RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 NISCHQ9Y2I1 1504 aa43.14■■■■■ 4.5
RFFL-211ENST00000584541 CCDC180Q9P1Z9 1646 aa38.14■■■■□ 3.7
RFFL-211ENST00000584541 ABCC9O60706 1549 aa36.59■■■■□ 3.45
RFFL-211ENST00000584541 ZCCHC6Q5VYS8 1495 aaKnown RBP36.07■■■■□ 3.37
RFFL-211ENST00000584541 DCAF8L2P0C7V8 631 aa35.8■■■■□ 3.32
RFFL-211ENST00000584541 DCAF1Q9Y4B6 1507 aa35.73■■■■□ 3.31
RFFL-211ENST00000584541 NACADO15069 1562 aa35.66■■■■□ 3.3
RFFL-211ENST00000584541 MYO15BQ96JP2 1530 aa35.63■■■■□ 3.29
RFFL-211ENST00000584541 RB1CC1Q8TDY2 1594 aa35.55■■■■□ 3.28
RFFL-211ENST00000584541 SCRIBQ14160 1630 aa34.83■■■■□ 3.17
RFFL-211ENST00000584541 UNC13AQ9UPW8 1703 aa34.8■■■■□ 3.16
RFFL-211ENST00000584541 SHROOM4Q9ULL8 1493 aa34.49■■■■□ 3.11
RFFL-211ENST00000584541 BICRAQ9NZM4 1560 aa34.38■■■■□ 3.09
RFFL-211ENST00000584541 PABPN1Q86U42 306 aaKnown RBP eCLIP34.28■■■■□ 3.08
RFFL-211ENST00000584541 CECR2Q9BXF3 1484 aa33.49■■■□□ 2.95
RFFL-211ENST00000584541 EIF4G1Q04637 1599 aaKnown RBP33.45■■■□□ 2.95
RFFL-211ENST00000584541 BAZ1AQ9NRL2 1556 aaPredicted RBP33.43■■■□□ 2.94
RFFL-211ENST00000584541 SMARCA4P51532 1647 aa33.36■■■□□ 2.93
RFFL-211ENST00000584541 DNAJC5BQ9UF47 199 aa33.35■■■□□ 2.93
RFFL-211ENST00000584541 MROH2BQ7Z745 1585 aa33.24■■■□□ 2.91
RFFL-211ENST00000584541 CC2D2AQ9P2K1 1620 aa33.17■■■□□ 2.9
RFFL-211ENST00000584541 RSF1Q96T23 1441 aaPredicted RBP33.09■■■□□ 2.89
RFFL-211ENST00000584541 SMARCA2P51531 1590 aa33.02■■■□□ 2.88
RFFL-211ENST00000584541 PEG3Q9GZU2 1588 aa33■■■□□ 2.87
RFFL-211ENST00000584541 WIZO95785 1651 aa32.97■■■□□ 2.87
RFFL-211ENST00000584541 ATAD2BQ9ULI0 1458 aa32.96■■■□□ 2.87
RFFL-211ENST00000584541 NCAPD3P42695 1498 aa32.84■■■□□ 2.85
RFFL-211ENST00000584541 SUPT5HO00267 1087 aaKnown RBP32.8■■■□□ 2.84
RFFL-211ENST00000584541 HMGXB3Q12766 1538 aa32.78■■■□□ 2.84
RFFL-211ENST00000584541 BAZ1BQ9UIG0 1483 aaKnown RBP32.78■■■□□ 2.84
RFFL-211ENST00000584541 TOP2AP11388 1531 aaKnown RBP32.65■■■□□ 2.82
RFFL-211ENST00000584541 CCDC88BA6NC98 1476 aa32.23■■■□□ 2.75
RFFL-211ENST00000584541 LAMC3Q9Y6N6 1575 aa31.94■■■□□ 2.7
RFFL-211ENST00000584541 CADPSQ9ULU8 1353 aa31.93■■■□□ 2.7
RFFL-211ENST00000584541 CFTRP13569 1480 aa31.88■■■□□ 2.69
RFFL-211ENST00000584541 PRDM2Q13029 1718 aa31.85■■■□□ 2.69
RFFL-211ENST00000584541 NESP48681 1621 aa31.84■■■□□ 2.69
RFFL-211ENST00000584541 PDS5BQ9NTI5 1447 aa31.67■■■□□ 2.66
RFFL-211ENST00000584541 FANCD2Q9BXW9 1451 aa31.59■■■□□ 2.65
RFFL-211ENST00000584541 KIF21AQ7Z4S6 1674 aa31.58■■■□□ 2.65
RFFL-211ENST00000584541 ERCC6Q03468 1493 aa31.54■■■□□ 2.64
RFFL-211ENST00000584541 DNAJC5Q9H3Z4 198 aa31.52■■■□□ 2.64
RFFL-211ENST00000584541 CEP164Q9UPV0 1460 aa31.51■■■□□ 2.63
RFFL-211ENST00000584541 MRC2Q9UBG0 1479 aa31.3■■■□□ 2.6
RFFL-211ENST00000584541 ABCC8Q09428 1581 aa31.28■■■□□ 2.6
RFFL-211ENST00000584541 THOC2Q8NI27 1593 aaKnown RBP31.26■■■□□ 2.6
RFFL-211ENST00000584541 WRNQ14191 1432 aaPredicted RBP eCLIP31.23■■■□□ 2.59
RFFL-211ENST00000584541 DNMBPQ6XZF7 1577 aa31.21■■■□□ 2.59
RFFL-211ENST00000584541 URB2Q14146 1524 aaKnown RBP31.2■■■□□ 2.59
RFFL-211ENST00000584541 WDR62O43379 1518 aa31.17■■■□□ 2.58
RFFL-211ENST00000584541 CUX1P39880 1505 aa31.15■■■□□ 2.58
RFFL-211ENST00000584541 TOPBP1Q92547 1522 aa31.15■■■□□ 2.58
RFFL-211ENST00000584541 BIVM-ERCC5R4GMW8 1640 aa31.12■■■□□ 2.57
RFFL-211ENST00000584541 SYNJ1O43426 1573 aa31.11■■■□□ 2.57
RFFL-211ENST00000584541 TOP2BQ02880 1626 aa31.1■■■□□ 2.57
RFFL-211ENST00000584541 CHIC1Q5VXU3 224 aa30.97■■■□□ 2.55
RFFL-211ENST00000584541 TRIM41Q8WV44 630 aa30.97■■■□□ 2.55
RFFL-211ENST00000584541 FGD5Q6ZNL6 1462 aa30.96■■■□□ 2.55
RFFL-211ENST00000584541 CUX2O14529 1486 aa30.94■■■□□ 2.54
RFFL-211ENST00000584541 POLA1P09884 1462 aaPredicted RBP30.92■■■□□ 2.54
RFFL-211ENST00000584541 SOGA1O94964 1423 aa30.82■■■□□ 2.52
RFFL-211ENST00000584541 IFT140Q96RY7 1462 aa30.8■■■□□ 2.52
RFFL-211ENST00000584541 RAD54L2Q9Y4B4 1467 aa30.77■■■□□ 2.52
RFFL-211ENST00000584541 TARBP1Q13395 1621 aaKnown RBP30.76■■■□□ 2.52
RFFL-211ENST00000584541 WDR97A6NE52 1622 aa30.72■■■□□ 2.51
RFFL-211ENST00000584541 ABCA10Q8WWZ4 1543 aa30.69■■■□□ 2.5
RFFL-211ENST00000584541 ZNF608Q9ULD9 1512 aaPredicted RBP30.56■■■□□ 2.48
RFFL-211ENST00000584541 EIF4G3O43432 1585 aaKnown RBP30.54■■■□□ 2.48
RFFL-211ENST00000584541 KIF27Q86VH2 1401 aa30.54■■■□□ 2.48
RFFL-211ENST00000584541 TDRD9Q8NDG6 1382 aaKnown RBP30.54■■■□□ 2.48
RFFL-211ENST00000584541 ABCA5Q8WWZ7 1642 aa30.53■■■□□ 2.48
RFFL-211ENST00000584541 GAPVD1Q14C86 1478 aa30.49■■■□□ 2.47
RFFL-211ENST00000584541 AQRO60306 1485 aaKnown RBP eCLIP30.48■■■□□ 2.475e-10■■■■■ 39.2
RFFL-211ENST00000584541 PBRM1Q86U86 1689 aa30.46■■■□□ 2.47
RFFL-211ENST00000584541 EEA1Q15075 1411 aa30.42■■■□□ 2.46
RFFL-211ENST00000584541 RUSC2Q8N2Y8 1516 aa30.4■■■□□ 2.46
RFFL-211ENST00000584541 GRIN2BQ13224 1484 aa30.39■■■□□ 2.46
RFFL-211ENST00000584541 ERICH3Q5RHP9 1530 aa30.36■■■□□ 2.45
RFFL-211ENST00000584541 FAM9AQ8IZU1 332 aaPredicted RBP30.29■■■□□ 2.44
RFFL-211ENST00000584541 IGF1RP08069 1367 aa30.27■■■□□ 2.44
RFFL-211ENST00000584541 CUL7Q14999 1698 aa30.27■■■□□ 2.44
RFFL-211ENST00000584541 MAGI1Q96QZ7 1491 aaPredicted RBP30.25■■■□□ 2.43
RFFL-211ENST00000584541 SNAPC4Q5SXM2 1469 aa30.25■■■□□ 2.43
RFFL-211ENST00000584541 CSRNP3Q8WYN3 585 aa30.24■■■□□ 2.43
RFFL-211ENST00000584541 ADAMTS12P58397 1594 aa30.2■■■□□ 2.42
RFFL-211ENST00000584541 FHAD1B1AJZ9 1412 aa30.15■■■□□ 2.42
RFFL-211ENST00000584541 CARMIL1Q5VZK9 1371 aa30.14■■■□□ 2.41
RFFL-211ENST00000584541 SYNJ2O15056 1496 aa30.12■■■□□ 2.41
RFFL-211ENST00000584541 CHD1O14646 1710 aa30.08■■■□□ 2.41
RFFL-211ENST00000584541 PRXQ9BXM0 1461 aa30.07■■■□□ 2.4
RFFL-211ENST00000584541 CHMP7Q8WUX9 453 aaPredicted RBP30.06■■■□□ 2.4
RFFL-211ENST00000584541 KIF21BO75037 1637 aa30.06■■■□□ 2.4
RFFL-211ENST00000584541 RAPGEF2Q9Y4G8 1499 aa30.06■■■□□ 2.4
RFFL-211ENST00000584541 FBLN2P98095 1184 aa30.04■■■□□ 2.4
RFFL-211ENST00000584541 GRIN2AQ12879 1464 aa29.99■■■□□ 2.39
RFFL-211ENST00000584541 GOLGA3Q08378 1498 aa29.93■■■□□ 2.38
RFFL-211ENST00000584541 EHMT2Q96KQ7 1210 aa29.85■■■□□ 2.37
RFFL-211ENST00000584541 CTTNBP2Q8WZ74 1663 aa29.83■■■□□ 2.37
RFFL-211ENST00000584541 CEP170Q5SW79 1584 aa29.81■■■□□ 2.36
RFFL-211ENST00000584541 NUP160Q12769 1436 aa29.8■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms