RNA–Protein interactions for RNA: ENST00000583514.5

LLGL2-221, Transcript of LLGL2, scribble cell polarity complex component, human

TSL 3

Gene LLGL2, Length 409 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LLGL2-221	ENST00000583514	NISCH	Q9Y2I1	1504 aa		38.63	■■■■□ 3.78
LLGL2-221	ENST00000583514	ABCC9	O60706	1549 aa		34.55	■■■■□ 3.12
LLGL2-221	ENST00000583514	CCDC180	Q9P1Z9	1646 aa		34.52	■■■■□ 3.12
LLGL2-221	ENST00000583514	RB1CC1	Q8TDY2	1594 aa		32.87	■■■□□ 2.85
LLGL2-221	ENST00000583514	DCAF8L2	P0C7V8	631 aa		32.7	■■■□□ 2.83
LLGL2-221	ENST00000583514	NACAD	O15069	1562 aa		32.67	■■■□□ 2.82
LLGL2-221	ENST00000583514	DNAJC5B	Q9UF47	199 aa		32.37	■■■□□ 2.77
LLGL2-221	ENST00000583514	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.26	■■■□□ 2.75	3e-7	■■■□□ 17.8
LLGL2-221	ENST00000583514	MYO15B	Q96JP2	1530 aa		32.25	■■■□□ 2.75
LLGL2-221	ENST00000583514	UNC13A	Q9UPW8	1703 aa		32.03	■■■□□ 2.72
LLGL2-221	ENST00000583514	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.03	■■■□□ 2.72
LLGL2-221	ENST00000583514	BICRA	Q9NZM4	1560 aa		31.91	■■■□□ 2.7
LLGL2-221	ENST00000583514	DCAF1	Q9Y4B6	1507 aa		31.88	■■■□□ 2.69
LLGL2-221	ENST00000583514	SCRIB	Q14160	1630 aa		31.55	■■■□□ 2.64
LLGL2-221	ENST00000583514	SHROOM4	Q9ULL8	1493 aa		31.46	■■■□□ 2.63
LLGL2-221	ENST00000583514	CC2D2A	Q9P2K1	1620 aa		31.16	■■■□□ 2.58
LLGL2-221	ENST00000583514	EIF4G1	Q04637	1599 aa	Known RBP	31.13	■■■□□ 2.57
LLGL2-221	ENST00000583514	CECR2	Q9BXF3	1484 aa		31.11	■■■□□ 2.57
LLGL2-221	ENST00000583514	NCAPD3	P42695	1498 aa		30.2	■■■□□ 2.43
LLGL2-221	ENST00000583514	ATAD2B	Q9ULI0	1458 aa		30.13	■■■□□ 2.41
LLGL2-221	ENST00000583514	SMARCA4	P51532	1647 aa		30.08	■■■□□ 2.41
LLGL2-221	ENST00000583514	SMARCA2	P51531	1590 aa		30.02	■■■□□ 2.4
LLGL2-221	ENST00000583514	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	29.96	■■■□□ 2.39
LLGL2-221	ENST00000583514	HMGXB3	Q12766	1538 aa		29.94	■■■□□ 2.38
LLGL2-221	ENST00000583514	BAZ1B	Q9UIG0	1483 aa	Known RBP	29.84	■■■□□ 2.37
LLGL2-221	ENST00000583514	ERCC6	Q03468	1493 aa		29.82	■■■□□ 2.36
LLGL2-221	ENST00000583514	MROH2B	Q7Z745	1585 aa		29.78	■■■□□ 2.36
LLGL2-221	ENST00000583514	PEG3	Q9GZU2	1588 aa		29.77	■■■□□ 2.36
LLGL2-221	ENST00000583514	NES	P48681	1621 aa		29.71	■■■□□ 2.35
LLGL2-221	ENST00000583514	CUX2	O14529	1486 aa		29.68	■■■□□ 2.34
LLGL2-221	ENST00000583514	DNAJC5	Q9H3Z4	198 aa		29.61	■■■□□ 2.33
LLGL2-221	ENST00000583514	LAMC3	Q9Y6N6	1575 aa		29.45	■■■□□ 2.31
LLGL2-221	ENST00000583514	WIZ	O95785	1651 aa		29.4	■■■□□ 2.3
LLGL2-221	ENST00000583514	PDS5B	Q9NTI5	1447 aa		29.35	■■■□□ 2.29
LLGL2-221	ENST00000583514	CADPS	Q9ULU8	1353 aa		29.32	■■■□□ 2.28
LLGL2-221	ENST00000583514	THOC2	Q8NI27	1593 aa	Known RBP	29.3	■■■□□ 2.28
LLGL2-221	ENST00000583514	KIF21A	Q7Z4S6	1674 aa		29.24	■■■□□ 2.27
LLGL2-221	ENST00000583514	RSF1	Q96T23	1441 aa	Predicted RBP	29.23	■■■□□ 2.27
LLGL2-221	ENST00000583514	MRC2	Q9UBG0	1479 aa		29.06	■■■□□ 2.24
LLGL2-221	ENST00000583514	TOP2A	P11388	1531 aa	Known RBP	29.04	■■■□□ 2.24
LLGL2-221	ENST00000583514	CFTR	P13569	1480 aa		28.98	■■■□□ 2.23
LLGL2-221	ENST00000583514	FANCD2	Q9BXW9	1451 aa		28.97	■■■□□ 2.23
LLGL2-221	ENST00000583514	CEP164	Q9UPV0	1460 aa		28.97	■■■□□ 2.23
LLGL2-221	ENST00000583514	WDR62	O43379	1518 aa		28.96	■■■□□ 2.23
LLGL2-221	ENST00000583514	CCDC88B	A6NC98	1476 aa		28.76	■■■□□ 2.19
LLGL2-221	ENST00000583514	URB2	Q14146	1524 aa	Known RBP	28.71	■■■□□ 2.19
LLGL2-221	ENST00000583514	PRDM2	Q13029	1718 aa		28.55	■■■□□ 2.16
LLGL2-221	ENST00000583514	OSCAR	Q8IYS5	282 aa		28.43	■■■□□ 2.14
LLGL2-221	ENST00000583514	TRIM41	Q8WV44	630 aa		28.41	■■■□□ 2.14
LLGL2-221	ENST00000583514	TOPBP1	Q92547	1522 aa		28.41	■■■□□ 2.14
LLGL2-221	ENST00000583514	IFT140	Q96RY7	1462 aa		28.4	■■■□□ 2.14
LLGL2-221	ENST00000583514	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.36	■■■□□ 2.13
LLGL2-221	ENST00000583514	ABCC8	Q09428	1581 aa		28.34	■■■□□ 2.13
LLGL2-221	ENST00000583514	DNMBP	Q6XZF7	1577 aa		28.29	■■■□□ 2.12
LLGL2-221	ENST00000583514	EIF4G3	O43432	1585 aa	Known RBP	28.15	■■■□□ 2.1
LLGL2-221	ENST00000583514	AQR	O60306	1485 aa	Known RBP eCLIP	28.15	■■■□□ 2.1	6e-7	■■■■□ 23.6
LLGL2-221	ENST00000583514	POLA1	P09884	1462 aa	Predicted RBP	28.15	■■■□□ 2.1
LLGL2-221	ENST00000583514	TARBP1	Q13395	1621 aa	Known RBP	28.12	■■■□□ 2.09
LLGL2-221	ENST00000583514	SUPT5H	O00267	1087 aa	Known RBP	28.12	■■■□□ 2.09
LLGL2-221	ENST00000583514	RAD54L2	Q9Y4B4	1467 aa		28.07	■■■□□ 2.08
LLGL2-221	ENST00000583514	SOGA1	O94964	1423 aa		28.05	■■■□□ 2.08
LLGL2-221	ENST00000583514	TDRD9	Q8NDG6	1382 aa	Known RBP	28	■■■□□ 2.07
LLGL2-221	ENST00000583514	FBLN2	P98095	1184 aa		27.99	■■■□□ 2.07
LLGL2-221	ENST00000583514	FGD5	Q6ZNL6	1462 aa		27.98	■■■□□ 2.07
LLGL2-221	ENST00000583514	CUX1	P39880	1505 aa		27.97	■■■□□ 2.07
LLGL2-221	ENST00000583514	RIMBP3C	A6NJZ7	1639 aa		27.96	■■■□□ 2.07
LLGL2-221	ENST00000583514	RIMBP3B	A6NNM3	1639 aa		27.96	■■■□□ 2.07
LLGL2-221	ENST00000583514	RIMBP3	Q9UFD9	1639 aa		27.96	■■■□□ 2.07
LLGL2-221	ENST00000583514	ARHGEF11	O15085	1522 aa		27.91	■■■□□ 2.06
LLGL2-221	ENST00000583514	CHD1	O14646	1710 aa		27.88	■■■□□ 2.05
LLGL2-221	ENST00000583514	SNAPC4	Q5SXM2	1469 aa		27.82	■■■□□ 2.04
LLGL2-221	ENST00000583514	WDR97	A6NE52	1622 aa		27.8	■■■□□ 2.04
LLGL2-221	ENST00000583514	CYB5RL	Q6IPT4	315 aa		27.79	■■■□□ 2.04
LLGL2-221	ENST00000583514	CHMP7	Q8WUX9	453 aa	Predicted RBP	27.78	■■■□□ 2.04
LLGL2-221	ENST00000583514	GRIN2B	Q13224	1484 aa		27.76	■■■□□ 2.04
LLGL2-221	ENST00000583514	MAGI1	Q96QZ7	1491 aa	Predicted RBP	27.73	■■■□□ 2.03
LLGL2-221	ENST00000583514	GAPVD1	Q14C86	1478 aa		27.69	■■■□□ 2.02
LLGL2-221	ENST00000583514	ABCA10	Q8WWZ4	1543 aa		27.66	■■■□□ 2.02
LLGL2-221	ENST00000583514	SYNJ2	O15056	1496 aa		27.65	■■■□□ 2.02
LLGL2-221	ENST00000583514	ARAP1	Q96P48	1450 aa		27.64	■■■□□ 2.02
LLGL2-221	ENST00000583514	CLASP1	Q7Z460	1538 aa		27.61	■■■□□ 2.01
LLGL2-221	ENST00000583514	SYNJ1	O43426	1573 aa		27.6	■■■□□ 2.01
LLGL2-221	ENST00000583514	WRN	Q14191	1432 aa	Predicted RBP eCLIP	27.6	■■■□□ 2.01
LLGL2-221	ENST00000583514	PBRM1	Q86U86	1689 aa		27.57	■■■□□ 2
LLGL2-221	ENST00000583514	ABCA5	Q8WWZ7	1642 aa		27.56	■■■□□ 2
LLGL2-221	ENST00000583514	TOP2B	Q02880	1626 aa		27.52	■■■□□ 2
LLGL2-221	ENST00000583514	BIVM-ERCC5	R4GMW8	1640 aa		27.49	■■□□□ 1.99
LLGL2-221	ENST00000583514	TRH	P20396	242 aa	Predicted RBP	27.44	■■□□□ 1.98
LLGL2-221	ENST00000583514	GRIN2A	Q12879	1464 aa		27.4	■■□□□ 1.98
LLGL2-221	ENST00000583514	ADAMTS12	P58397	1594 aa		27.35	■■□□□ 1.97
LLGL2-221	ENST00000583514	FHAD1	B1AJZ9	1412 aa		27.34	■■□□□ 1.97
LLGL2-221	ENST00000583514	NUP160	Q12769	1436 aa		27.3	■■□□□ 1.96
LLGL2-221	ENST00000583514	ERICH3	Q5RHP9	1530 aa		27.3	■■□□□ 1.96
LLGL2-221	ENST00000583514	CEP170	Q5SW79	1584 aa		27.27	■■□□□ 1.96
LLGL2-221	ENST00000583514	ERCC6L2	Q5T890	1561 aa		27.22	■■□□□ 1.95
LLGL2-221	ENST00000583514	SHROOM2	Q13796	1616 aa		27.11	■■□□□ 1.93
LLGL2-221	ENST00000583514	JPH4	Q96JJ6	628 aa		27.09	■■□□□ 1.93
LLGL2-221	ENST00000583514	PRG4	Q92954	1404 aa	Predicted RBP	27.07	■■□□□ 1.92
LLGL2-221	ENST00000583514	IGF1R	P08069	1367 aa		27.05	■■□□□ 1.92
LLGL2-221	ENST00000583514	KIF27	Q86VH2	1401 aa		27.05	■■□□□ 1.92

Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms