RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 NISCHQ9Y2I1 1504 aa50.01■■■■■ 5.6
SS18-224ENST00000584083 CCDC180Q9P1Z9 1646 aa44.61■■■■■ 4.73
SS18-224ENST00000584083 ABCC9O60706 1549 aa44■■■■■ 4.63
SS18-224ENST00000584083 RB1CC1Q8TDY2 1594 aa42.16■■■■■ 4.34
SS18-224ENST00000584083 DCAF8L2P0C7V8 631 aa42.06■■■■■ 4.32
SS18-224ENST00000584083 NACADO15069 1562 aa42.01■■■■■ 4.32
SS18-224ENST00000584083 MYO15BQ96JP2 1530 aa41.59■■■■■ 4.25
SS18-224ENST00000584083 ZCCHC6Q5VYS8 1495 aaKnown RBP41.56■■■■■ 4.24
SS18-224ENST00000584083 DCAF1Q9Y4B6 1507 aa41.32■■■■■ 4.2
SS18-224ENST00000584083 UNC13AQ9UPW8 1703 aa41.24■■■■■ 4.19
SS18-224ENST00000584083 PABPN1Q86U42 306 aaKnown RBP eCLIP41.09■■■■■ 4.17
SS18-224ENST00000584083 BICRAQ9NZM4 1560 aa40.87■■■■■ 4.13
SS18-224ENST00000584083 SCRIBQ14160 1630 aa40.72■■■■■ 4.11
SS18-224ENST00000584083 DNAJC5BQ9UF47 199 aa40.66■■■■■ 4.1
SS18-224ENST00000584083 SHROOM4Q9ULL8 1493 aa40.36■■■■■ 4.05
SS18-224ENST00000584083 EIF4G1Q04637 1599 aaKnown RBP39.83■■■■□ 3.97
SS18-224ENST00000584083 CC2D2AQ9P2K1 1620 aa39.77■■■■□ 3.96
SS18-224ENST00000584083 CECR2Q9BXF3 1484 aa39.56■■■■□ 3.92
SS18-224ENST00000584083 SMARCA4P51532 1647 aa38.89■■■■□ 3.82
SS18-224ENST00000584083 BAZ1AQ9NRL2 1556 aaPredicted RBP38.79■■■■□ 3.8
SS18-224ENST00000584083 NCAPD3P42695 1498 aa38.75■■■■□ 3.79
SS18-224ENST00000584083 ATAD2BQ9ULI0 1458 aa38.74■■■■□ 3.79
SS18-224ENST00000584083 SMARCA2P51531 1590 aa38.7■■■■□ 3.79
SS18-224ENST00000584083 MROH2BQ7Z745 1585 aa38.55■■■■□ 3.76
SS18-224ENST00000584083 HMGXB3Q12766 1538 aa38.53■■■■□ 3.76
SS18-224ENST00000584083 PEG3Q9GZU2 1588 aa38.45■■■■□ 3.75
SS18-224ENST00000584083 BAZ1BQ9UIG0 1483 aaKnown RBP38.44■■■■□ 3.74
SS18-224ENST00000584083 WIZO95785 1651 aa38.15■■■■□ 3.7
SS18-224ENST00000584083 RSF1Q96T23 1441 aaPredicted RBP37.98■■■■□ 3.67
SS18-224ENST00000584083 ERCC6Q03468 1493 aa37.97■■■■□ 3.67
SS18-224ENST00000584083 NESP48681 1621 aa37.97■■■■□ 3.67
SS18-224ENST00000584083 LAMC3Q9Y6N6 1575 aa37.81■■■■□ 3.64
SS18-224ENST00000584083 TOP2AP11388 1531 aaKnown RBP37.68■■■■□ 3.62
SS18-224ENST00000584083 CADPSQ9ULU8 1353 aa37.63■■■■□ 3.61
SS18-224ENST00000584083 CUX2O14529 1486 aa37.62■■■■□ 3.61
SS18-224ENST00000584083 PDS5BQ9NTI5 1447 aa37.58■■■■□ 3.61
SS18-224ENST00000584083 KIF21AQ7Z4S6 1674 aa37.53■■■■□ 3.6
SS18-224ENST00000584083 THOC2Q8NI27 1593 aaKnown RBP37.43■■■■□ 3.58
SS18-224ENST00000584083 CFTRP13569 1480 aa37.32■■■■□ 3.56
SS18-224ENST00000584083 CCDC88BA6NC98 1476 aa37.26■■■■□ 3.55
SS18-224ENST00000584083 FANCD2Q9BXW9 1451 aa37.21■■■■□ 3.55
SS18-224ENST00000584083 MRC2Q9UBG0 1479 aa37.2■■■■□ 3.55
SS18-224ENST00000584083 CEP164Q9UPV0 1460 aa37.2■■■■□ 3.55
SS18-224ENST00000584083 PRDM2Q13029 1718 aa37.07■■■■□ 3.53
SS18-224ENST00000584083 WDR62O43379 1518 aa37.07■■■■□ 3.53
SS18-224ENST00000584083 SUPT5HO00267 1087 aaKnown RBP36.89■■■■□ 3.5
SS18-224ENST00000584083 DNAJC5Q9H3Z4 198 aa36.88■■■■□ 3.49
SS18-224ENST00000584083 URB2Q14146 1524 aaKnown RBP36.85■■■■□ 3.49
SS18-224ENST00000584083 TOPBP1Q92547 1522 aa36.58■■■■□ 3.45
SS18-224ENST00000584083 ABCC8Q09428 1581 aa36.57■■■■□ 3.44
SS18-224ENST00000584083 DNMBPQ6XZF7 1577 aa36.51■■■■□ 3.44
SS18-224ENST00000584083 IFT140Q96RY7 1462 aa36.42■■■■□ 3.42
SS18-224ENST00000584083 ZNF608Q9ULD9 1512 aaPredicted RBP36.29■■■■□ 3.4
SS18-224ENST00000584083 POLA1P09884 1462 aaPredicted RBP36.24■■■■□ 3.39
SS18-224ENST00000584083 TARBP1Q13395 1621 aaKnown RBP36.19■■■■□ 3.38
SS18-224ENST00000584083 CUX1P39880 1505 aa36.18■■■■□ 3.38
SS18-224ENST00000584083 EIF4G3O43432 1585 aaKnown RBP36.14■■■■□ 3.38
SS18-224ENST00000584083 FGD5Q6ZNL6 1462 aa36.12■■■■□ 3.37
SS18-224ENST00000584083 SOGA1O94964 1423 aa36.12■■■■□ 3.37
SS18-224ENST00000584083 RAD54L2Q9Y4B4 1467 aa36.11■■■■□ 3.37
SS18-224ENST00000584083 OSCARQ8IYS5 282 aa36.07■■■■□ 3.36
SS18-224ENST00000584083 AQRO60306 1485 aaKnown RBP eCLIP36.06■■■■□ 3.36
SS18-224ENST00000584083 TDRD9Q8NDG6 1382 aaKnown RBP35.96■■■■□ 3.35
SS18-224ENST00000584083 WDR97A6NE52 1622 aa35.86■■■■□ 3.33
SS18-224ENST00000584083 WRNQ14191 1432 aaPredicted RBP eCLIP35.84■■■■□ 3.33
SS18-224ENST00000584083 CHD1O14646 1710 aa35.8■■■■□ 3.32
SS18-224ENST00000584083 TOP2BQ02880 1626 aa35.79■■■■□ 3.32
SS18-224ENST00000584083 BIVM-ERCC5R4GMW8 1640 aa35.79■■■■□ 3.32
SS18-224ENST00000584083 FBLN2P98095 1184 aa35.78■■■■□ 3.32
SS18-224ENST00000584083 SYNJ1O43426 1573 aa35.76■■■■□ 3.32
SS18-224ENST00000584083 ABCA10Q8WWZ4 1543 aa35.73■■■■□ 3.31
SS18-224ENST00000584083 GRIN2BQ13224 1484 aa35.72■■■■□ 3.31
SS18-224ENST00000584083 SNAPC4Q5SXM2 1469 aa35.72■■■■□ 3.31
SS18-224ENST00000584083 GAPVD1Q14C86 1478 aa35.69■■■■□ 3.3
SS18-224ENST00000584083 PBRM1Q86U86 1689 aa35.65■■■■□ 3.3
SS18-224ENST00000584083 MAGI1Q96QZ7 1491 aaPredicted RBP35.64■■■■□ 3.3
SS18-224ENST00000584083 ABCA5Q8WWZ7 1642 aa35.62■■■■□ 3.29
SS18-224ENST00000584083 TRIM41Q8WV44 630 aa35.61■■■■□ 3.29
SS18-224ENST00000584083 CHMP7Q8WUX9 453 aaPredicted RBP35.59■■■■□ 3.29
SS18-224ENST00000584083 SYNJ2O15056 1496 aa35.51■■■■□ 3.28
SS18-224ENST00000584083 RIMBP3CA6NJZ7 1639 aa35.5■■■■□ 3.27
SS18-224ENST00000584083 RIMBP3BA6NNM3 1639 aa35.5■■■■□ 3.27
SS18-224ENST00000584083 RIMBP3Q9UFD9 1639 aa35.5■■■■□ 3.27
SS18-224ENST00000584083 ARHGEF11O15085 1522 aa35.44■■■■□ 3.26
SS18-224ENST00000584083 CLASP1Q7Z460 1538 aa35.32■■■■□ 3.25
SS18-224ENST00000584083 ADAMTS12P58397 1594 aa35.31■■■■□ 3.24
SS18-224ENST00000584083 ERICH3Q5RHP9 1530 aa35.3■■■■□ 3.24
SS18-224ENST00000584083 GRIN2AQ12879 1464 aa35.25■■■■□ 3.23
SS18-224ENST00000584083 FHAD1B1AJZ9 1412 aa35.24■■■■□ 3.23
SS18-224ENST00000584083 CYB5RLQ6IPT4 315 aa35.2■■■■□ 3.23
SS18-224ENST00000584083 ARAP1Q96P48 1450 aa35.13■■■■□ 3.21
SS18-224ENST00000584083 KIF27Q86VH2 1401 aa35.13■■■■□ 3.21
SS18-224ENST00000584083 CEP170Q5SW79 1584 aa35.09■■■■□ 3.21
SS18-224ENST00000584083 NUP160Q12769 1436 aa35.07■■■■□ 3.21
SS18-224ENST00000584083 IGF1RP08069 1367 aa35■■■■□ 3.19
SS18-224ENST00000584083 CUL7Q14999 1698 aa34.95■■■■□ 3.18
SS18-224ENST00000584083 SHROOM2Q13796 1616 aa34.86■■■■□ 3.17
SS18-224ENST00000584083 ERCC6L2Q5T890 1561 aa34.85■■■■□ 3.17
SS18-224ENST00000584083 CARMIL1Q5VZK9 1371 aa34.81■■■■□ 3.16
SS18-224ENST00000584083 RUSC2Q8N2Y8 1516 aa34.8■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms