RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 NISCHQ9Y2I1 1504 aa34.36■■■■□ 3.09
SS18-222ENST00000582792 ABCC9O60706 1549 aa31.1■■■□□ 2.57
SS18-222ENST00000582792 CCDC180Q9P1Z9 1646 aa30.95■■■□□ 2.54
SS18-222ENST00000582792 RB1CC1Q8TDY2 1594 aa29.54■■■□□ 2.32
SS18-222ENST00000582792 DNAJC5BQ9UF47 199 aa29.35■■■□□ 2.29
SS18-222ENST00000582792 NACADO15069 1562 aa29.3■■■□□ 2.28
SS18-222ENST00000582792 DCAF8L2P0C7V8 631 aa29.04■■■□□ 2.24
SS18-222ENST00000582792 PABPN1Q86U42 306 aaKnown RBP eCLIP28.91■■■□□ 2.22
SS18-222ENST00000582792 UNC13AQ9UPW8 1703 aa28.87■■■□□ 2.21
SS18-222ENST00000582792 MYO15BQ96JP2 1530 aa28.84■■■□□ 2.21
SS18-222ENST00000582792 BICRAQ9NZM4 1560 aa28.7■■■□□ 2.18
SS18-222ENST00000582792 ZCCHC6Q5VYS8 1495 aaKnown RBP28.45■■■□□ 2.14
SS18-222ENST00000582792 DCAF1Q9Y4B6 1507 aa28.4■■■□□ 2.14
SS18-222ENST00000582792 SHROOM4Q9ULL8 1493 aa28.32■■■□□ 2.12
SS18-222ENST00000582792 SCRIBQ14160 1630 aa28.15■■■□□ 2.1
SS18-222ENST00000582792 CC2D2AQ9P2K1 1620 aa28.1■■■□□ 2.09
SS18-222ENST00000582792 CECR2Q9BXF3 1484 aa28.05■■■□□ 2.08
SS18-222ENST00000582792 EIF4G1Q04637 1599 aaKnown RBP28■■■□□ 2.07
SS18-222ENST00000582792 DNAJC5Q9H3Z4 198 aa27.11■■□□□ 1.93
SS18-222ENST00000582792 NCAPD3P42695 1498 aa27.05■■□□□ 1.92
SS18-222ENST00000582792 CUX2O14529 1486 aa26.93■■□□□ 1.9
SS18-222ENST00000582792 ATAD2BQ9ULI0 1458 aa26.93■■□□□ 1.9
SS18-222ENST00000582792 ERCC6Q03468 1493 aa26.87■■□□□ 1.89
SS18-222ENST00000582792 SMARCA4P51532 1647 aa26.86■■□□□ 1.89
SS18-222ENST00000582792 SMARCA2P51531 1590 aa26.84■■□□□ 1.89
SS18-222ENST00000582792 HMGXB3Q12766 1538 aa26.84■■□□□ 1.89
SS18-222ENST00000582792 BAZ1AQ9NRL2 1556 aaPredicted RBP26.7■■□□□ 1.86
SS18-222ENST00000582792 NESP48681 1621 aa26.67■■□□□ 1.86
SS18-222ENST00000582792 BAZ1BQ9UIG0 1483 aaKnown RBP26.65■■□□□ 1.86
SS18-222ENST00000582792 PEG3Q9GZU2 1588 aa26.61■■□□□ 1.85
SS18-222ENST00000582792 MROH2BQ7Z745 1585 aa26.47■■□□□ 1.83
SS18-222ENST00000582792 LAMC3Q9Y6N6 1575 aa26.47■■□□□ 1.83
SS18-222ENST00000582792 THOC2Q8NI27 1593 aaKnown RBP26.46■■□□□ 1.83
SS18-222ENST00000582792 KIF21AQ7Z4S6 1674 aa26.32■■□□□ 1.8
SS18-222ENST00000582792 PDS5BQ9NTI5 1447 aa26.31■■□□□ 1.8
SS18-222ENST00000582792 CADPSQ9ULU8 1353 aa26.2■■□□□ 1.79
SS18-222ENST00000582792 WIZO95785 1651 aa26.14■■□□□ 1.78
SS18-222ENST00000582792 MRC2Q9UBG0 1479 aa26.1■■□□□ 1.77
SS18-222ENST00000582792 WDR62O43379 1518 aa26.05■■□□□ 1.76
SS18-222ENST00000582792 CEP164Q9UPV0 1460 aa25.96■■□□□ 1.75
SS18-222ENST00000582792 FANCD2Q9BXW9 1451 aa25.91■■□□□ 1.74
SS18-222ENST00000582792 CFTRP13569 1480 aa25.87■■□□□ 1.73
SS18-222ENST00000582792 RSF1Q96T23 1441 aaPredicted RBP25.85■■□□□ 1.73
SS18-222ENST00000582792 TRIM41Q8WV44 630 aa25.81■■□□□ 1.72
SS18-222ENST00000582792 TOP2AP11388 1531 aaKnown RBP25.81■■□□□ 1.72
SS18-222ENST00000582792 URB2Q14146 1524 aaKnown RBP25.72■■□□□ 1.71
SS18-222ENST00000582792 OSCARQ8IYS5 282 aa25.63■■□□□ 1.69
SS18-222ENST00000582792 PRDM2Q13029 1718 aa25.6■■□□□ 1.69
SS18-222ENST00000582792 CCDC88BA6NC98 1476 aa25.51■■□□□ 1.67
SS18-222ENST00000582792 IFT140Q96RY7 1462 aa25.45■■□□□ 1.66
SS18-222ENST00000582792 ZNF608Q9ULD9 1512 aaPredicted RBP25.42■■□□□ 1.66
SS18-222ENST00000582792 TOPBP1Q92547 1522 aa25.4■■□□□ 1.66
SS18-222ENST00000582792 ABCC8Q09428 1581 aa25.34■■□□□ 1.65
SS18-222ENST00000582792 RIMBP3CA6NJZ7 1639 aa25.34■■□□□ 1.65
SS18-222ENST00000582792 RIMBP3BA6NNM3 1639 aa25.34■■□□□ 1.65
SS18-222ENST00000582792 RIMBP3Q9UFD9 1639 aa25.34■■□□□ 1.65
SS18-222ENST00000582792 DNMBPQ6XZF7 1577 aa25.29■■□□□ 1.64
SS18-222ENST00000582792 EIF4G3O43432 1585 aaKnown RBP25.28■■□□□ 1.64
SS18-222ENST00000582792 ARHGEF11O15085 1522 aa25.23■■□□□ 1.63
SS18-222ENST00000582792 TARBP1Q13395 1621 aaKnown RBP25.2■■□□□ 1.62
SS18-222ENST00000582792 AQRO60306 1485 aaKnown RBP eCLIP25.15■■□□□ 1.625e-6■■■□□ 16.9
SS18-222ENST00000582792 POLA1P09884 1462 aaPredicted RBP25.13■■□□□ 1.61
SS18-222ENST00000582792 CHD1O14646 1710 aa25.12■■□□□ 1.61
SS18-222ENST00000582792 CYB5RLQ6IPT4 315 aa25.03■■□□□ 1.6
SS18-222ENST00000582792 RAD54L2Q9Y4B4 1467 aa25.02■■□□□ 1.6
SS18-222ENST00000582792 FBLN2P98095 1184 aa25.01■■□□□ 1.59
SS18-222ENST00000582792 SOGA1O94964 1423 aa25■■□□□ 1.59
SS18-222ENST00000582792 ARAP1Q96P48 1450 aa24.97■■□□□ 1.59
SS18-222ENST00000582792 TDRD9Q8NDG6 1382 aaKnown RBP24.97■■□□□ 1.59
SS18-222ENST00000582792 WDR97A6NE52 1622 aa24.95■■□□□ 1.58
SS18-222ENST00000582792 FGD5Q6ZNL6 1462 aa24.93■■□□□ 1.58
SS18-222ENST00000582792 SNAPC4Q5SXM2 1469 aa24.9■■□□□ 1.58
SS18-222ENST00000582792 CUX1P39880 1505 aa24.89■■□□□ 1.57
SS18-222ENST00000582792 CLASP1Q7Z460 1538 aa24.85■■□□□ 1.57
SS18-222ENST00000582792 MAGI1Q96QZ7 1491 aaPredicted RBP24.84■■□□□ 1.57
SS18-222ENST00000582792 GRIN2BQ13224 1484 aa24.82■■□□□ 1.56
SS18-222ENST00000582792 TRHP20396 242 aaPredicted RBP24.81■■□□□ 1.56
SS18-222ENST00000582792 CHMP7Q8WUX9 453 aaPredicted RBP24.81■■□□□ 1.56
SS18-222ENST00000582792 SYNJ1O43426 1573 aa24.8■■□□□ 1.56
SS18-222ENST00000582792 SYNJ2O15056 1496 aa24.76■■□□□ 1.55
SS18-222ENST00000582792 PBRM1Q86U86 1689 aa24.71■■□□□ 1.55
SS18-222ENST00000582792 GAPVD1Q14C86 1478 aa24.7■■□□□ 1.55
SS18-222ENST00000582792 ABCA10Q8WWZ4 1543 aa24.65■■□□□ 1.54
SS18-222ENST00000582792 ABCA5Q8WWZ7 1642 aa24.64■■□□□ 1.53
SS18-222ENST00000582792 SUPT5HO00267 1087 aaKnown RBP24.51■■□□□ 1.51
SS18-222ENST00000582792 WRNQ14191 1432 aaPredicted RBP eCLIP24.5■■□□□ 1.51
SS18-222ENST00000582792 GRIN2AQ12879 1464 aa24.5■■□□□ 1.51
SS18-222ENST00000582792 ADAMTS12P58397 1594 aa24.46■■□□□ 1.51
SS18-222ENST00000582792 BIVM-ERCC5R4GMW8 1640 aa24.45■■□□□ 1.5
SS18-222ENST00000582792 TOP2BQ02880 1626 aa24.44■■□□□ 1.5
SS18-222ENST00000582792 NUP160Q12769 1436 aa24.44■■□□□ 1.5
SS18-222ENST00000582792 ERCC6L2Q5T890 1561 aa24.42■■□□□ 1.5
SS18-222ENST00000582792 CEP170Q5SW79 1584 aa24.42■■□□□ 1.5
SS18-222ENST00000582792 FHAD1B1AJZ9 1412 aa24.38■■□□□ 1.49
SS18-222ENST00000582792 SHROOM2Q13796 1616 aa24.35■■□□□ 1.49
SS18-222ENST00000582792 ERICH3Q5RHP9 1530 aa24.35■■□□□ 1.49
SS18-222ENST00000582792 AEBP2Q6ZN18 517 aaPredicted RBP24.23■■□□□ 1.47
SS18-222ENST00000582792 PRG4Q92954 1404 aaPredicted RBP24.19■■□□□ 1.46
SS18-222ENST00000582792 JPH4Q96JJ6 628 aa24.15■■□□□ 1.46
SS18-222ENST00000582792 RUSC2Q8N2Y8 1516 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms