RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 NISCHQ9Y2I1 1504 aa46.54■■■■■ 5.04
TOP3A-220ENST00000585031 ABCC9O60706 1549 aa42.72■■■■■ 4.43
TOP3A-220ENST00000585031 CCDC180Q9P1Z9 1646 aa41.98■■■■■ 4.31
TOP3A-220ENST00000585031 DNAJC5BQ9UF47 199 aa40.97■■■■■ 4.15
TOP3A-220ENST00000585031 RB1CC1Q8TDY2 1594 aa40.27■■■■■ 4.04
TOP3A-220ENST00000585031 NACADO15069 1562 aa39.84■■■■□ 3.97
TOP3A-220ENST00000585031 PABPN1Q86U42 306 aaKnown RBP eCLIP39.71■■■■□ 3.95
TOP3A-220ENST00000585031 UNC13AQ9UPW8 1703 aa39.56■■■■□ 3.92
TOP3A-220ENST00000585031 DCAF8L2P0C7V8 631 aa39.55■■■■□ 3.92
TOP3A-220ENST00000585031 BICRAQ9NZM4 1560 aa39.29■■■■□ 3.88
TOP3A-220ENST00000585031 MYO15BQ96JP2 1530 aa39.04■■■■□ 3.84
TOP3A-220ENST00000585031 CC2D2AQ9P2K1 1620 aa38.56■■■■□ 3.76
TOP3A-220ENST00000585031 CECR2Q9BXF3 1484 aa38.52■■■■□ 3.76
TOP3A-220ENST00000585031 SHROOM4Q9ULL8 1493 aa38.46■■■■□ 3.75
TOP3A-220ENST00000585031 ZCCHC6Q5VYS8 1495 aaKnown RBP38.41■■■■□ 3.74
TOP3A-220ENST00000585031 DCAF1Q9Y4B6 1507 aa38.33■■■■□ 3.73
TOP3A-220ENST00000585031 SCRIBQ14160 1630 aa38.3■■■■□ 3.72
TOP3A-220ENST00000585031 EIF4G1Q04637 1599 aaKnown RBP38.28■■■■□ 3.72
TOP3A-220ENST00000585031 DNAJC5Q9H3Z4 198 aa38.23■■■■□ 3.71
TOP3A-220ENST00000585031 CUX2O14529 1486 aa37.12■■■■□ 3.53
TOP3A-220ENST00000585031 NCAPD3P42695 1498 aa36.83■■■■□ 3.49
TOP3A-220ENST00000585031 ERCC6Q03468 1493 aa36.82■■■■□ 3.49
TOP3A-220ENST00000585031 ATAD2BQ9ULI0 1458 aa36.65■■■■□ 3.46
TOP3A-220ENST00000585031 NESP48681 1621 aa36.58■■■■□ 3.45
TOP3A-220ENST00000585031 HMGXB3Q12766 1538 aa36.46■■■■□ 3.43
TOP3A-220ENST00000585031 SMARCA4P51532 1647 aa36.45■■■■□ 3.43
TOP3A-220ENST00000585031 SMARCA2P51531 1590 aa36.43■■■■□ 3.42
TOP3A-220ENST00000585031 THOC2Q8NI27 1593 aaKnown RBP36.27■■■■□ 3.4
TOP3A-220ENST00000585031 BAZ1BQ9UIG0 1483 aaKnown RBP36.2■■■■□ 3.39
TOP3A-220ENST00000585031 BAZ1AQ9NRL2 1556 aaPredicted RBP36.09■■■■□ 3.37
TOP3A-220ENST00000585031 PEG3Q9GZU2 1588 aa36.07■■■■□ 3.37
TOP3A-220ENST00000585031 KIF21AQ7Z4S6 1674 aa36.07■■■■□ 3.36
TOP3A-220ENST00000585031 LAMC3Q9Y6N6 1575 aa36.06■■■■□ 3.36
TOP3A-220ENST00000585031 TRIM41Q8WV44 630 aa36.06■■■■□ 3.36
TOP3A-220ENST00000585031 MROH2BQ7Z745 1585 aa35.92■■■■□ 3.34
TOP3A-220ENST00000585031 PDS5BQ9NTI5 1447 aa35.86■■■■□ 3.33
TOP3A-220ENST00000585031 CADPSQ9ULU8 1353 aa35.66■■■■□ 3.3
TOP3A-220ENST00000585031 MRC2Q9UBG0 1479 aa35.62■■■■□ 3.29
TOP3A-220ENST00000585031 WDR62O43379 1518 aa35.57■■■■□ 3.29
TOP3A-220ENST00000585031 WIZO95785 1651 aa35.47■■■■□ 3.27
TOP3A-220ENST00000585031 OSCARQ8IYS5 282 aa35.39■■■■□ 3.26
TOP3A-220ENST00000585031 CEP164Q9UPV0 1460 aa35.33■■■■□ 3.25
TOP3A-220ENST00000585031 FANCD2Q9BXW9 1451 aa35.28■■■■□ 3.24
TOP3A-220ENST00000585031 CFTRP13569 1480 aa35.14■■■■□ 3.22
TOP3A-220ENST00000585031 URB2Q14146 1524 aaKnown RBP35.1■■■■□ 3.21
TOP3A-220ENST00000585031 RIMBP3CA6NJZ7 1639 aa34.91■■■■□ 3.18
TOP3A-220ENST00000585031 RIMBP3BA6NNM3 1639 aa34.91■■■■□ 3.18
TOP3A-220ENST00000585031 RIMBP3Q9UFD9 1639 aa34.91■■■■□ 3.18
TOP3A-220ENST00000585031 RSF1Q96T23 1441 aaPredicted RBP34.9■■■■□ 3.18
TOP3A-220ENST00000585031 TOP2AP11388 1531 aaKnown RBP34.86■■■■□ 3.17
TOP3A-220ENST00000585031 ZNF608Q9ULD9 1512 aaPredicted RBP34.8■■■■□ 3.16
TOP3A-220ENST00000585031 PRDM2Q13029 1718 aa34.75■■■■□ 3.15
TOP3A-220ENST00000585031 ARHGEF11O15085 1522 aa34.7■■■■□ 3.14
TOP3A-220ENST00000585031 IFT140Q96RY7 1462 aa34.64■■■■□ 3.14
TOP3A-220ENST00000585031 CYB5RLQ6IPT4 315 aa34.6■■■■□ 3.13
TOP3A-220ENST00000585031 TOPBP1Q92547 1522 aa34.55■■■■□ 3.12
TOP3A-220ENST00000585031 CCDC88BA6NC98 1476 aa34.55■■■■□ 3.12
TOP3A-220ENST00000585031 EIF4G3O43432 1585 aaKnown RBP34.5■■■■□ 3.11
TOP3A-220ENST00000585031 TRHP20396 242 aaPredicted RBP34.43■■■■□ 3.1
TOP3A-220ENST00000585031 CHD1O14646 1710 aa34.42■■■■□ 3.1
TOP3A-220ENST00000585031 AQRO60306 1485 aaKnown RBP eCLIP34.37■■■■□ 3.094e-6■■□□□ 14.3
TOP3A-220ENST00000585031 TARBP1Q13395 1621 aaKnown RBP34.35■■■■□ 3.09
TOP3A-220ENST00000585031 ARAP1Q96P48 1450 aa34.34■■■■□ 3.09
TOP3A-220ENST00000585031 DNMBPQ6XZF7 1577 aa34.34■■■■□ 3.09
TOP3A-220ENST00000585031 ABCC8Q09428 1581 aa34.31■■■■□ 3.08
TOP3A-220ENST00000585031 FBLN2P98095 1184 aa34.19■■■■□ 3.06
TOP3A-220ENST00000585031 POLA1P09884 1462 aaPredicted RBP34.17■■■■□ 3.06
TOP3A-220ENST00000585031 RAD54L2Q9Y4B4 1467 aa34.11■■■■□ 3.05
TOP3A-220ENST00000585031 TDRD9Q8NDG6 1382 aaKnown RBP34.04■■■■□ 3.04
TOP3A-220ENST00000585031 AEBP2Q6ZN18 517 aaPredicted RBP34.04■■■■□ 3.04
TOP3A-220ENST00000585031 SOGA1O94964 1423 aa33.97■■■■□ 3.03
TOP3A-220ENST00000585031 CLASP1Q7Z460 1538 aa33.97■■■■□ 3.03
TOP3A-220ENST00000585031 SNAPC4Q5SXM2 1469 aa33.95■■■■□ 3.02
TOP3A-220ENST00000585031 FGD5Q6ZNL6 1462 aa33.85■■■■□ 3.01
TOP3A-220ENST00000585031 CHMP7Q8WUX9 453 aaPredicted RBP33.82■■■■□ 3
TOP3A-220ENST00000585031 SYNJ1O43426 1573 aa33.79■■■■□ 3
TOP3A-220ENST00000585031 WDR97A6NE52 1622 aa33.78■■■■□ 3
TOP3A-220ENST00000585031 CUX1P39880 1505 aa33.77■■■■□ 3
TOP3A-220ENST00000585031 MAGI1Q96QZ7 1491 aaPredicted RBP33.76■■■■□ 3
TOP3A-220ENST00000585031 GRIN2BQ13224 1484 aa33.71■■■□□ 2.99
TOP3A-220ENST00000585031 SYNJ2O15056 1496 aa33.69■■■□□ 2.98
TOP3A-220ENST00000585031 GAPVD1Q14C86 1478 aa33.62■■■□□ 2.97
TOP3A-220ENST00000585031 PBRM1Q86U86 1689 aa33.61■■■□□ 2.97
TOP3A-220ENST00000585031 ERCC6L2Q5T890 1561 aa33.51■■■□□ 2.95
TOP3A-220ENST00000585031 ABCA5Q8WWZ7 1642 aa33.45■■■□□ 2.95
TOP3A-220ENST00000585031 ABCA10Q8WWZ4 1543 aa33.4■■■□□ 2.94
TOP3A-220ENST00000585031 GRIN2AQ12879 1464 aa33.31■■■□□ 2.92
TOP3A-220ENST00000585031 CEP170Q5SW79 1584 aa33.29■■■□□ 2.92
TOP3A-220ENST00000585031 NUP160Q12769 1436 aa33.24■■■□□ 2.91
TOP3A-220ENST00000585031 ADAMTS12P58397 1594 aa33.22■■■□□ 2.91
TOP3A-220ENST00000585031 SHROOM2Q13796 1616 aa33.2■■■□□ 2.9
TOP3A-220ENST00000585031 KIF13AQ9H1H9 1805 aa33.18■■■□□ 2.9
TOP3A-220ENST00000585031 WRNQ14191 1432 aaPredicted RBP eCLIP33.09■■■□□ 2.89
TOP3A-220ENST00000585031 FHAD1B1AJZ9 1412 aa33.06■■■□□ 2.88
TOP3A-220ENST00000585031 BIVM-ERCC5R4GMW8 1640 aa33.02■■■□□ 2.88
TOP3A-220ENST00000585031 TOP2BQ02880 1626 aa32.99■■■□□ 2.87
TOP3A-220ENST00000585031 PRG4Q92954 1404 aaPredicted RBP32.97■■■□□ 2.87
TOP3A-220ENST00000585031 ERICH3Q5RHP9 1530 aa32.94■■■□□ 2.86
TOP3A-220ENST00000585031 JPH4Q96JJ6 628 aa32.9■■■□□ 2.86
TOP3A-220ENST00000585031 FAM69CQ0P6D2 419 aa32.89■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms