RNA–Protein interactions for RNA: ENST00000584939.1

ITGB4-213, Transcript of integrin subunit beta 4, humanhuman

TSL 3

Gene ITGB4, Length 603 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-213ENST00000584939 NISCHQ9Y2I1 1504 aa42.31■■■■■ 4.36
ITGB4-213ENST00000584939 CCDC180Q9P1Z9 1646 aa37.73■■■■□ 3.63
ITGB4-213ENST00000584939 ABCC9O60706 1549 aa37.51■■■■□ 3.6
ITGB4-213ENST00000584939 RB1CC1Q8TDY2 1594 aa35.81■■■■□ 3.32
ITGB4-213ENST00000584939 DCAF8L2P0C7V8 631 aa35.69■■■■□ 3.3
ITGB4-213ENST00000584939 NACADO15069 1562 aa35.65■■■■□ 3.3
ITGB4-213ENST00000584939 MYO15BQ96JP2 1530 aa35.27■■■■□ 3.24
ITGB4-213ENST00000584939 ZCCHC6Q5VYS8 1495 aaKnown RBP35.12■■■■□ 3.21
ITGB4-213ENST00000584939 PABPN1Q86U42 306 aaKnown RBP eCLIP35.04■■■■□ 3.2
ITGB4-213ENST00000584939 DCAF1Q9Y4B6 1507 aa34.95■■■■□ 3.19
ITGB4-213ENST00000584939 DNAJC5BQ9UF47 199 aa34.93■■■■□ 3.18
ITGB4-213ENST00000584939 UNC13AQ9UPW8 1703 aa34.9■■■■□ 3.18
ITGB4-213ENST00000584939 BICRAQ9NZM4 1560 aa34.74■■■■□ 3.15
ITGB4-213ENST00000584939 SCRIBQ14160 1630 aa34.46■■■■□ 3.11
ITGB4-213ENST00000584939 SHROOM4Q9ULL8 1493 aa34.31■■■■□ 3.08
ITGB4-213ENST00000584939 EIF4G1Q04637 1599 aaKnown RBP33.87■■■■□ 3.01
ITGB4-213ENST00000584939 CC2D2AQ9P2K1 1620 aa33.86■■■■□ 3.01
ITGB4-213ENST00000584939 CECR2Q9BXF3 1484 aa33.76■■■□□ 2.99
ITGB4-213ENST00000584939 NCAPD3P42695 1498 aa32.95■■■□□ 2.87
ITGB4-213ENST00000584939 SMARCA4P51532 1647 aa32.9■■■□□ 2.86
ITGB4-213ENST00000584939 ATAD2BQ9ULI0 1458 aa32.89■■■□□ 2.86
ITGB4-213ENST00000584939 BAZ1AQ9NRL2 1556 aaPredicted RBP32.81■■■□□ 2.84
ITGB4-213ENST00000584939 SMARCA2P51531 1590 aa32.79■■■□□ 2.84
ITGB4-213ENST00000584939 HMGXB3Q12766 1538 aa32.68■■■□□ 2.82
ITGB4-213ENST00000584939 MROH2BQ7Z745 1585 aa32.62■■■□□ 2.81
ITGB4-213ENST00000584939 BAZ1BQ9UIG0 1483 aaKnown RBP32.59■■■□□ 2.81
ITGB4-213ENST00000584939 PEG3Q9GZU2 1588 aa32.57■■■□□ 2.8
ITGB4-213ENST00000584939 ERCC6Q03468 1493 aa32.36■■■□□ 2.77
ITGB4-213ENST00000584939 NESP48681 1621 aa32.31■■■□□ 2.76
ITGB4-213ENST00000584939 WIZO95785 1651 aa32.21■■■□□ 2.75
ITGB4-213ENST00000584939 CUX2O14529 1486 aa32.16■■■□□ 2.74
ITGB4-213ENST00000584939 LAMC3Q9Y6N6 1575 aa32.1■■■□□ 2.73
ITGB4-213ENST00000584939 RSF1Q96T23 1441 aaPredicted RBP32.09■■■□□ 2.73
ITGB4-213ENST00000584939 CADPSQ9ULU8 1353 aa31.99■■■□□ 2.71
ITGB4-213ENST00000584939 PDS5BQ9NTI5 1447 aa31.97■■■□□ 2.71
ITGB4-213ENST00000584939 THOC2Q8NI27 1593 aaKnown RBP31.85■■■□□ 2.69
ITGB4-213ENST00000584939 TOP2AP11388 1531 aaKnown RBP31.84■■■□□ 2.69
ITGB4-213ENST00000584939 DNAJC5Q9H3Z4 198 aa31.82■■■□□ 2.68
ITGB4-213ENST00000584939 KIF21AQ7Z4S6 1674 aa31.82■■■□□ 2.68
ITGB4-213ENST00000584939 CFTRP13569 1480 aa31.66■■■□□ 2.66
ITGB4-213ENST00000584939 MRC2Q9UBG0 1479 aa31.65■■■□□ 2.66
ITGB4-213ENST00000584939 FANCD2Q9BXW9 1451 aa31.6■■■□□ 2.65
ITGB4-213ENST00000584939 CEP164Q9UPV0 1460 aa31.59■■■□□ 2.65
ITGB4-213ENST00000584939 WDR62O43379 1518 aa31.52■■■□□ 2.64
ITGB4-213ENST00000584939 CCDC88BA6NC98 1476 aa31.52■■■□□ 2.64
ITGB4-213ENST00000584939 URB2Q14146 1524 aaKnown RBP31.3■■■□□ 2.6
ITGB4-213ENST00000584939 PRDM2Q13029 1718 aa31.24■■■□□ 2.59
ITGB4-213ENST00000584939 TOPBP1Q92547 1522 aa31.03■■■□□ 2.56
ITGB4-213ENST00000584939 SUPT5HO00267 1087 aaKnown RBP31.01■■■□□ 2.55
ITGB4-213ENST00000584939 ABCC8Q09428 1581 aa30.99■■■□□ 2.55
ITGB4-213ENST00000584939 IFT140Q96RY7 1462 aa30.95■■■□□ 2.55
ITGB4-213ENST00000584939 DNMBPQ6XZF7 1577 aa30.92■■■□□ 2.54
ITGB4-213ENST00000584939 ZNF608Q9ULD9 1512 aaPredicted RBP30.88■■■□□ 2.53
ITGB4-213ENST00000584939 OSCARQ8IYS5 282 aa30.83■■■□□ 2.53
ITGB4-213ENST00000584939 POLA1P09884 1462 aaPredicted RBP30.73■■■□□ 2.51
ITGB4-213ENST00000584939 TARBP1Q13395 1621 aaKnown RBP30.69■■■□□ 2.5
ITGB4-213ENST00000584939 AQRO60306 1485 aaKnown RBP eCLIP30.67■■■□□ 2.5
ITGB4-213ENST00000584939 EIF4G3O43432 1585 aaKnown RBP30.66■■■□□ 2.5
ITGB4-213ENST00000584939 SOGA1O94964 1423 aa30.64■■■□□ 2.5
ITGB4-213ENST00000584939 RAD54L2Q9Y4B4 1467 aa30.64■■■□□ 2.5
ITGB4-213ENST00000584939 CUX1P39880 1505 aa30.62■■■□□ 2.49
ITGB4-213ENST00000584939 FGD5Q6ZNL6 1462 aa30.59■■■□□ 2.49
ITGB4-213ENST00000584939 TRIM41Q8WV44 630 aa30.59■■■□□ 2.49
ITGB4-213ENST00000584939 TDRD9Q8NDG6 1382 aaKnown RBP30.54■■■□□ 2.48
ITGB4-213ENST00000584939 FBLN2P98095 1184 aa30.45■■■□□ 2.47
ITGB4-213ENST00000584939 WDR97A6NE52 1622 aa30.38■■■□□ 2.45
ITGB4-213ENST00000584939 CHD1O14646 1710 aa30.34■■■□□ 2.45
ITGB4-213ENST00000584939 SNAPC4Q5SXM2 1469 aa30.33■■■□□ 2.45
ITGB4-213ENST00000584939 GRIN2BQ13224 1484 aa30.31■■■□□ 2.44
ITGB4-213ENST00000584939 RIMBP3CA6NJZ7 1639 aa30.28■■■□□ 2.44
ITGB4-213ENST00000584939 RIMBP3BA6NNM3 1639 aa30.28■■■□□ 2.44
ITGB4-213ENST00000584939 RIMBP3Q9UFD9 1639 aa30.28■■■□□ 2.44
ITGB4-213ENST00000584939 CHMP7Q8WUX9 453 aaPredicted RBP30.27■■■□□ 2.44
ITGB4-213ENST00000584939 ABCA10Q8WWZ4 1543 aa30.27■■■□□ 2.44
ITGB4-213ENST00000584939 WRNQ14191 1432 aaPredicted RBP eCLIP30.26■■■□□ 2.43
ITGB4-213ENST00000584939 GAPVD1Q14C86 1478 aa30.25■■■□□ 2.43
ITGB4-213ENST00000584939 MAGI1Q96QZ7 1491 aaPredicted RBP30.25■■■□□ 2.43
ITGB4-213ENST00000584939 ARHGEF11O15085 1522 aa30.25■■■□□ 2.43
ITGB4-213ENST00000584939 TOP2BQ02880 1626 aa30.19■■■□□ 2.42
ITGB4-213ENST00000584939 SYNJ1O43426 1573 aa30.17■■■□□ 2.42
ITGB4-213ENST00000584939 BIVM-ERCC5R4GMW8 1640 aa30.16■■■□□ 2.42
ITGB4-213ENST00000584939 SYNJ2O15056 1496 aa30.16■■■□□ 2.42
ITGB4-213ENST00000584939 ABCA5Q8WWZ7 1642 aa30.14■■■□□ 2.41
ITGB4-213ENST00000584939 PBRM1Q86U86 1689 aa30.11■■■□□ 2.41
ITGB4-213ENST00000584939 CYB5RLQ6IPT4 315 aa30.09■■■□□ 2.41
ITGB4-213ENST00000584939 CLASP1Q7Z460 1538 aa30.05■■■□□ 2.4
ITGB4-213ENST00000584939 ARAP1Q96P48 1450 aa29.99■■■□□ 2.39
ITGB4-213ENST00000584939 GRIN2AQ12879 1464 aa29.9■■■□□ 2.38
ITGB4-213ENST00000584939 ADAMTS12P58397 1594 aa29.9■■■□□ 2.38
ITGB4-213ENST00000584939 FHAD1B1AJZ9 1412 aa29.88■■■□□ 2.37
ITGB4-213ENST00000584939 ERICH3Q5RHP9 1530 aa29.88■■■□□ 2.37
ITGB4-213ENST00000584939 NUP160Q12769 1436 aa29.79■■■□□ 2.36
ITGB4-213ENST00000584939 CEP170Q5SW79 1584 aa29.76■■■□□ 2.35
ITGB4-213ENST00000584939 KIF27Q86VH2 1401 aa29.67■■■□□ 2.34
ITGB4-213ENST00000584939 TRHP20396 242 aaPredicted RBP29.65■■■□□ 2.34
ITGB4-213ENST00000584939 IGF1RP08069 1367 aa29.64■■■□□ 2.34
ITGB4-213ENST00000584939 ERCC6L2Q5T890 1561 aa29.62■■■□□ 2.33
ITGB4-213ENST00000584939 SHROOM2Q13796 1616 aa29.57■■■□□ 2.32
ITGB4-213ENST00000584939 JPH4Q96JJ6 628 aa29.56■■■□□ 2.32
ITGB4-213ENST00000584939 PRG4Q92954 1404 aaPredicted RBP29.52■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms