RNA–Protein interactions for RNA: ENST00000582914.1

RARA-210, Transcript of retinoic acid receptor alpha, humanhuman

TSL 4

Gene RARA, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-210ENST00000582914 NISCHQ9Y2I1 1504 aa29.96■■■□□ 2.39
RARA-210ENST00000582914 CCDC180Q9P1Z9 1646 aa27.14■■□□□ 1.94
RARA-210ENST00000582914 ABCC9O60706 1549 aa27.11■■□□□ 1.93
RARA-210ENST00000582914 RB1CC1Q8TDY2 1594 aa25.88■■□□□ 1.73
RARA-210ENST00000582914 NACADO15069 1562 aa25.65■■□□□ 1.7
RARA-210ENST00000582914 DNAJC5BQ9UF47 199 aa25.52■■□□□ 1.68
RARA-210ENST00000582914 UNC13AQ9UPW8 1703 aa25.32■■□□□ 1.64
RARA-210ENST00000582914 MYO15BQ96JP2 1530 aa25.26■■□□□ 1.63
RARA-210ENST00000582914 DCAF8L2P0C7V8 631 aa25.21■■□□□ 1.63
RARA-210ENST00000582914 PABPN1Q86U42 306 aaKnown RBP eCLIP25.12■■□□□ 1.61
RARA-210ENST00000582914 BICRAQ9NZM4 1560 aa25.05■■□□□ 1.6
RARA-210ENST00000582914 SHROOM4Q9ULL8 1493 aa24.85■■□□□ 1.57
RARA-210ENST00000582914 DCAF1Q9Y4B6 1507 aa24.82■■□□□ 1.56
RARA-210ENST00000582914 ZCCHC6Q5VYS8 1495 aaKnown RBP24.79■■□□□ 1.56
RARA-210ENST00000582914 CC2D2AQ9P2K1 1620 aa24.58■■□□□ 1.53
RARA-210ENST00000582914 SCRIBQ14160 1630 aa24.55■■□□□ 1.52
RARA-210ENST00000582914 CECR2Q9BXF3 1484 aa24.51■■□□□ 1.51
RARA-210ENST00000582914 EIF4G1Q04637 1599 aaKnown RBP24.48■■□□□ 1.51
RARA-210ENST00000582914 DNAJC5Q9H3Z4 198 aa23.71■■□□□ 1.39
RARA-210ENST00000582914 NCAPD3P42695 1498 aa23.61■■□□□ 1.37
RARA-210ENST00000582914 CUX2O14529 1486 aa23.6■■□□□ 1.37
RARA-210ENST00000582914 ERCC6Q03468 1493 aa23.5■■□□□ 1.35
RARA-210ENST00000582914 SMARCA2P51531 1590 aa23.49■■□□□ 1.35
RARA-210ENST00000582914 HMGXB3Q12766 1538 aa23.49■■□□□ 1.35
RARA-210ENST00000582914 ATAD2BQ9ULI0 1458 aa23.48■■□□□ 1.35
RARA-210ENST00000582914 SMARCA4P51532 1647 aa23.46■■□□□ 1.35
RARA-210ENST00000582914 BAZ1AQ9NRL2 1556 aaPredicted RBP23.33■■□□□ 1.33
RARA-210ENST00000582914 PEG3Q9GZU2 1588 aa23.27■■□□□ 1.32
RARA-210ENST00000582914 BAZ1BQ9UIG0 1483 aaKnown RBP23.26■■□□□ 1.31
RARA-210ENST00000582914 NESP48681 1621 aa23.21■■□□□ 1.31
RARA-210ENST00000582914 LAMC3Q9Y6N6 1575 aa23.19■■□□□ 1.3
RARA-210ENST00000582914 THOC2Q8NI27 1593 aaKnown RBP23.16■■□□□ 1.3
RARA-210ENST00000582914 KIF21AQ7Z4S6 1674 aa23.05■■□□□ 1.28
RARA-210ENST00000582914 MROH2BQ7Z745 1585 aa23.02■■□□□ 1.28
RARA-210ENST00000582914 PDS5BQ9NTI5 1447 aa23■■□□□ 1.27
RARA-210ENST00000582914 CADPSQ9ULU8 1353 aa22.85■■□□□ 1.25
RARA-210ENST00000582914 MRC2Q9UBG0 1479 aa22.8■■□□□ 1.24
RARA-210ENST00000582914 WDR62O43379 1518 aa22.79■■□□□ 1.24
RARA-210ENST00000582914 WIZO95785 1651 aa22.78■■□□□ 1.24
RARA-210ENST00000582914 CEP164Q9UPV0 1460 aa22.68■■□□□ 1.22
RARA-210ENST00000582914 FANCD2Q9BXW9 1451 aa22.6■■□□□ 1.21
RARA-210ENST00000582914 CFTRP13569 1480 aa22.57■■□□□ 1.2
RARA-210ENST00000582914 PRDM2Q13029 1718 aa22.53■■□□□ 1.2
RARA-210ENST00000582914 TOP2AP11388 1531 aaKnown RBP22.52■■□□□ 1.19
RARA-210ENST00000582914 TRIM41Q8WV44 630 aa22.51■■□□□ 1.19
RARA-210ENST00000582914 RSF1Q96T23 1441 aaPredicted RBP22.45■■□□□ 1.18
RARA-210ENST00000582914 URB2Q14146 1524 aaKnown RBP22.4■■□□□ 1.18
RARA-210ENST00000582914 OSCARQ8IYS5 282 aa22.38■■□□□ 1.17
RARA-210ENST00000582914 IFT140Q96RY7 1462 aa22.24■■□□□ 1.15
RARA-210ENST00000582914 CCDC88BA6NC98 1476 aa22.19■■□□□ 1.14
RARA-210ENST00000582914 ABCC8Q09428 1581 aa22.19■■□□□ 1.14
RARA-210ENST00000582914 RIMBP3CA6NJZ7 1639 aa22.19■■□□□ 1.14
RARA-210ENST00000582914 RIMBP3BA6NNM3 1639 aa22.19■■□□□ 1.14
RARA-210ENST00000582914 RIMBP3Q9UFD9 1639 aa22.19■■□□□ 1.14
RARA-210ENST00000582914 TOPBP1Q92547 1522 aa22.16■■□□□ 1.14
RARA-210ENST00000582914 ZNF608Q9ULD9 1512 aaPredicted RBP22.13■■□□□ 1.13
RARA-210ENST00000582914 EIF4G3O43432 1585 aaKnown RBP22.11■■□□□ 1.13
RARA-210ENST00000582914 DNMBPQ6XZF7 1577 aa22.11■■□□□ 1.13
RARA-210ENST00000582914 ARHGEF11O15085 1522 aa22.06■■□□□ 1.12
RARA-210ENST00000582914 CHD1O14646 1710 aa22.02■■□□□ 1.12
RARA-210ENST00000582914 TARBP1Q13395 1621 aaKnown RBP22.01■■□□□ 1.11
RARA-210ENST00000582914 WDR97A6NE52 1622 aa21.91■■□□□ 1.1
RARA-210ENST00000582914 POLA1P09884 1462 aaPredicted RBP21.9■■□□□ 1.1
RARA-210ENST00000582914 AQRO60306 1485 aaKnown RBP eCLIP21.9■■□□□ 1.1
RARA-210ENST00000582914 CYB5RLQ6IPT4 315 aa21.81■■□□□ 1.08
RARA-210ENST00000582914 ARAP1Q96P48 1450 aa21.8■■□□□ 1.08
RARA-210ENST00000582914 SOGA1O94964 1423 aa21.78■■□□□ 1.08
RARA-210ENST00000582914 FBLN2P98095 1184 aa21.77■■□□□ 1.08
RARA-210ENST00000582914 RAD54L2Q9Y4B4 1467 aa21.76■■□□□ 1.07
RARA-210ENST00000582914 SYNJ1O43426 1573 aa21.74■■□□□ 1.07
RARA-210ENST00000582914 FGD5Q6ZNL6 1462 aa21.73■■□□□ 1.07
RARA-210ENST00000582914 MAGI1Q96QZ7 1491 aaPredicted RBP21.73■■□□□ 1.07
RARA-210ENST00000582914 SNAPC4Q5SXM2 1469 aa21.71■■□□□ 1.07
RARA-210ENST00000582914 CLASP1Q7Z460 1538 aa21.71■■□□□ 1.07
RARA-210ENST00000582914 TDRD9Q8NDG6 1382 aaKnown RBP21.7■■□□□ 1.06
RARA-210ENST00000582914 CUX1P39880 1505 aa21.66■■□□□ 1.06
RARA-210ENST00000582914 GRIN2BQ13224 1484 aa21.66■■□□□ 1.06
RARA-210ENST00000582914 TRHP20396 242 aaPredicted RBP21.66■■□□□ 1.06
RARA-210ENST00000582914 PBRM1Q86U86 1689 aa21.66■■□□□ 1.06
RARA-210ENST00000582914 SYNJ2O15056 1496 aa21.63■■□□□ 1.05
RARA-210ENST00000582914 CHMP7Q8WUX9 453 aaPredicted RBP21.62■■□□□ 1.05
RARA-210ENST00000582914 GAPVD1Q14C86 1478 aa21.54■■□□□ 1.04
RARA-210ENST00000582914 ABCA5Q8WWZ7 1642 aa21.54■■□□□ 1.04
RARA-210ENST00000582914 ABCA10Q8WWZ4 1543 aa21.51■■□□□ 1.03
RARA-210ENST00000582914 GRIN2AQ12879 1464 aa21.38■■□□□ 1.01
RARA-210ENST00000582914 BIVM-ERCC5R4GMW8 1640 aa21.37■■□□□ 1.01
RARA-210ENST00000582914 ADAMTS12P58397 1594 aa21.37■■□□□ 1.01
RARA-210ENST00000582914 WRNQ14191 1432 aaPredicted RBP eCLIP21.36■■□□□ 1.01
RARA-210ENST00000582914 TOP2BQ02880 1626 aa21.33■■□□□ 1.01
RARA-210ENST00000582914 NUP160Q12769 1436 aa21.31■■□□□ 1
RARA-210ENST00000582914 SHROOM2Q13796 1616 aa21.31■■□□□ 1
RARA-210ENST00000582914 CEP170Q5SW79 1584 aa21.31■■□□□ 1
RARA-210ENST00000582914 ERICH3Q5RHP9 1530 aa21.28■■□□□ 1
RARA-210ENST00000582914 FHAD1B1AJZ9 1412 aa21.27■■□□□ 1
RARA-210ENST00000582914 ERCC6L2Q5T890 1561 aa21.27■□□□□ 0.99
RARA-210ENST00000582914 AEBP2Q6ZN18 517 aaPredicted RBP21.24■□□□□ 0.99
RARA-210ENST00000582914 SUPT5HO00267 1087 aaKnown RBP21.18■□□□□ 0.98
RARA-210ENST00000582914 KIF13AQ9H1H9 1805 aa21.17■□□□□ 0.98
RARA-210ENST00000582914 RUSC2Q8N2Y8 1516 aa21.09■□□□□ 0.97
RARA-210ENST00000582914 PRG4Q92954 1404 aaPredicted RBP21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms