RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 NISCHQ9Y2I1 1504 aa31.11■■■□□ 2.57
TOP3A-215ENST00000583328 ABCC9O60706 1549 aa28.49■■■□□ 2.15
TOP3A-215ENST00000583328 CCDC180Q9P1Z9 1646 aa27.95■■■□□ 2.06
TOP3A-215ENST00000583328 DNAJC5BQ9UF47 199 aa27.11■■□□□ 1.93
TOP3A-215ENST00000583328 RB1CC1Q8TDY2 1594 aa26.88■■□□□ 1.89
TOP3A-215ENST00000583328 DCAF8L2P0C7V8 631 aa26.64■■□□□ 1.86
TOP3A-215ENST00000583328 NACADO15069 1562 aa26.61■■□□□ 1.85
TOP3A-215ENST00000583328 PABPN1Q86U42 306 aaKnown RBP eCLIP26.57■■□□□ 1.84
TOP3A-215ENST00000583328 UNC13AQ9UPW8 1703 aa26.11■■□□□ 1.77
TOP3A-215ENST00000583328 MYO15BQ96JP2 1530 aa26.11■■□□□ 1.77
TOP3A-215ENST00000583328 BICRAQ9NZM4 1560 aa26.07■■□□□ 1.76
TOP3A-215ENST00000583328 CECR2Q9BXF3 1484 aa25.7■■□□□ 1.7
TOP3A-215ENST00000583328 SHROOM4Q9ULL8 1493 aa25.7■■□□□ 1.7
TOP3A-215ENST00000583328 ZCCHC6Q5VYS8 1495 aaKnown RBP25.68■■□□□ 1.7
TOP3A-215ENST00000583328 DCAF1Q9Y4B6 1507 aa25.63■■□□□ 1.69
TOP3A-215ENST00000583328 CC2D2AQ9P2K1 1620 aa25.63■■□□□ 1.69
TOP3A-215ENST00000583328 SCRIBQ14160 1630 aa25.54■■□□□ 1.68
TOP3A-215ENST00000583328 EIF4G1Q04637 1599 aaKnown RBP25.5■■□□□ 1.67
TOP3A-215ENST00000583328 DNAJC5Q9H3Z4 198 aa25.18■■□□□ 1.62
TOP3A-215ENST00000583328 CUX2O14529 1486 aa24.67■■□□□ 1.54
TOP3A-215ENST00000583328 ERCC6Q03468 1493 aa24.64■■□□□ 1.54
TOP3A-215ENST00000583328 NCAPD3P42695 1498 aa24.62■■□□□ 1.53
TOP3A-215ENST00000583328 ATAD2BQ9ULI0 1458 aa24.49■■□□□ 1.51
TOP3A-215ENST00000583328 SMARCA2P51531 1590 aa24.37■■□□□ 1.49
TOP3A-215ENST00000583328 NESP48681 1621 aa24.35■■□□□ 1.49
TOP3A-215ENST00000583328 HMGXB3Q12766 1538 aa24.33■■□□□ 1.49
TOP3A-215ENST00000583328 SMARCA4P51532 1647 aa24.3■■□□□ 1.48
TOP3A-215ENST00000583328 BAZ1BQ9UIG0 1483 aaKnown RBP24.24■■□□□ 1.47
TOP3A-215ENST00000583328 BAZ1AQ9NRL2 1556 aaPredicted RBP24.16■■□□□ 1.46
TOP3A-215ENST00000583328 THOC2Q8NI27 1593 aaKnown RBP24.07■■□□□ 1.44
TOP3A-215ENST00000583328 LAMC3Q9Y6N6 1575 aa24.06■■□□□ 1.44
TOP3A-215ENST00000583328 PEG3Q9GZU2 1588 aa24.04■■□□□ 1.44
TOP3A-215ENST00000583328 PDS5BQ9NTI5 1447 aa24.04■■□□□ 1.44
TOP3A-215ENST00000583328 MROH2BQ7Z745 1585 aa23.97■■□□□ 1.43
TOP3A-215ENST00000583328 TRIM41Q8WV44 630 aa23.97■■□□□ 1.43
TOP3A-215ENST00000583328 CADPSQ9ULU8 1353 aa23.91■■□□□ 1.42
TOP3A-215ENST00000583328 KIF21AQ7Z4S6 1674 aa23.89■■□□□ 1.42
TOP3A-215ENST00000583328 MRC2Q9UBG0 1479 aa23.81■■□□□ 1.4
TOP3A-215ENST00000583328 WDR62O43379 1518 aa23.7■■□□□ 1.38
TOP3A-215ENST00000583328 CEP164Q9UPV0 1460 aa23.64■■□□□ 1.38
TOP3A-215ENST00000583328 OSCARQ8IYS5 282 aa23.62■■□□□ 1.37
TOP3A-215ENST00000583328 WIZO95785 1651 aa23.62■■□□□ 1.37
TOP3A-215ENST00000583328 FANCD2Q9BXW9 1451 aa23.59■■□□□ 1.37
TOP3A-215ENST00000583328 CFTRP13569 1480 aa23.5■■□□□ 1.35
TOP3A-215ENST00000583328 URB2Q14146 1524 aaKnown RBP23.39■■□□□ 1.34
TOP3A-215ENST00000583328 RSF1Q96T23 1441 aaPredicted RBP23.39■■□□□ 1.33
TOP3A-215ENST00000583328 TOP2AP11388 1531 aaKnown RBP23.32■■□□□ 1.32
TOP3A-215ENST00000583328 IFT140Q96RY7 1462 aa23.19■■□□□ 1.3
TOP3A-215ENST00000583328 ZNF608Q9ULD9 1512 aaPredicted RBP23.18■■□□□ 1.3
TOP3A-215ENST00000583328 RIMBP3CA6NJZ7 1639 aa23.17■■□□□ 1.3
TOP3A-215ENST00000583328 RIMBP3BA6NNM3 1639 aa23.17■■□□□ 1.3
TOP3A-215ENST00000583328 RIMBP3Q9UFD9 1639 aa23.17■■□□□ 1.3
TOP3A-215ENST00000583328 CCDC88BA6NC98 1476 aa23.11■■□□□ 1.29
TOP3A-215ENST00000583328 ARHGEF11O15085 1522 aa23.1■■□□□ 1.29
TOP3A-215ENST00000583328 CYB5RLQ6IPT4 315 aa23.1■■□□□ 1.29
TOP3A-215ENST00000583328 TOPBP1Q92547 1522 aa23.08■■□□□ 1.29
TOP3A-215ENST00000583328 PRDM2Q13029 1718 aa23.02■■□□□ 1.28
TOP3A-215ENST00000583328 ABCC8Q09428 1581 aa23.02■■□□□ 1.28
TOP3A-215ENST00000583328 TRHP20396 242 aaPredicted RBP22.99■■□□□ 1.27
TOP3A-215ENST00000583328 FBLN2P98095 1184 aa22.99■■□□□ 1.27
TOP3A-215ENST00000583328 AQRO60306 1485 aaKnown RBP eCLIP22.98■■□□□ 1.274e-6■■□□□ 14.3
TOP3A-215ENST00000583328 EIF4G3O43432 1585 aaKnown RBP22.95■■□□□ 1.26
TOP3A-215ENST00000583328 DNMBPQ6XZF7 1577 aa22.93■■□□□ 1.26
TOP3A-215ENST00000583328 ARAP1Q96P48 1450 aa22.86■■□□□ 1.25
TOP3A-215ENST00000583328 TARBP1Q13395 1621 aaKnown RBP22.83■■□□□ 1.25
TOP3A-215ENST00000583328 POLA1P09884 1462 aaPredicted RBP22.83■■□□□ 1.25
TOP3A-215ENST00000583328 CHD1O14646 1710 aa22.82■■□□□ 1.24
TOP3A-215ENST00000583328 TDRD9Q8NDG6 1382 aaKnown RBP22.8■■□□□ 1.24
TOP3A-215ENST00000583328 SOGA1O94964 1423 aa22.79■■□□□ 1.24
TOP3A-215ENST00000583328 RAD54L2Q9Y4B4 1467 aa22.79■■□□□ 1.24
TOP3A-215ENST00000583328 CHMP7Q8WUX9 453 aaPredicted RBP22.75■■□□□ 1.23
TOP3A-215ENST00000583328 SNAPC4Q5SXM2 1469 aa22.69■■□□□ 1.22
TOP3A-215ENST00000583328 FGD5Q6ZNL6 1462 aa22.64■■□□□ 1.21
TOP3A-215ENST00000583328 AEBP2Q6ZN18 517 aaPredicted RBP22.6■■□□□ 1.21
TOP3A-215ENST00000583328 CLASP1Q7Z460 1538 aa22.6■■□□□ 1.21
TOP3A-215ENST00000583328 MAGI1Q96QZ7 1491 aaPredicted RBP22.6■■□□□ 1.21
TOP3A-215ENST00000583328 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
TOP3A-215ENST00000583328 GRIN2BQ13224 1484 aa22.59■■□□□ 1.21
TOP3A-215ENST00000583328 WDR97A6NE52 1622 aa22.57■■□□□ 1.2
TOP3A-215ENST00000583328 SYNJ2O15056 1496 aa22.54■■□□□ 1.2
TOP3A-215ENST00000583328 CUX1P39880 1505 aa22.53■■□□□ 1.2
TOP3A-215ENST00000583328 GAPVD1Q14C86 1478 aa22.47■■□□□ 1.19
TOP3A-215ENST00000583328 ABCA10Q8WWZ4 1543 aa22.35■■□□□ 1.17
TOP3A-215ENST00000583328 PBRM1Q86U86 1689 aa22.33■■□□□ 1.16
TOP3A-215ENST00000583328 ABCA5Q8WWZ7 1642 aa22.27■■□□□ 1.16
TOP3A-215ENST00000583328 GRIN2AQ12879 1464 aa22.27■■□□□ 1.16
TOP3A-215ENST00000583328 ERCC6L2Q5T890 1561 aa22.25■■□□□ 1.15
TOP3A-215ENST00000583328 WRNQ14191 1432 aaPredicted RBP eCLIP22.24■■□□□ 1.15
TOP3A-215ENST00000583328 NUP160Q12769 1436 aa22.22■■□□□ 1.15
TOP3A-215ENST00000583328 SUPT5HO00267 1087 aaKnown RBP22.21■■□□□ 1.15
TOP3A-215ENST00000583328 CEP170Q5SW79 1584 aa22.19■■□□□ 1.14
TOP3A-215ENST00000583328 FHAD1B1AJZ9 1412 aa22.18■■□□□ 1.14
TOP3A-215ENST00000583328 ADAMTS12P58397 1594 aa22.15■■□□□ 1.14
TOP3A-215ENST00000583328 JPH4Q96JJ6 628 aa22.11■■□□□ 1.13
TOP3A-215ENST00000583328 PRG4Q92954 1404 aaPredicted RBP22.09■■□□□ 1.13
TOP3A-215ENST00000583328 SHROOM2Q13796 1616 aa22.06■■□□□ 1.12
TOP3A-215ENST00000583328 ERICH3Q5RHP9 1530 aa22.05■■□□□ 1.12
TOP3A-215ENST00000583328 NPM1P06748 294 aaKnown RBP eCLIP22.04■■□□□ 1.12
TOP3A-215ENST00000583328 FAM69CQ0P6D2 419 aa22.04■■□□□ 1.12
TOP3A-215ENST00000583328 TOP2BQ02880 1626 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms