RNA–Protein interactions for RNA: ENST00000583454.1

TSEN54-209, Transcript of tRNA splicing endonuclease subunit 54, humanhuman

TSL 3

Gene TSEN54, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSEN54-209ENST00000583454 NISCHQ9Y2I1 1504 aa61.51■■■■■ 7.44
TSEN54-209ENST00000583454 CCDC180Q9P1Z9 1646 aa55.2■■■■■ 6.43
TSEN54-209ENST00000583454 ABCC9O60706 1549 aa54.91■■■■■ 6.38
TSEN54-209ENST00000583454 RB1CC1Q8TDY2 1594 aa52.37■■■■■ 5.97
TSEN54-209ENST00000583454 NACADO15069 1562 aa52.06■■■■■ 5.92
TSEN54-209ENST00000583454 DCAF8L2P0C7V8 631 aa51.56■■■■■ 5.84
TSEN54-209ENST00000583454 MYO15BQ96JP2 1530 aa51.45■■■■■ 5.83
TSEN54-209ENST00000583454 DNAJC5BQ9UF47 199 aa51.4■■■■■ 5.82
TSEN54-209ENST00000583454 UNC13AQ9UPW8 1703 aa51.38■■■■■ 5.82
TSEN54-209ENST00000583454 PABPN1Q86U42 306 aaKnown RBP eCLIP51.07■■■■■ 5.77
TSEN54-209ENST00000583454 ZCCHC6Q5VYS8 1495 aaKnown RBP51.04■■■■■ 5.76
TSEN54-209ENST00000583454 BICRAQ9NZM4 1560 aa50.97■■■■■ 5.75
TSEN54-209ENST00000583454 DCAF1Q9Y4B6 1507 aa50.85■■■■■ 5.73
TSEN54-209ENST00000583454 SCRIBQ14160 1630 aa50.23■■■■■ 5.63
TSEN54-209ENST00000583454 SHROOM4Q9ULL8 1493 aa50.2■■■■■ 5.63
TSEN54-209ENST00000583454 CC2D2AQ9P2K1 1620 aa49.68■■■■■ 5.54
TSEN54-209ENST00000583454 EIF4G1Q04637 1599 aaKnown RBP49.62■■■■■ 5.53
TSEN54-209ENST00000583454 CECR2Q9BXF3 1484 aa49.44■■■■■ 5.51
TSEN54-209ENST00000583454 NCAPD3P42695 1498 aa48.05■■■■■ 5.28
TSEN54-209ENST00000583454 SMARCA4P51532 1647 aa47.98■■■■■ 5.27
TSEN54-209ENST00000583454 ATAD2BQ9ULI0 1458 aa47.93■■■■■ 5.26
TSEN54-209ENST00000583454 SMARCA2P51531 1590 aa47.79■■■■■ 5.24
TSEN54-209ENST00000583454 HMGXB3Q12766 1538 aa47.76■■■■■ 5.24
TSEN54-209ENST00000583454 BAZ1AQ9NRL2 1556 aaPredicted RBP47.71■■■■■ 5.23
TSEN54-209ENST00000583454 PEG3Q9GZU2 1588 aa47.55■■■■■ 5.2
TSEN54-209ENST00000583454 BAZ1BQ9UIG0 1483 aaKnown RBP47.43■■■■■ 5.18
TSEN54-209ENST00000583454 MROH2BQ7Z745 1585 aa47.41■■■■■ 5.18
TSEN54-209ENST00000583454 ERCC6Q03468 1493 aa47.32■■■■■ 5.17
TSEN54-209ENST00000583454 CUX2O14529 1486 aa47.27■■■■■ 5.16
TSEN54-209ENST00000583454 NESP48681 1621 aa47.27■■■■■ 5.16
TSEN54-209ENST00000583454 DNAJC5Q9H3Z4 198 aa47.01■■■■■ 5.12
TSEN54-209ENST00000583454 LAMC3Q9Y6N6 1575 aa46.97■■■■■ 5.11
TSEN54-209ENST00000583454 WIZO95785 1651 aa46.87■■■■■ 5.09
TSEN54-209ENST00000583454 THOC2Q8NI27 1593 aaKnown RBP46.84■■■■■ 5.09
TSEN54-209ENST00000583454 KIF21AQ7Z4S6 1674 aa46.74■■■■■ 5.07
TSEN54-209ENST00000583454 PDS5BQ9NTI5 1447 aa46.59■■■■■ 5.05
TSEN54-209ENST00000583454 CADPSQ9ULU8 1353 aa46.55■■■■■ 5.04
TSEN54-209ENST00000583454 RSF1Q96T23 1441 aaPredicted RBP46.45■■■■■ 5.03
TSEN54-209ENST00000583454 TOP2AP11388 1531 aaKnown RBP46.26■■■■■ 5
TSEN54-209ENST00000583454 MRC2Q9UBG0 1479 aa46.24■■■■■ 4.99
TSEN54-209ENST00000583454 WDR62O43379 1518 aa46.18■■■■■ 4.98
TSEN54-209ENST00000583454 CFTRP13569 1480 aa46.11■■■■■ 4.97
TSEN54-209ENST00000583454 CEP164Q9UPV0 1460 aa46.07■■■■■ 4.97
TSEN54-209ENST00000583454 FANCD2Q9BXW9 1451 aa46.04■■■■■ 4.96
TSEN54-209ENST00000583454 PRDM2Q13029 1718 aa45.8■■■■■ 4.92
TSEN54-209ENST00000583454 URB2Q14146 1524 aaKnown RBP45.72■■■■■ 4.91
TSEN54-209ENST00000583454 CCDC88BA6NC98 1476 aa45.7■■■■■ 4.91
TSEN54-209ENST00000583454 TOPBP1Q92547 1522 aa45.23■■■■■ 4.83
TSEN54-209ENST00000583454 IFT140Q96RY7 1462 aa45.14■■■■■ 4.82
TSEN54-209ENST00000583454 ZNF608Q9ULD9 1512 aaPredicted RBP45.11■■■■■ 4.81
TSEN54-209ENST00000583454 DNMBPQ6XZF7 1577 aa45.09■■■■■ 4.81
TSEN54-209ENST00000583454 ABCC8Q09428 1581 aa45.07■■■■■ 4.8
TSEN54-209ENST00000583454 OSCARQ8IYS5 282 aa45.01■■■■■ 4.8
TSEN54-209ENST00000583454 EIF4G3O43432 1585 aaKnown RBP44.91■■■■■ 4.78
TSEN54-209ENST00000583454 TRIM41Q8WV44 630 aa44.91■■■■■ 4.78
TSEN54-209ENST00000583454 TARBP1Q13395 1621 aaKnown RBP44.9■■■■■ 4.78
TSEN54-209ENST00000583454 POLA1P09884 1462 aaPredicted RBP44.78■■■■■ 4.76
TSEN54-209ENST00000583454 SUPT5HO00267 1087 aaKnown RBP44.71■■■■■ 4.75
TSEN54-209ENST00000583454 AQRO60306 1485 aaKnown RBP eCLIP44.67■■■■■ 4.743e-6■■■■□ 24.7
TSEN54-209ENST00000583454 RIMBP3CA6NJZ7 1639 aa44.61■■■■■ 4.73
TSEN54-209ENST00000583454 RIMBP3BA6NNM3 1639 aa44.61■■■■■ 4.73
TSEN54-209ENST00000583454 RIMBP3Q9UFD9 1639 aa44.61■■■■■ 4.73
TSEN54-209ENST00000583454 RAD54L2Q9Y4B4 1467 aa44.59■■■■■ 4.73
TSEN54-209ENST00000583454 CHD1O14646 1710 aa44.58■■■■■ 4.73
TSEN54-209ENST00000583454 CUX1P39880 1505 aa44.54■■■■■ 4.72
TSEN54-209ENST00000583454 FGD5Q6ZNL6 1462 aa44.51■■■■■ 4.72
TSEN54-209ENST00000583454 SOGA1O94964 1423 aa44.5■■■■■ 4.71
TSEN54-209ENST00000583454 ARHGEF11O15085 1522 aa44.45■■■■■ 4.71
TSEN54-209ENST00000583454 WDR97A6NE52 1622 aa44.4■■■■■ 4.7
TSEN54-209ENST00000583454 TDRD9Q8NDG6 1382 aaKnown RBP44.39■■■■■ 4.7
TSEN54-209ENST00000583454 SNAPC4Q5SXM2 1469 aa44.24■■■■■ 4.67
TSEN54-209ENST00000583454 FBLN2P98095 1184 aa44.18■■■■■ 4.66
TSEN54-209ENST00000583454 MAGI1Q96QZ7 1491 aaPredicted RBP44.13■■■■■ 4.65
TSEN54-209ENST00000583454 GRIN2BQ13224 1484 aa44.12■■■■■ 4.65
TSEN54-209ENST00000583454 PBRM1Q86U86 1689 aa44.08■■■■■ 4.65
TSEN54-209ENST00000583454 CLASP1Q7Z460 1538 aa44.06■■■■■ 4.64
TSEN54-209ENST00000583454 ARAP1Q96P48 1450 aa44.03■■■■■ 4.64
TSEN54-209ENST00000583454 ABCA10Q8WWZ4 1543 aa44.03■■■■■ 4.64
TSEN54-209ENST00000583454 ABCA5Q8WWZ7 1642 aa44.02■■■■■ 4.64
TSEN54-209ENST00000583454 GAPVD1Q14C86 1478 aa43.99■■■■■ 4.63
TSEN54-209ENST00000583454 SYNJ2O15056 1496 aa43.97■■■■■ 4.63
TSEN54-209ENST00000583454 CYB5RLQ6IPT4 315 aa43.95■■■■■ 4.63
TSEN54-209ENST00000583454 SYNJ1O43426 1573 aa43.95■■■■■ 4.63
TSEN54-209ENST00000583454 BIVM-ERCC5R4GMW8 1640 aa43.91■■■■■ 4.62
TSEN54-209ENST00000583454 CHMP7Q8WUX9 453 aaPredicted RBP43.91■■■■■ 4.62
TSEN54-209ENST00000583454 TOP2BQ02880 1626 aa43.87■■■■■ 4.61
TSEN54-209ENST00000583454 WRNQ14191 1432 aaPredicted RBP eCLIP43.79■■■■■ 4.6
TSEN54-209ENST00000583454 ADAMTS12P58397 1594 aa43.65■■■■■ 4.58
TSEN54-209ENST00000583454 GRIN2AQ12879 1464 aa43.58■■■■■ 4.57
TSEN54-209ENST00000583454 CEP170Q5SW79 1584 aa43.49■■■■■ 4.55
TSEN54-209ENST00000583454 ERICH3Q5RHP9 1530 aa43.47■■■■■ 4.55
TSEN54-209ENST00000583454 NUP160Q12769 1436 aa43.46■■■■■ 4.55
TSEN54-209ENST00000583454 FHAD1B1AJZ9 1412 aa43.43■■■■■ 4.54
TSEN54-209ENST00000583454 ERCC6L2Q5T890 1561 aa43.39■■■■■ 4.54
TSEN54-209ENST00000583454 TRHP20396 242 aaPredicted RBP43.34■■■■■ 4.53
TSEN54-209ENST00000583454 SHROOM2Q13796 1616 aa43.33■■■■■ 4.53
TSEN54-209ENST00000583454 RUSC2Q8N2Y8 1516 aa43.05■■■■■ 4.48
TSEN54-209ENST00000583454 PRG4Q92954 1404 aaPredicted RBP42.95■■■■■ 4.47
TSEN54-209ENST00000583454 IGF1RP08069 1367 aa42.9■■■■■ 4.46
TSEN54-209ENST00000583454 KIF27Q86VH2 1401 aa42.89■■■■■ 4.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms