CUEDC1-213ENST00000585294 SHROOM2Q13796 1616 aa22.17■■□□□ 1.14
CUEDC1-213ENST00000585294 PRG4Q92954 1404 aaPredicted RBP22.14■■□□□ 1.13
CUEDC1-213ENST00000585294 KIF27Q86VH2 1401 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 225.3 ms