RNA–Protein interactions for RNA: ENST00000584887.1

TOP3A-219, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 545 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-219ENST00000584887 NISCHQ9Y2I1 1504 aa50.77■■■■■ 5.72
TOP3A-219ENST00000584887 CCDC180Q9P1Z9 1646 aa45.44■■■■■ 4.87
TOP3A-219ENST00000584887 ABCC9O60706 1549 aa45.38■■■■■ 4.86
TOP3A-219ENST00000584887 RB1CC1Q8TDY2 1594 aa43.21■■■■■ 4.51
TOP3A-219ENST00000584887 DCAF8L2P0C7V8 631 aa42.94■■■■■ 4.46
TOP3A-219ENST00000584887 NACADO15069 1562 aa42.94■■■■■ 4.46
TOP3A-219ENST00000584887 MYO15BQ96JP2 1530 aa42.34■■■■■ 4.37
TOP3A-219ENST00000584887 DNAJC5BQ9UF47 199 aa42.32■■■■■ 4.37
TOP3A-219ENST00000584887 PABPN1Q86U42 306 aaKnown RBP eCLIP42.3■■■■■ 4.36
TOP3A-219ENST00000584887 UNC13AQ9UPW8 1703 aa42.2■■■■■ 4.35
TOP3A-219ENST00000584887 ZCCHC6Q5VYS8 1495 aaKnown RBP42.12■■■■■ 4.33
TOP3A-219ENST00000584887 BICRAQ9NZM4 1560 aa41.91■■■■■ 4.3
TOP3A-219ENST00000584887 DCAF1Q9Y4B6 1507 aa41.88■■■■■ 4.29
TOP3A-219ENST00000584887 SCRIBQ14160 1630 aa41.55■■■■■ 4.24
TOP3A-219ENST00000584887 SHROOM4Q9ULL8 1493 aa41.33■■■■■ 4.21
TOP3A-219ENST00000584887 CC2D2AQ9P2K1 1620 aa40.94■■■■■ 4.14
TOP3A-219ENST00000584887 EIF4G1Q04637 1599 aaKnown RBP40.9■■■■■ 4.14
TOP3A-219ENST00000584887 CECR2Q9BXF3 1484 aa40.83■■■■■ 4.13
TOP3A-219ENST00000584887 NCAPD3P42695 1498 aa39.62■■■■□ 3.93
TOP3A-219ENST00000584887 SMARCA4P51532 1647 aa39.58■■■■□ 3.93
TOP3A-219ENST00000584887 ATAD2BQ9ULI0 1458 aa39.56■■■■□ 3.92
TOP3A-219ENST00000584887 SMARCA2P51531 1590 aa39.47■■■■□ 3.91
TOP3A-219ENST00000584887 BAZ1AQ9NRL2 1556 aaPredicted RBP39.41■■■■□ 3.9
TOP3A-219ENST00000584887 HMGXB3Q12766 1538 aa39.36■■■■□ 3.89
TOP3A-219ENST00000584887 BAZ1BQ9UIG0 1483 aaKnown RBP39.24■■■■□ 3.87
TOP3A-219ENST00000584887 ERCC6Q03468 1493 aa39.19■■■■□ 3.86
TOP3A-219ENST00000584887 MROH2BQ7Z745 1585 aa39.15■■■■□ 3.86
TOP3A-219ENST00000584887 PEG3Q9GZU2 1588 aa39.12■■■■□ 3.85
TOP3A-219ENST00000584887 NESP48681 1621 aa39.02■■■■□ 3.84
TOP3A-219ENST00000584887 CUX2O14529 1486 aa38.95■■■■□ 3.83
TOP3A-219ENST00000584887 LAMC3Q9Y6N6 1575 aa38.71■■■■□ 3.79
TOP3A-219ENST00000584887 DNAJC5Q9H3Z4 198 aa38.71■■■■□ 3.79
TOP3A-219ENST00000584887 WIZO95785 1651 aa38.7■■■■□ 3.79
TOP3A-219ENST00000584887 THOC2Q8NI27 1593 aaKnown RBP38.53■■■■□ 3.76
TOP3A-219ENST00000584887 PDS5BQ9NTI5 1447 aa38.52■■■■□ 3.76
TOP3A-219ENST00000584887 KIF21AQ7Z4S6 1674 aa38.49■■■■□ 3.75
TOP3A-219ENST00000584887 CADPSQ9ULU8 1353 aa38.46■■■■□ 3.75
TOP3A-219ENST00000584887 RSF1Q96T23 1441 aaPredicted RBP38.4■■■■□ 3.74
TOP3A-219ENST00000584887 TOP2AP11388 1531 aaKnown RBP38.22■■■■□ 3.71
TOP3A-219ENST00000584887 MRC2Q9UBG0 1479 aa38.19■■■■□ 3.7
TOP3A-219ENST00000584887 CEP164Q9UPV0 1460 aa38.09■■■■□ 3.69
TOP3A-219ENST00000584887 FANCD2Q9BXW9 1451 aa38.06■■■■□ 3.68
TOP3A-219ENST00000584887 WDR62O43379 1518 aa38.05■■■■□ 3.68
TOP3A-219ENST00000584887 CFTRP13569 1480 aa38.04■■■■□ 3.68
TOP3A-219ENST00000584887 CCDC88BA6NC98 1476 aa37.78■■■■□ 3.64
TOP3A-219ENST00000584887 URB2Q14146 1524 aaKnown RBP37.71■■■■□ 3.63
TOP3A-219ENST00000584887 PRDM2Q13029 1718 aa37.67■■■■□ 3.62
TOP3A-219ENST00000584887 TOPBP1Q92547 1522 aa37.35■■■■□ 3.57
TOP3A-219ENST00000584887 IFT140Q96RY7 1462 aa37.3■■■■□ 3.56
TOP3A-219ENST00000584887 OSCARQ8IYS5 282 aa37.25■■■■□ 3.55
TOP3A-219ENST00000584887 TRIM41Q8WV44 630 aa37.25■■■■□ 3.55
TOP3A-219ENST00000584887 ABCC8Q09428 1581 aa37.25■■■■□ 3.55
TOP3A-219ENST00000584887 ZNF608Q9ULD9 1512 aaPredicted RBP37.24■■■■□ 3.55
TOP3A-219ENST00000584887 DNMBPQ6XZF7 1577 aa37.22■■■■□ 3.55
TOP3A-219ENST00000584887 EIF4G3O43432 1585 aaKnown RBP37.04■■■■□ 3.52
TOP3A-219ENST00000584887 SUPT5HO00267 1087 aaKnown RBP36.99■■■■□ 3.51
TOP3A-219ENST00000584887 POLA1P09884 1462 aaPredicted RBP36.98■■■■□ 3.51
TOP3A-219ENST00000584887 TARBP1Q13395 1621 aaKnown RBP36.96■■■■□ 3.51
TOP3A-219ENST00000584887 AQRO60306 1485 aaKnown RBP eCLIP36.94■■■■□ 3.54e-6■■□□□ 14.3
TOP3A-219ENST00000584887 RAD54L2Q9Y4B4 1467 aa36.87■■■■□ 3.49
TOP3A-219ENST00000584887 SOGA1O94964 1423 aa36.83■■■■□ 3.49
TOP3A-219ENST00000584887 FGD5Q6ZNL6 1462 aa36.8■■■■□ 3.48
TOP3A-219ENST00000584887 CUX1P39880 1505 aa36.79■■■■□ 3.48
TOP3A-219ENST00000584887 TDRD9Q8NDG6 1382 aaKnown RBP36.76■■■■□ 3.47
TOP3A-219ENST00000584887 FBLN2P98095 1184 aa36.74■■■■□ 3.47
TOP3A-219ENST00000584887 RIMBP3CA6NJZ7 1639 aa36.74■■■■□ 3.47
TOP3A-219ENST00000584887 RIMBP3BA6NNM3 1639 aa36.74■■■■□ 3.47
TOP3A-219ENST00000584887 RIMBP3Q9UFD9 1639 aa36.74■■■■□ 3.47
TOP3A-219ENST00000584887 CHD1O14646 1710 aa36.73■■■■□ 3.47
TOP3A-219ENST00000584887 ARHGEF11O15085 1522 aa36.64■■■■□ 3.46
TOP3A-219ENST00000584887 SNAPC4Q5SXM2 1469 aa36.58■■■■□ 3.45
TOP3A-219ENST00000584887 WDR97A6NE52 1622 aa36.57■■■■□ 3.44
TOP3A-219ENST00000584887 GRIN2BQ13224 1484 aa36.48■■■■□ 3.43
TOP3A-219ENST00000584887 MAGI1Q96QZ7 1491 aaPredicted RBP36.45■■■■□ 3.43
TOP3A-219ENST00000584887 CHMP7Q8WUX9 453 aaPredicted RBP36.45■■■■□ 3.43
TOP3A-219ENST00000584887 CYB5RLQ6IPT4 315 aa36.41■■■■□ 3.42
TOP3A-219ENST00000584887 GAPVD1Q14C86 1478 aa36.38■■■■□ 3.41
TOP3A-219ENST00000584887 ABCA10Q8WWZ4 1543 aa36.35■■■■□ 3.41
TOP3A-219ENST00000584887 PBRM1Q86U86 1689 aa36.35■■■■□ 3.41
TOP3A-219ENST00000584887 SYNJ2O15056 1496 aa36.32■■■■□ 3.41
TOP3A-219ENST00000584887 SYNJ1O43426 1573 aa36.32■■■■□ 3.4
TOP3A-219ENST00000584887 ARAP1Q96P48 1450 aa36.31■■■■□ 3.4
TOP3A-219ENST00000584887 WRNQ14191 1432 aaPredicted RBP eCLIP36.28■■■■□ 3.4
TOP3A-219ENST00000584887 ABCA5Q8WWZ7 1642 aa36.27■■■■□ 3.4
TOP3A-219ENST00000584887 CLASP1Q7Z460 1538 aa36.27■■■■□ 3.4
TOP3A-219ENST00000584887 TOP2BQ02880 1626 aa36.22■■■■□ 3.39
TOP3A-219ENST00000584887 BIVM-ERCC5R4GMW8 1640 aa36.21■■■■□ 3.39
TOP3A-219ENST00000584887 ADAMTS12P58397 1594 aa36.02■■■■□ 3.36
TOP3A-219ENST00000584887 GRIN2AQ12879 1464 aa36.01■■■■□ 3.36
TOP3A-219ENST00000584887 TRHP20396 242 aaPredicted RBP35.99■■■■□ 3.35
TOP3A-219ENST00000584887 FHAD1B1AJZ9 1412 aa35.92■■■■□ 3.34
TOP3A-219ENST00000584887 ERICH3Q5RHP9 1530 aa35.89■■■■□ 3.34
TOP3A-219ENST00000584887 CEP170Q5SW79 1584 aa35.87■■■■□ 3.33
TOP3A-219ENST00000584887 NUP160Q12769 1436 aa35.85■■■■□ 3.33
TOP3A-219ENST00000584887 ERCC6L2Q5T890 1561 aa35.76■■■■□ 3.32
TOP3A-219ENST00000584887 SHROOM2Q13796 1616 aa35.65■■■■□ 3.3
TOP3A-219ENST00000584887 KIF27Q86VH2 1401 aa35.57■■■■□ 3.28
TOP3A-219ENST00000584887 PRG4Q92954 1404 aaPredicted RBP35.55■■■■□ 3.28
TOP3A-219ENST00000584887 JPH4Q96JJ6 628 aa35.52■■■■□ 3.28
TOP3A-219ENST00000584887 RUSC2Q8N2Y8 1516 aa35.5■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms