RNA–Protein interactions for RNA: ENST00000583741.1

SRSF1-206, Transcript of serine and arginine rich splicing factor 1, humanhuman

TSL 5

Gene SRSF1, Length 1,465 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1-206ENST00000583741 NISCHQ9Y2I1 1504 aa51.74■■■■■ 5.87
SRSF1-206ENST00000583741 ABCC9O60706 1549 aa46.79■■■■■ 5.08
SRSF1-206ENST00000583741 CCDC180Q9P1Z9 1646 aa46.56■■■■■ 5.04
SRSF1-206ENST00000583741 RB1CC1Q8TDY2 1594 aa44.41■■■■■ 4.7
SRSF1-206ENST00000583741 DNAJC5BQ9UF47 199 aa44.11■■■■■ 4.65
SRSF1-206ENST00000583741 NACADO15069 1562 aa44.04■■■■■ 4.64
SRSF1-206ENST00000583741 DCAF8L2P0C7V8 631 aa43.69■■■■■ 4.58
SRSF1-206ENST00000583741 UNC13AQ9UPW8 1703 aa43.52■■■■■ 4.56
SRSF1-206ENST00000583741 PABPN1Q86U42 306 aaKnown RBP eCLIP43.49■■■■■ 4.55
SRSF1-206ENST00000583741 MYO15BQ96JP2 1530 aa43.33■■■■■ 4.53
SRSF1-206ENST00000583741 BICRAQ9NZM4 1560 aa43.19■■■■■ 4.5
SRSF1-206ENST00000583741 ZCCHC6Q5VYS8 1495 aaKnown RBP42.84■■■■■ 4.45
SRSF1-206ENST00000583741 DCAF1Q9Y4B6 1507 aa42.7■■■■■ 4.43
SRSF1-206ENST00000583741 SHROOM4Q9ULL8 1493 aa42.49■■■■■ 4.39
SRSF1-206ENST00000583741 SCRIBQ14160 1630 aa42.43■■■■■ 4.38
SRSF1-206ENST00000583741 CC2D2AQ9P2K1 1620 aa42.27■■■■■ 4.36
SRSF1-206ENST00000583741 CECR2Q9BXF3 1484 aa42.16■■■■■ 4.34
SRSF1-206ENST00000583741 EIF4G1Q04637 1599 aaKnown RBP42.12■■■■■ 4.33
SRSF1-206ENST00000583741 NCAPD3P42695 1498 aa40.65■■■■■ 4.1
SRSF1-206ENST00000583741 DNAJC5Q9H3Z4 198 aa40.62■■■■■ 4.09
SRSF1-206ENST00000583741 ATAD2BQ9ULI0 1458 aa40.51■■■■■ 4.08
SRSF1-206ENST00000583741 SMARCA4P51532 1647 aa40.44■■■■■ 4.06
SRSF1-206ENST00000583741 CUX2O14529 1486 aa40.39■■■■■ 4.06
SRSF1-206ENST00000583741 ERCC6Q03468 1493 aa40.37■■■■■ 4.05
SRSF1-206ENST00000583741 SMARCA2P51531 1590 aa40.37■■■■■ 4.05
SRSF1-206ENST00000583741 HMGXB3Q12766 1538 aa40.36■■■■■ 4.05
SRSF1-206ENST00000583741 BAZ1AQ9NRL2 1556 aaPredicted RBP40.17■■■■■ 4.02
SRSF1-206ENST00000583741 NESP48681 1621 aa40.15■■■■■ 4.02
SRSF1-206ENST00000583741 BAZ1BQ9UIG0 1483 aaKnown RBP40.1■■■■■ 4.01
SRSF1-206ENST00000583741 PEG3Q9GZU2 1588 aa40.04■■■■■ 4
SRSF1-206ENST00000583741 MROH2BQ7Z745 1585 aa39.89■■■■□ 3.98
SRSF1-206ENST00000583741 THOC2Q8NI27 1593 aaKnown RBP39.82■■■■□ 3.96
SRSF1-206ENST00000583741 LAMC3Q9Y6N6 1575 aa39.8■■■■□ 3.96
SRSF1-206ENST00000583741 KIF21AQ7Z4S6 1674 aa39.66■■■■□ 3.94
SRSF1-206ENST00000583741 PDS5BQ9NTI5 1447 aa39.52■■■■□ 3.92
SRSF1-206ENST00000583741 WIZO95785 1651 aa39.42■■■■□ 3.9
SRSF1-206ENST00000583741 CADPSQ9ULU8 1353 aa39.39■■■■□ 3.9
SRSF1-206ENST00000583741 MRC2Q9UBG0 1479 aa39.24■■■■□ 3.87
SRSF1-206ENST00000583741 WDR62O43379 1518 aa39.18■■■■□ 3.86
SRSF1-206ENST00000583741 CEP164Q9UPV0 1460 aa39.03■■■■□ 3.84
SRSF1-206ENST00000583741 FANCD2Q9BXW9 1451 aa38.97■■■■□ 3.83
SRSF1-206ENST00000583741 RSF1Q96T23 1441 aaPredicted RBP38.94■■■■□ 3.82
SRSF1-206ENST00000583741 CFTRP13569 1480 aa38.91■■■■□ 3.82
SRSF1-206ENST00000583741 TOP2AP11388 1531 aaKnown RBP38.87■■■■□ 3.81
SRSF1-206ENST00000583741 TRIM41Q8WV44 630 aa38.75■■■■□ 3.79
SRSF1-206ENST00000583741 URB2Q14146 1524 aaKnown RBP38.7■■■■□ 3.79
SRSF1-206ENST00000583741 PRDM2Q13029 1718 aa38.58■■■■□ 3.77
SRSF1-206ENST00000583741 OSCARQ8IYS5 282 aa38.44■■■■□ 3.74
SRSF1-206ENST00000583741 CCDC88BA6NC98 1476 aa38.42■■■■□ 3.74
SRSF1-206ENST00000583741 ZNF608Q9ULD9 1512 aaPredicted RBP38.27■■■■□ 3.72
SRSF1-206ENST00000583741 IFT140Q96RY7 1462 aa38.24■■■■□ 3.71
SRSF1-206ENST00000583741 TOPBP1Q92547 1522 aa38.22■■■■□ 3.71
SRSF1-206ENST00000583741 RIMBP3CA6NJZ7 1639 aa38.1■■■■□ 3.69
SRSF1-206ENST00000583741 RIMBP3BA6NNM3 1639 aa38.1■■■■□ 3.69
SRSF1-206ENST00000583741 RIMBP3Q9UFD9 1639 aa38.1■■■■□ 3.69
SRSF1-206ENST00000583741 EIF4G3O43432 1585 aaKnown RBP38.07■■■■□ 3.68
SRSF1-206ENST00000583741 DNMBPQ6XZF7 1577 aa38.06■■■■□ 3.68
SRSF1-206ENST00000583741 ABCC8Q09428 1581 aa38.05■■■■□ 3.68
SRSF1-206ENST00000583741 TARBP1Q13395 1621 aaKnown RBP37.94■■■■□ 3.66
SRSF1-206ENST00000583741 ARHGEF11O15085 1522 aa37.93■■■■□ 3.66
SRSF1-206ENST00000583741 AQRO60306 1485 aaKnown RBP eCLIP37.86■■■■□ 3.657e-10■■■■■ 31
SRSF1-206ENST00000583741 CHD1O14646 1710 aa37.84■■■■□ 3.65
SRSF1-206ENST00000583741 POLA1P09884 1462 aaPredicted RBP37.82■■■■□ 3.65
SRSF1-206ENST00000583741 RAD54L2Q9Y4B4 1467 aa37.69■■■■□ 3.62
SRSF1-206ENST00000583741 FBLN2P98095 1184 aa37.6■■■■□ 3.61
SRSF1-206ENST00000583741 CYB5RLQ6IPT4 315 aa37.59■■■■□ 3.61
SRSF1-206ENST00000583741 SOGA1O94964 1423 aa37.59■■■■□ 3.61
SRSF1-206ENST00000583741 TDRD9Q8NDG6 1382 aaKnown RBP37.58■■■■□ 3.61
SRSF1-206ENST00000583741 FGD5Q6ZNL6 1462 aa37.55■■■■□ 3.6
SRSF1-206ENST00000583741 ARAP1Q96P48 1450 aa37.55■■■■□ 3.6
SRSF1-206ENST00000583741 CUX1P39880 1505 aa37.49■■■■□ 3.59
SRSF1-206ENST00000583741 WDR97A6NE52 1622 aa37.47■■■■□ 3.59
SRSF1-206ENST00000583741 SNAPC4Q5SXM2 1469 aa37.47■■■■□ 3.59
SRSF1-206ENST00000583741 CLASP1Q7Z460 1538 aa37.38■■■■□ 3.57
SRSF1-206ENST00000583741 MAGI1Q96QZ7 1491 aaPredicted RBP37.34■■■■□ 3.57
SRSF1-206ENST00000583741 GRIN2BQ13224 1484 aa37.31■■■■□ 3.56
SRSF1-206ENST00000583741 SYNJ1O43426 1573 aa37.29■■■■□ 3.56
SRSF1-206ENST00000583741 CHMP7Q8WUX9 453 aaPredicted RBP37.26■■■■□ 3.56
SRSF1-206ENST00000583741 TRHP20396 242 aaPredicted RBP37.23■■■■□ 3.55
SRSF1-206ENST00000583741 PBRM1Q86U86 1689 aa37.23■■■■□ 3.55
SRSF1-206ENST00000583741 SYNJ2O15056 1496 aa37.23■■■■□ 3.55
SRSF1-206ENST00000583741 GAPVD1Q14C86 1478 aa37.15■■■■□ 3.54
SRSF1-206ENST00000583741 ABCA5Q8WWZ7 1642 aa37.11■■■■□ 3.53
SRSF1-206ENST00000583741 ABCA10Q8WWZ4 1543 aa37.1■■■■□ 3.53
SRSF1-206ENST00000583741 SUPT5HO00267 1087 aaKnown RBP36.99■■■■□ 3.51
SRSF1-206ENST00000583741 GRIN2AQ12879 1464 aa36.86■■■■□ 3.49
SRSF1-206ENST00000583741 WRNQ14191 1432 aaPredicted RBP eCLIP36.85■■■■□ 3.49
SRSF1-206ENST00000583741 ADAMTS12P58397 1594 aa36.84■■■■□ 3.49
SRSF1-206ENST00000583741 BIVM-ERCC5R4GMW8 1640 aa36.84■■■■□ 3.49
SRSF1-206ENST00000583741 TOP2BQ02880 1626 aa36.82■■■■□ 3.48
SRSF1-206ENST00000583741 ERCC6L2Q5T890 1561 aa36.81■■■■□ 3.48
SRSF1-206ENST00000583741 CEP170Q5SW79 1584 aa36.77■■■■□ 3.48
SRSF1-206ENST00000583741 NUP160Q12769 1436 aa36.74■■■■□ 3.47
SRSF1-206ENST00000583741 FHAD1B1AJZ9 1412 aa36.65■■■■□ 3.46
SRSF1-206ENST00000583741 SHROOM2Q13796 1616 aa36.64■■■■□ 3.46
SRSF1-206ENST00000583741 ERICH3Q5RHP9 1530 aa36.61■■■■□ 3.45
SRSF1-206ENST00000583741 PRG4Q92954 1404 aaPredicted RBP36.39■■■■□ 3.42
SRSF1-206ENST00000583741 RUSC2Q8N2Y8 1516 aa36.34■■■■□ 3.41
SRSF1-206ENST00000583741 KIF13AQ9H1H9 1805 aa36.32■■■■□ 3.4
SRSF1-206ENST00000583741 JPH4Q96JJ6 628 aa36.3■■■■□ 3.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms