RNA–Protein interactions for RNA: ENST00000582370.1

PDLIM1P3-201, Transcript of PDZ and LIM domain 1 pseudogene 3, humanhuman

BASIC

Gene PDLIM1P3, Length 599 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1P3-201ENST00000582370 NISCHQ9Y2I1 1504 aa21.96■■□□□ 1.11
PDLIM1P3-201ENST00000582370 ABCC9O60706 1549 aa20.4■□□□□ 0.86
PDLIM1P3-201ENST00000582370 CCDC180Q9P1Z9 1646 aa20.08■□□□□ 0.8
PDLIM1P3-201ENST00000582370 DNAJC5BQ9UF47 199 aa19.51■□□□□ 0.71
PDLIM1P3-201ENST00000582370 RB1CC1Q8TDY2 1594 aa19.29■□□□□ 0.68
PDLIM1P3-201ENST00000582370 NACADO15069 1562 aa19.02■□□□□ 0.64
PDLIM1P3-201ENST00000582370 UNC13AQ9UPW8 1703 aa18.94■□□□□ 0.62
PDLIM1P3-201ENST00000582370 PABPN1Q86U42 306 aaKnown RBP eCLIP18.8■□□□□ 0.6
PDLIM1P3-201ENST00000582370 BICRAQ9NZM4 1560 aa18.72■□□□□ 0.59
PDLIM1P3-201ENST00000582370 MYO15BQ96JP2 1530 aa18.61■□□□□ 0.57
PDLIM1P3-201ENST00000582370 DCAF8L2P0C7V8 631 aa18.56■□□□□ 0.56
PDLIM1P3-201ENST00000582370 SHROOM4Q9ULL8 1493 aa18.5■□□□□ 0.55
PDLIM1P3-201ENST00000582370 CC2D2AQ9P2K1 1620 aa18.48■□□□□ 0.55
PDLIM1P3-201ENST00000582370 CECR2Q9BXF3 1484 aa18.46■□□□□ 0.54
PDLIM1P3-201ENST00000582370 DNAJC5Q9H3Z4 198 aa18.37■□□□□ 0.53
PDLIM1P3-201ENST00000582370 EIF4G1Q04637 1599 aaKnown RBP18.31■□□□□ 0.52
PDLIM1P3-201ENST00000582370 DCAF1Q9Y4B6 1507 aa18.17■□□□□ 0.5
PDLIM1P3-201ENST00000582370 SCRIBQ14160 1630 aa18.13■□□□□ 0.49
PDLIM1P3-201ENST00000582370 ZCCHC6Q5VYS8 1495 aaKnown RBP18.1■□□□□ 0.49
PDLIM1P3-201ENST00000582370 CUX2O14529 1486 aa17.89■□□□□ 0.45
PDLIM1P3-201ENST00000582370 ERCC6Q03468 1493 aa17.69■□□□□ 0.42
PDLIM1P3-201ENST00000582370 NCAPD3P42695 1498 aa17.51■□□□□ 0.39
PDLIM1P3-201ENST00000582370 THOC2Q8NI27 1593 aaKnown RBP17.42■□□□□ 0.38
PDLIM1P3-201ENST00000582370 HMGXB3Q12766 1538 aa17.41■□□□□ 0.38
PDLIM1P3-201ENST00000582370 NESP48681 1621 aa17.37■□□□□ 0.37
PDLIM1P3-201ENST00000582370 ATAD2BQ9ULI0 1458 aa17.37■□□□□ 0.37
PDLIM1P3-201ENST00000582370 SMARCA2P51531 1590 aa17.36■□□□□ 0.37
PDLIM1P3-201ENST00000582370 TRIM41Q8WV44 630 aa17.29■□□□□ 0.36
PDLIM1P3-201ENST00000582370 SMARCA4P51532 1647 aa17.29■□□□□ 0.36
PDLIM1P3-201ENST00000582370 LAMC3Q9Y6N6 1575 aa17.28■□□□□ 0.36
PDLIM1P3-201ENST00000582370 KIF21AQ7Z4S6 1674 aa17.26■□□□□ 0.35
PDLIM1P3-201ENST00000582370 BAZ1BQ9UIG0 1483 aaKnown RBP17.19■□□□□ 0.34
PDLIM1P3-201ENST00000582370 PEG3Q9GZU2 1588 aa17.15■□□□□ 0.34
PDLIM1P3-201ENST00000582370 PDS5BQ9NTI5 1447 aa17.12■□□□□ 0.33
PDLIM1P3-201ENST00000582370 BAZ1AQ9NRL2 1556 aaPredicted RBP17.11■□□□□ 0.33
PDLIM1P3-201ENST00000582370 WDR62O43379 1518 aa17.04■□□□□ 0.32
PDLIM1P3-201ENST00000582370 MRC2Q9UBG0 1479 aa17.02■□□□□ 0.32
PDLIM1P3-201ENST00000582370 CADPSQ9ULU8 1353 aa16.91■□□□□ 0.3
PDLIM1P3-201ENST00000582370 MROH2BQ7Z745 1585 aa16.88■□□□□ 0.29
PDLIM1P3-201ENST00000582370 OSCARQ8IYS5 282 aa16.86■□□□□ 0.29
PDLIM1P3-201ENST00000582370 CEP164Q9UPV0 1460 aa16.86■□□□□ 0.29
PDLIM1P3-201ENST00000582370 RIMBP3CA6NJZ7 1639 aa16.83■□□□□ 0.28
PDLIM1P3-201ENST00000582370 RIMBP3BA6NNM3 1639 aa16.83■□□□□ 0.28
PDLIM1P3-201ENST00000582370 RIMBP3Q9UFD9 1639 aa16.83■□□□□ 0.28
PDLIM1P3-201ENST00000582370 FANCD2Q9BXW9 1451 aa16.75■□□□□ 0.27
PDLIM1P3-201ENST00000582370 WIZO95785 1651 aa16.69■□□□□ 0.26
PDLIM1P3-201ENST00000582370 ARHGEF11O15085 1522 aa16.69■□□□□ 0.26
PDLIM1P3-201ENST00000582370 CFTRP13569 1480 aa16.65■□□□□ 0.26
PDLIM1P3-201ENST00000582370 URB2Q14146 1524 aaKnown RBP16.65■□□□□ 0.26
PDLIM1P3-201ENST00000582370 PRDM2Q13029 1718 aa16.64■□□□□ 0.25
PDLIM1P3-201ENST00000582370 IFT140Q96RY7 1462 aa16.53■□□□□ 0.24
PDLIM1P3-201ENST00000582370 CHD1O14646 1710 aa16.5■□□□□ 0.23
PDLIM1P3-201ENST00000582370 ZNF608Q9ULD9 1512 aaPredicted RBP16.5■□□□□ 0.23
PDLIM1P3-201ENST00000582370 EIF4G3O43432 1585 aaKnown RBP16.49■□□□□ 0.23
PDLIM1P3-201ENST00000582370 CYB5RLQ6IPT4 315 aa16.47■□□□□ 0.23
PDLIM1P3-201ENST00000582370 ARAP1Q96P48 1450 aa16.47■□□□□ 0.23
PDLIM1P3-201ENST00000582370 TOP2AP11388 1531 aaKnown RBP16.46■□□□□ 0.23
PDLIM1P3-201ENST00000582370 TRHP20396 242 aaPredicted RBP16.46■□□□□ 0.23
PDLIM1P3-201ENST00000582370 RSF1Q96T23 1441 aaPredicted RBP16.42■□□□□ 0.22
PDLIM1P3-201ENST00000582370 AEBP2Q6ZN18 517 aaPredicted RBP16.41■□□□□ 0.22
PDLIM1P3-201ENST00000582370 TOPBP1Q92547 1522 aa16.39■□□□□ 0.21
PDLIM1P3-201ENST00000582370 ABCC8Q09428 1581 aa16.36■□□□□ 0.21
PDLIM1P3-201ENST00000582370 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
PDLIM1P3-201ENST00000582370 DNMBPQ6XZF7 1577 aa16.33■□□□□ 0.2
PDLIM1P3-201ENST00000582370 AQRO60306 1485 aaKnown RBP eCLIP16.26■□□□□ 0.19
PDLIM1P3-201ENST00000582370 CLASP1Q7Z460 1538 aa16.25■□□□□ 0.19
PDLIM1P3-201ENST00000582370 WDR97A6NE52 1622 aa16.21■□□□□ 0.19
PDLIM1P3-201ENST00000582370 FBLN2P98095 1184 aa16.21■□□□□ 0.19
PDLIM1P3-201ENST00000582370 SYNJ1O43426 1573 aa16.21■□□□□ 0.18
PDLIM1P3-201ENST00000582370 CCDC88BA6NC98 1476 aa16.2■□□□□ 0.18
PDLIM1P3-201ENST00000582370 POLA1P09884 1462 aaPredicted RBP16.19■□□□□ 0.18
PDLIM1P3-201ENST00000582370 SNAPC4Q5SXM2 1469 aa16.14■□□□□ 0.17
PDLIM1P3-201ENST00000582370 MAGI1Q96QZ7 1491 aaPredicted RBP16.11■□□□□ 0.17
PDLIM1P3-201ENST00000582370 RAD54L2Q9Y4B4 1467 aa16.08■□□□□ 0.16
PDLIM1P3-201ENST00000582370 GAPVD1Q14C86 1478 aa16.06■□□□□ 0.16
PDLIM1P3-201ENST00000582370 SOGA1O94964 1423 aa16.05■□□□□ 0.16
PDLIM1P3-201ENST00000582370 TDRD9Q8NDG6 1382 aaKnown RBP16.05■□□□□ 0.16
PDLIM1P3-201ENST00000582370 SYNJ2O15056 1496 aa16.04■□□□□ 0.16
PDLIM1P3-201ENST00000582370 PBRM1Q86U86 1689 aa16.04■□□□□ 0.16
PDLIM1P3-201ENST00000582370 CHMP7Q8WUX9 453 aaPredicted RBP16.03■□□□□ 0.16
PDLIM1P3-201ENST00000582370 GRIN2BQ13224 1484 aa16.03■□□□□ 0.16
PDLIM1P3-201ENST00000582370 FGD5Q6ZNL6 1462 aa16■□□□□ 0.15
PDLIM1P3-201ENST00000582370 KIF13AQ9H1H9 1805 aa15.98■□□□□ 0.15
PDLIM1P3-201ENST00000582370 CUX1P39880 1505 aa15.9■□□□□ 0.14
PDLIM1P3-201ENST00000582370 ERCC6L2Q5T890 1561 aa15.89■□□□□ 0.13
PDLIM1P3-201ENST00000582370 ABCA5Q8WWZ7 1642 aa15.89■□□□□ 0.13
PDLIM1P3-201ENST00000582370 CEP170Q5SW79 1584 aa15.87■□□□□ 0.13
PDLIM1P3-201ENST00000582370 SHROOM2Q13796 1616 aa15.86■□□□□ 0.13
PDLIM1P3-201ENST00000582370 GRIN2AQ12879 1464 aa15.83■□□□□ 0.12
PDLIM1P3-201ENST00000582370 ABCA10Q8WWZ4 1543 aa15.81■□□□□ 0.12
PDLIM1P3-201ENST00000582370 ADAMTS12P58397 1594 aa15.8■□□□□ 0.12
PDLIM1P3-201ENST00000582370 NUP160Q12769 1436 aa15.79■□□□□ 0.12
PDLIM1P3-201ENST00000582370 ILDR1Q86SU0 546 aaPredicted RBP15.75■□□□□ 0.11
PDLIM1P3-201ENST00000582370 KDM6BO15054 1643 aa15.73■□□□□ 0.11
PDLIM1P3-201ENST00000582370 ABCC10Q5T3U5 1492 aa15.72■□□□□ 0.11
PDLIM1P3-201ENST00000582370 DIP2BQ9P265 1576 aa15.72■□□□□ 0.11
PDLIM1P3-201ENST00000582370 MAPKBP1O60336 1514 aa15.72■□□□□ 0.11
PDLIM1P3-201ENST00000582370 KDM4FA0A1W2PPD8 638 aa15.66■□□□□ 0.1
PDLIM1P3-201ENST00000582370 FHAD1B1AJZ9 1412 aa15.66■□□□□ 0.1
PDLIM1P3-201ENST00000582370 TSPOAP1O95153 1857 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms