RNA–Protein interactions for RNA: ENST00000584550.1

GGA3-219, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 5

Gene GGA3, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-219ENST00000584550 NISCHQ9Y2I1 1504 aa25.99■■□□□ 1.75
GGA3-219ENST00000584550 ABCC9O60706 1549 aa24.07■■□□□ 1.44
GGA3-219ENST00000584550 CCDC180Q9P1Z9 1646 aa23.47■■□□□ 1.35
GGA3-219ENST00000584550 DNAJC5BQ9UF47 199 aa23.04■■□□□ 1.28
GGA3-219ENST00000584550 RB1CC1Q8TDY2 1594 aa22.61■■□□□ 1.21
GGA3-219ENST00000584550 PABPN1Q86U42 306 aaKnown RBP eCLIP22.4■■□□□ 1.18
GGA3-219ENST00000584550 DCAF8L2P0C7V8 631 aa22.35■■□□□ 1.17
GGA3-219ENST00000584550 NACADO15069 1562 aa22.32■■□□□ 1.16
GGA3-219ENST00000584550 UNC13AQ9UPW8 1703 aa22.15■■□□□ 1.14
GGA3-219ENST00000584550 BICRAQ9NZM4 1560 aa21.99■■□□□ 1.11
GGA3-219ENST00000584550 MYO15BQ96JP2 1530 aa21.78■■□□□ 1.08
GGA3-219ENST00000584550 CECR2Q9BXF3 1484 aa21.7■■□□□ 1.06
GGA3-219ENST00000584550 CC2D2AQ9P2K1 1620 aa21.68■■□□□ 1.06
GGA3-219ENST00000584550 SHROOM4Q9ULL8 1493 aa21.51■■□□□ 1.03
GGA3-219ENST00000584550 EIF4G1Q04637 1599 aaKnown RBP21.49■■□□□ 1.03
GGA3-219ENST00000584550 SCRIBQ14160 1630 aa21.48■■□□□ 1.03
GGA3-219ENST00000584550 DNAJC5Q9H3Z4 198 aa21.43■■□□□ 1.02
GGA3-219ENST00000584550 ZCCHC6Q5VYS8 1495 aaKnown RBP21.41■■□□□ 1.02
GGA3-219ENST00000584550 DCAF1Q9Y4B6 1507 aa21.35■■□□□ 1.01
GGA3-219ENST00000584550 CUX2O14529 1486 aa20.82■□□□□ 0.92
GGA3-219ENST00000584550 ERCC6Q03468 1493 aa20.8■□□□□ 0.92
GGA3-219ENST00000584550 NCAPD3P42695 1498 aa20.62■□□□□ 0.89
GGA3-219ENST00000584550 NESP48681 1621 aa20.55■□□□□ 0.88
GGA3-219ENST00000584550 ATAD2BQ9ULI0 1458 aa20.52■□□□□ 0.88
GGA3-219ENST00000584550 TRIM41Q8WV44 630 aa20.41■□□□□ 0.86
GGA3-219ENST00000584550 SMARCA2P51531 1590 aa20.4■□□□□ 0.86
GGA3-219ENST00000584550 HMGXB3Q12766 1538 aa20.39■□□□□ 0.85
GGA3-219ENST00000584550 SMARCA4P51532 1647 aa20.38■□□□□ 0.85
GGA3-219ENST00000584550 THOC2Q8NI27 1593 aaKnown RBP20.35■□□□□ 0.85
GGA3-219ENST00000584550 BAZ1BQ9UIG0 1483 aaKnown RBP20.31■□□□□ 0.84
GGA3-219ENST00000584550 KIF21AQ7Z4S6 1674 aa20.24■□□□□ 0.83
GGA3-219ENST00000584550 LAMC3Q9Y6N6 1575 aa20.23■□□□□ 0.83
GGA3-219ENST00000584550 BAZ1AQ9NRL2 1556 aaPredicted RBP20.19■□□□□ 0.82
GGA3-219ENST00000584550 PDS5BQ9NTI5 1447 aa20.16■□□□□ 0.82
GGA3-219ENST00000584550 PEG3Q9GZU2 1588 aa20.12■□□□□ 0.81
GGA3-219ENST00000584550 MROH2BQ7Z745 1585 aa20.07■□□□□ 0.8
GGA3-219ENST00000584550 MRC2Q9UBG0 1479 aa20■□□□□ 0.79
GGA3-219ENST00000584550 CADPSQ9ULU8 1353 aa20■□□□□ 0.79
GGA3-219ENST00000584550 WDR62O43379 1518 aa19.96■□□□□ 0.79
GGA3-219ENST00000584550 OSCARQ8IYS5 282 aa19.89■□□□□ 0.77
GGA3-219ENST00000584550 CEP164Q9UPV0 1460 aa19.84■□□□□ 0.77
GGA3-219ENST00000584550 WIZO95785 1651 aa19.83■□□□□ 0.76
GGA3-219ENST00000584550 FANCD2Q9BXW9 1451 aa19.79■□□□□ 0.76
GGA3-219ENST00000584550 URB2Q14146 1524 aaKnown RBP19.66■□□□□ 0.74
GGA3-219ENST00000584550 RIMBP3CA6NJZ7 1639 aa19.66■□□□□ 0.74
GGA3-219ENST00000584550 RIMBP3BA6NNM3 1639 aa19.66■□□□□ 0.74
GGA3-219ENST00000584550 RIMBP3Q9UFD9 1639 aa19.66■□□□□ 0.74
GGA3-219ENST00000584550 CFTRP13569 1480 aa19.66■□□□□ 0.74
GGA3-219ENST00000584550 ARHGEF11O15085 1522 aa19.54■□□□□ 0.72
GGA3-219ENST00000584550 ZNF608Q9ULD9 1512 aaPredicted RBP19.53■□□□□ 0.72
GGA3-219ENST00000584550 CYB5RLQ6IPT4 315 aa19.52■□□□□ 0.72
GGA3-219ENST00000584550 TRHP20396 242 aaPredicted RBP19.48■□□□□ 0.71
GGA3-219ENST00000584550 TOP2AP11388 1531 aaKnown RBP19.47■□□□□ 0.71
GGA3-219ENST00000584550 RSF1Q96T23 1441 aaPredicted RBP19.47■□□□□ 0.71
GGA3-219ENST00000584550 IFT140Q96RY7 1462 aa19.44■□□□□ 0.7
GGA3-219ENST00000584550 PRDM2Q13029 1718 aa19.41■□□□□ 0.7
GGA3-219ENST00000584550 TOPBP1Q92547 1522 aa19.36■□□□□ 0.69
GGA3-219ENST00000584550 EIF4G3O43432 1585 aaKnown RBP19.36■□□□□ 0.69
GGA3-219ENST00000584550 FBLN2P98095 1184 aa19.35■□□□□ 0.69
GGA3-219ENST00000584550 CHD1O14646 1710 aa19.33■□□□□ 0.68
GGA3-219ENST00000584550 CCDC88BA6NC98 1476 aa19.31■□□□□ 0.68
GGA3-219ENST00000584550 AQRO60306 1485 aaKnown RBP eCLIP19.31■□□□□ 0.68
GGA3-219ENST00000584550 ARAP1Q96P48 1450 aa19.31■□□□□ 0.68
GGA3-219ENST00000584550 AEBP2Q6ZN18 517 aaPredicted RBP19.24■□□□□ 0.67
GGA3-219ENST00000584550 ABCC8Q09428 1581 aa19.23■□□□□ 0.67
GGA3-219ENST00000584550 DNMBPQ6XZF7 1577 aa19.23■□□□□ 0.67
GGA3-219ENST00000584550 TARBP1Q13395 1621 aaKnown RBP19.22■□□□□ 0.67
GGA3-219ENST00000584550 RAD54L2Q9Y4B4 1467 aa19.14■□□□□ 0.65
GGA3-219ENST00000584550 TDRD9Q8NDG6 1382 aaKnown RBP19.13■□□□□ 0.65
GGA3-219ENST00000584550 POLA1P09884 1462 aaPredicted RBP19.13■□□□□ 0.65
GGA3-219ENST00000584550 CHMP7Q8WUX9 453 aaPredicted RBP19.07■□□□□ 0.64
GGA3-219ENST00000584550 SOGA1O94964 1423 aa19.07■□□□□ 0.64
GGA3-219ENST00000584550 SNAPC4Q5SXM2 1469 aa19.06■□□□□ 0.64
GGA3-219ENST00000584550 CLASP1Q7Z460 1538 aa19.04■□□□□ 0.64
GGA3-219ENST00000584550 SYNJ1O43426 1573 aa19■□□□□ 0.63
GGA3-219ENST00000584550 FGD5Q6ZNL6 1462 aa18.97■□□□□ 0.63
GGA3-219ENST00000584550 MAGI1Q96QZ7 1491 aaPredicted RBP18.93■□□□□ 0.62
GGA3-219ENST00000584550 GRIN2BQ13224 1484 aa18.91■□□□□ 0.62
GGA3-219ENST00000584550 GAPVD1Q14C86 1478 aa18.91■□□□□ 0.62
GGA3-219ENST00000584550 SYNJ2O15056 1496 aa18.9■□□□□ 0.62
GGA3-219ENST00000584550 WDR97A6NE52 1622 aa18.89■□□□□ 0.61
GGA3-219ENST00000584550 CUX1P39880 1505 aa18.87■□□□□ 0.61
GGA3-219ENST00000584550 PBRM1Q86U86 1689 aa18.83■□□□□ 0.61
GGA3-219ENST00000584550 ERCC6L2Q5T890 1561 aa18.8■□□□□ 0.6
GGA3-219ENST00000584550 ABCA5Q8WWZ7 1642 aa18.69■□□□□ 0.58
GGA3-219ENST00000584550 GRIN2AQ12879 1464 aa18.68■□□□□ 0.58
GGA3-219ENST00000584550 ABCA10Q8WWZ4 1543 aa18.68■□□□□ 0.58
GGA3-219ENST00000584550 CEP170Q5SW79 1584 aa18.68■□□□□ 0.58
GGA3-219ENST00000584550 KIF13AQ9H1H9 1805 aa18.64■□□□□ 0.57
GGA3-219ENST00000584550 NUP160Q12769 1436 aa18.6■□□□□ 0.57
GGA3-219ENST00000584550 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
GGA3-219ENST00000584550 SHROOM2Q13796 1616 aa18.57■□□□□ 0.56
GGA3-219ENST00000584550 FAM69CQ0P6D2 419 aa18.55■□□□□ 0.56
GGA3-219ENST00000584550 WRNQ14191 1432 aaPredicted RBP eCLIP18.53■□□□□ 0.56
GGA3-219ENST00000584550 PRG4Q92954 1404 aaPredicted RBP18.53■□□□□ 0.56
GGA3-219ENST00000584550 FHAD1B1AJZ9 1412 aa18.52■□□□□ 0.56
GGA3-219ENST00000584550 JPH4Q96JJ6 628 aa18.5■□□□□ 0.55
GGA3-219ENST00000584550 NPM1P06748 294 aaKnown RBP eCLIP18.48■□□□□ 0.55
GGA3-219ENST00000584550 KDM4FA0A1W2PPD8 638 aa18.47■□□□□ 0.55
GGA3-219ENST00000584550 ABCC10Q5T3U5 1492 aa18.46■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms