RNA–Protein interactions for RNA: ENST00000584684.1

ERBB2-220, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 3

Gene ERBB2, Length 649 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-220ENST00000584684 NISCHQ9Y2I1 1504 aa32.61■■■□□ 2.81
ERBB2-220ENST00000584684 CCDC180Q9P1Z9 1646 aa29.2■■■□□ 2.27
ERBB2-220ENST00000584684 ABCC9O60706 1549 aa28.62■■■□□ 2.17
ERBB2-220ENST00000584684 RB1CC1Q8TDY2 1594 aa27.54■■■□□ 2
ERBB2-220ENST00000584684 NACADO15069 1562 aa27.46■■□□□ 1.99
ERBB2-220ENST00000584684 MYO15BQ96JP2 1530 aa27.29■■□□□ 1.96
ERBB2-220ENST00000584684 ZCCHC6Q5VYS8 1495 aaKnown RBP27.16■■□□□ 1.94
ERBB2-220ENST00000584684 DCAF8L2P0C7V8 631 aa27.07■■□□□ 1.92
ERBB2-220ENST00000584684 DCAF1Q9Y4B6 1507 aa27.06■■□□□ 1.92
ERBB2-220ENST00000584684 UNC13AQ9UPW8 1703 aa26.92■■□□□ 1.9
ERBB2-220ENST00000584684 BICRAQ9NZM4 1560 aa26.71■■□□□ 1.87
ERBB2-220ENST00000584684 PABPN1Q86U42 306 aaKnown RBP eCLIP26.61■■□□□ 1.85
ERBB2-220ENST00000584684 SHROOM4Q9ULL8 1493 aa26.53■■□□□ 1.84
ERBB2-220ENST00000584684 SCRIBQ14160 1630 aa26.5■■□□□ 1.83
ERBB2-220ENST00000584684 DNAJC5BQ9UF47 199 aa26.43■■□□□ 1.82
ERBB2-220ENST00000584684 EIF4G1Q04637 1599 aaKnown RBP26.02■■□□□ 1.76
ERBB2-220ENST00000584684 CC2D2AQ9P2K1 1620 aa25.95■■□□□ 1.74
ERBB2-220ENST00000584684 CECR2Q9BXF3 1484 aa25.79■■□□□ 1.72
ERBB2-220ENST00000584684 SMARCA4P51532 1647 aa25.38■■□□□ 1.65
ERBB2-220ENST00000584684 NCAPD3P42695 1498 aa25.32■■□□□ 1.64
ERBB2-220ENST00000584684 BAZ1AQ9NRL2 1556 aaPredicted RBP25.31■■□□□ 1.64
ERBB2-220ENST00000584684 SMARCA2P51531 1590 aa25.27■■□□□ 1.64
ERBB2-220ENST00000584684 ATAD2BQ9ULI0 1458 aa25.27■■□□□ 1.64
ERBB2-220ENST00000584684 HMGXB3Q12766 1538 aa25.22■■□□□ 1.63
ERBB2-220ENST00000584684 PEG3Q9GZU2 1588 aa25.2■■□□□ 1.62
ERBB2-220ENST00000584684 MROH2BQ7Z745 1585 aa25.1■■□□□ 1.61
ERBB2-220ENST00000584684 BAZ1BQ9UIG0 1483 aaKnown RBP25.04■■□□□ 1.6
ERBB2-220ENST00000584684 WIZO95785 1651 aa24.81■■□□□ 1.56
ERBB2-220ENST00000584684 LAMC3Q9Y6N6 1575 aa24.71■■□□□ 1.55
ERBB2-220ENST00000584684 RSF1Q96T23 1441 aaPredicted RBP24.71■■□□□ 1.55
ERBB2-220ENST00000584684 NESP48681 1621 aa24.71■■□□□ 1.55
ERBB2-220ENST00000584684 ERCC6Q03468 1493 aa24.7■■□□□ 1.55
ERBB2-220ENST00000584684 CUX2O14529 1486 aa24.63■■□□□ 1.53
ERBB2-220ENST00000584684 TOP2AP11388 1531 aaKnown RBP24.6■■□□□ 1.53
ERBB2-220ENST00000584684 CADPSQ9ULU8 1353 aa24.52■■□□□ 1.52
ERBB2-220ENST00000584684 THOC2Q8NI27 1593 aaKnown RBP24.5■■□□□ 1.51
ERBB2-220ENST00000584684 PDS5BQ9NTI5 1447 aa24.49■■□□□ 1.51
ERBB2-220ENST00000584684 KIF21AQ7Z4S6 1674 aa24.47■■□□□ 1.51
ERBB2-220ENST00000584684 CFTRP13569 1480 aa24.37■■□□□ 1.49
ERBB2-220ENST00000584684 MRC2Q9UBG0 1479 aa24.28■■□□□ 1.48
ERBB2-220ENST00000584684 CEP164Q9UPV0 1460 aa24.26■■□□□ 1.47
ERBB2-220ENST00000584684 WDR62O43379 1518 aa24.25■■□□□ 1.47
ERBB2-220ENST00000584684 FANCD2Q9BXW9 1451 aa24.25■■□□□ 1.47
ERBB2-220ENST00000584684 PRDM2Q13029 1718 aa24.24■■□□□ 1.47
ERBB2-220ENST00000584684 CCDC88BA6NC98 1476 aa24.23■■□□□ 1.47
ERBB2-220ENST00000584684 DNAJC5Q9H3Z4 198 aa24.04■■□□□ 1.44
ERBB2-220ENST00000584684 URB2Q14146 1524 aaKnown RBP24.03■■□□□ 1.44
ERBB2-220ENST00000584684 ABCC8Q09428 1581 aa23.86■■□□□ 1.41
ERBB2-220ENST00000584684 TOPBP1Q92547 1522 aa23.84■■□□□ 1.41
ERBB2-220ENST00000584684 DNMBPQ6XZF7 1577 aa23.83■■□□□ 1.41
ERBB2-220ENST00000584684 IFT140Q96RY7 1462 aa23.77■■□□□ 1.4
ERBB2-220ENST00000584684 SUPT5HO00267 1087 aaKnown RBP23.72■■□□□ 1.39
ERBB2-220ENST00000584684 TARBP1Q13395 1621 aaKnown RBP23.65■■□□□ 1.38
ERBB2-220ENST00000584684 POLA1P09884 1462 aaPredicted RBP23.63■■□□□ 1.37
ERBB2-220ENST00000584684 ZNF608Q9ULD9 1512 aaPredicted RBP23.63■■□□□ 1.37
ERBB2-220ENST00000584684 EIF4G3O43432 1585 aaKnown RBP23.61■■□□□ 1.37
ERBB2-220ENST00000584684 CUX1P39880 1505 aa23.57■■□□□ 1.36
ERBB2-220ENST00000584684 WDR97A6NE52 1622 aa23.52■■□□□ 1.36
ERBB2-220ENST00000584684 FGD5Q6ZNL6 1462 aa23.52■■□□□ 1.36
ERBB2-220ENST00000584684 SOGA1O94964 1423 aa23.47■■□□□ 1.35
ERBB2-220ENST00000584684 RAD54L2Q9Y4B4 1467 aa23.46■■□□□ 1.35
ERBB2-220ENST00000584684 AQRO60306 1485 aaKnown RBP eCLIP23.43■■□□□ 1.34
ERBB2-220ENST00000584684 OSCARQ8IYS5 282 aa23.42■■□□□ 1.34
ERBB2-220ENST00000584684 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
ERBB2-220ENST00000584684 TOP2BQ02880 1626 aa23.35■■□□□ 1.33
ERBB2-220ENST00000584684 CHD1O14646 1710 aa23.33■■□□□ 1.33
ERBB2-220ENST00000584684 TDRD9Q8NDG6 1382 aaKnown RBP23.33■■□□□ 1.33
ERBB2-220ENST00000584684 ABCA10Q8WWZ4 1543 aa23.32■■□□□ 1.32
ERBB2-220ENST00000584684 WRNQ14191 1432 aaPredicted RBP eCLIP23.31■■□□□ 1.32
ERBB2-220ENST00000584684 SYNJ1O43426 1573 aa23.29■■□□□ 1.32
ERBB2-220ENST00000584684 ABCA5Q8WWZ7 1642 aa23.29■■□□□ 1.32
ERBB2-220ENST00000584684 GRIN2BQ13224 1484 aa23.28■■□□□ 1.32
ERBB2-220ENST00000584684 MAGI1Q96QZ7 1491 aaPredicted RBP23.28■■□□□ 1.32
ERBB2-220ENST00000584684 SNAPC4Q5SXM2 1469 aa23.26■■□□□ 1.31
ERBB2-220ENST00000584684 PBRM1Q86U86 1689 aa23.25■■□□□ 1.31
ERBB2-220ENST00000584684 GAPVD1Q14C86 1478 aa23.23■■□□□ 1.31
ERBB2-220ENST00000584684 SYNJ2O15056 1496 aa23.17■■□□□ 1.3
ERBB2-220ENST00000584684 RIMBP3CA6NJZ7 1639 aa23.17■■□□□ 1.3
ERBB2-220ENST00000584684 RIMBP3BA6NNM3 1639 aa23.17■■□□□ 1.3
ERBB2-220ENST00000584684 RIMBP3Q9UFD9 1639 aa23.17■■□□□ 1.3
ERBB2-220ENST00000584684 ARHGEF11O15085 1522 aa23.14■■□□□ 1.3
ERBB2-220ENST00000584684 CLASP1Q7Z460 1538 aa23.11■■□□□ 1.29
ERBB2-220ENST00000584684 FBLN2P98095 1184 aa23.1■■□□□ 1.29
ERBB2-220ENST00000584684 ADAMTS12P58397 1594 aa23.07■■□□□ 1.28
ERBB2-220ENST00000584684 CHMP7Q8WUX9 453 aaPredicted RBP23.06■■□□□ 1.28
ERBB2-220ENST00000584684 ERICH3Q5RHP9 1530 aa23.05■■□□□ 1.28
ERBB2-220ENST00000584684 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
ERBB2-220ENST00000584684 GRIN2AQ12879 1464 aa22.99■■□□□ 1.27
ERBB2-220ENST00000584684 FHAD1B1AJZ9 1412 aa22.97■■□□□ 1.27
ERBB2-220ENST00000584684 ARAP1Q96P48 1450 aa22.93■■□□□ 1.26
ERBB2-220ENST00000584684 NUP160Q12769 1436 aa22.91■■□□□ 1.26
ERBB2-220ENST00000584684 CEP170Q5SW79 1584 aa22.89■■□□□ 1.26
ERBB2-220ENST00000584684 KIF27Q86VH2 1401 aa22.84■■□□□ 1.25
ERBB2-220ENST00000584684 SHROOM2Q13796 1616 aa22.82■■□□□ 1.24
ERBB2-220ENST00000584684 CUL7Q14999 1698 aa22.81■■□□□ 1.24
ERBB2-220ENST00000584684 CYB5RLQ6IPT4 315 aa22.79■■□□□ 1.24
ERBB2-220ENST00000584684 RUSC2Q8N2Y8 1516 aa22.75■■□□□ 1.23
ERBB2-220ENST00000584684 IGF1RP08069 1367 aa22.75■■□□□ 1.23
ERBB2-220ENST00000584684 ERCC6L2Q5T890 1561 aa22.69■■□□□ 1.22
ERBB2-220ENST00000584684 KIAA0586Q9BVV6 1533 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 238.5 ms