RNA–Protein interactions for RNA: ENST00000582122.1

TOP3A-212, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 553 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-212ENST00000582122 NISCHQ9Y2I1 1504 aa25.02■■□□□ 1.6
TOP3A-212ENST00000582122 CCDC180Q9P1Z9 1646 aa22.24■■□□□ 1.15
TOP3A-212ENST00000582122 ABCC9O60706 1549 aa22.05■■□□□ 1.12
TOP3A-212ENST00000582122 NACADO15069 1562 aa20.93■□□□□ 0.94
TOP3A-212ENST00000582122 RB1CC1Q8TDY2 1594 aa20.93■□□□□ 0.94
TOP3A-212ENST00000582122 MYO15BQ96JP2 1530 aa20.88■□□□□ 0.93
TOP3A-212ENST00000582122 DCAF8L2P0C7V8 631 aa20.86■□□□□ 0.93
TOP3A-212ENST00000582122 ZCCHC6Q5VYS8 1495 aaKnown RBP20.85■□□□□ 0.93
TOP3A-212ENST00000582122 DNAJC5BQ9UF47 199 aa20.84■□□□□ 0.93
TOP3A-212ENST00000582122 DCAF1Q9Y4B6 1507 aa20.78■□□□□ 0.92
TOP3A-212ENST00000582122 PABPN1Q86U42 306 aaKnown RBP eCLIP20.43■□□□□ 0.86
TOP3A-212ENST00000582122 UNC13AQ9UPW8 1703 aa20.35■□□□□ 0.85
TOP3A-212ENST00000582122 BICRAQ9NZM4 1560 aa20.25■□□□□ 0.83
TOP3A-212ENST00000582122 SCRIBQ14160 1630 aa20.19■□□□□ 0.82
TOP3A-212ENST00000582122 SHROOM4Q9ULL8 1493 aa20.18■□□□□ 0.82
TOP3A-212ENST00000582122 CECR2Q9BXF3 1484 aa19.93■□□□□ 0.78
TOP3A-212ENST00000582122 CC2D2AQ9P2K1 1620 aa19.91■□□□□ 0.78
TOP3A-212ENST00000582122 EIF4G1Q04637 1599 aaKnown RBP19.83■□□□□ 0.77
TOP3A-212ENST00000582122 DNAJC5Q9H3Z4 198 aa19.44■□□□□ 0.7
TOP3A-212ENST00000582122 BAZ1AQ9NRL2 1556 aaPredicted RBP19.43■□□□□ 0.7
TOP3A-212ENST00000582122 SMARCA4P51532 1647 aa19.37■□□□□ 0.69
TOP3A-212ENST00000582122 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
TOP3A-212ENST00000582122 NCAPD3P42695 1498 aa19.3■□□□□ 0.68
TOP3A-212ENST00000582122 ATAD2BQ9ULI0 1458 aa19.28■□□□□ 0.68
TOP3A-212ENST00000582122 PEG3Q9GZU2 1588 aa19.23■□□□□ 0.67
TOP3A-212ENST00000582122 CUX2O14529 1486 aa19.22■□□□□ 0.67
TOP3A-212ENST00000582122 MROH2BQ7Z745 1585 aa19.22■□□□□ 0.67
TOP3A-212ENST00000582122 HMGXB3Q12766 1538 aa19.2■□□□□ 0.66
TOP3A-212ENST00000582122 BAZ1BQ9UIG0 1483 aaKnown RBP19.14■□□□□ 0.65
TOP3A-212ENST00000582122 ERCC6Q03468 1493 aa19.13■□□□□ 0.65
TOP3A-212ENST00000582122 RSF1Q96T23 1441 aaPredicted RBP19.08■□□□□ 0.64
TOP3A-212ENST00000582122 WIZO95785 1651 aa18.99■□□□□ 0.63
TOP3A-212ENST00000582122 TOP2AP11388 1531 aaKnown RBP18.89■□□□□ 0.61
TOP3A-212ENST00000582122 NESP48681 1621 aa18.83■□□□□ 0.61
TOP3A-212ENST00000582122 LAMC3Q9Y6N6 1575 aa18.77■□□□□ 0.6
TOP3A-212ENST00000582122 THOC2Q8NI27 1593 aaKnown RBP18.76■□□□□ 0.59
TOP3A-212ENST00000582122 CADPSQ9ULU8 1353 aa18.74■□□□□ 0.59
TOP3A-212ENST00000582122 PDS5BQ9NTI5 1447 aa18.69■□□□□ 0.58
TOP3A-212ENST00000582122 CCDC88BA6NC98 1476 aa18.64■□□□□ 0.57
TOP3A-212ENST00000582122 SUPT5HO00267 1087 aaKnown RBP18.63■□□□□ 0.57
TOP3A-212ENST00000582122 CFTRP13569 1480 aa18.63■□□□□ 0.57
TOP3A-212ENST00000582122 KIF21AQ7Z4S6 1674 aa18.59■□□□□ 0.57
TOP3A-212ENST00000582122 MRC2Q9UBG0 1479 aa18.5■□□□□ 0.55
TOP3A-212ENST00000582122 FANCD2Q9BXW9 1451 aa18.49■□□□□ 0.55
TOP3A-212ENST00000582122 CEP164Q9UPV0 1460 aa18.48■□□□□ 0.55
TOP3A-212ENST00000582122 WDR62O43379 1518 aa18.47■□□□□ 0.55
TOP3A-212ENST00000582122 PRDM2Q13029 1718 aa18.45■□□□□ 0.54
TOP3A-212ENST00000582122 TRIM41Q8WV44 630 aa18.44■□□□□ 0.54
TOP3A-212ENST00000582122 ABCC8Q09428 1581 aa18.32■□□□□ 0.52
TOP3A-212ENST00000582122 URB2Q14146 1524 aaKnown RBP18.24■□□□□ 0.51
TOP3A-212ENST00000582122 OSCARQ8IYS5 282 aa18.22■□□□□ 0.51
TOP3A-212ENST00000582122 TOPBP1Q92547 1522 aa18.19■□□□□ 0.5
TOP3A-212ENST00000582122 DNMBPQ6XZF7 1577 aa18.19■□□□□ 0.5
TOP3A-212ENST00000582122 IFT140Q96RY7 1462 aa18.11■□□□□ 0.49
TOP3A-212ENST00000582122 CUX1P39880 1505 aa18.03■□□□□ 0.48
TOP3A-212ENST00000582122 POLA1P09884 1462 aaPredicted RBP18.03■□□□□ 0.48
TOP3A-212ENST00000582122 WRNQ14191 1432 aaPredicted RBP eCLIP18.02■□□□□ 0.48
TOP3A-212ENST00000582122 RIMBP3CA6NJZ7 1639 aa18.01■□□□□ 0.47
TOP3A-212ENST00000582122 RIMBP3BA6NNM3 1639 aa18.01■□□□□ 0.47
TOP3A-212ENST00000582122 RIMBP3Q9UFD9 1639 aa18.01■□□□□ 0.47
TOP3A-212ENST00000582122 SOGA1O94964 1423 aa18■□□□□ 0.47
TOP3A-212ENST00000582122 FGD5Q6ZNL6 1462 aa17.99■□□□□ 0.47
TOP3A-212ENST00000582122 ARHGEF11O15085 1522 aa17.96■□□□□ 0.47
TOP3A-212ENST00000582122 WDR97A6NE52 1622 aa17.95■□□□□ 0.46
TOP3A-212ENST00000582122 TARBP1Q13395 1621 aaKnown RBP17.95■□□□□ 0.46
TOP3A-212ENST00000582122 ZNF608Q9ULD9 1512 aaPredicted RBP17.95■□□□□ 0.46
TOP3A-212ENST00000582122 TOP2BQ02880 1626 aa17.94■□□□□ 0.46
TOP3A-212ENST00000582122 BIVM-ERCC5R4GMW8 1640 aa17.93■□□□□ 0.46
TOP3A-212ENST00000582122 RAD54L2Q9Y4B4 1467 aa17.9■□□□□ 0.46
TOP3A-212ENST00000582122 EIF4G3O43432 1585 aaKnown RBP17.88■□□□□ 0.45
TOP3A-212ENST00000582122 ABCA10Q8WWZ4 1543 aa17.87■□□□□ 0.45
TOP3A-212ENST00000582122 SYNJ1O43426 1573 aa17.87■□□□□ 0.45
TOP3A-212ENST00000582122 AQRO60306 1485 aaKnown RBP eCLIP17.84■□□□□ 0.451e-6■■■■□ 26.1
TOP3A-212ENST00000582122 TDRD9Q8NDG6 1382 aaKnown RBP17.84■□□□□ 0.45
TOP3A-212ENST00000582122 GRIN2BQ13224 1484 aa17.8■□□□□ 0.44
TOP3A-212ENST00000582122 GAPVD1Q14C86 1478 aa17.79■□□□□ 0.44
TOP3A-212ENST00000582122 CYB5RLQ6IPT4 315 aa17.77■□□□□ 0.44
TOP3A-212ENST00000582122 MAGI1Q96QZ7 1491 aaPredicted RBP17.75■□□□□ 0.43
TOP3A-212ENST00000582122 CHD1O14646 1710 aa17.75■□□□□ 0.43
TOP3A-212ENST00000582122 ARAP1Q96P48 1450 aa17.75■□□□□ 0.43
TOP3A-212ENST00000582122 ABCA5Q8WWZ7 1642 aa17.74■□□□□ 0.43
TOP3A-212ENST00000582122 SNAPC4Q5SXM2 1469 aa17.69■□□□□ 0.42
TOP3A-212ENST00000582122 TRHP20396 242 aaPredicted RBP17.69■□□□□ 0.42
TOP3A-212ENST00000582122 ERICH3Q5RHP9 1530 aa17.68■□□□□ 0.42
TOP3A-212ENST00000582122 FBLN2P98095 1184 aa17.68■□□□□ 0.42
TOP3A-212ENST00000582122 KIF27Q86VH2 1401 aa17.68■□□□□ 0.42
TOP3A-212ENST00000582122 CHMP7Q8WUX9 453 aaPredicted RBP17.68■□□□□ 0.42
TOP3A-212ENST00000582122 PBRM1Q86U86 1689 aa17.67■□□□□ 0.42
TOP3A-212ENST00000582122 SYNJ2O15056 1496 aa17.67■□□□□ 0.42
TOP3A-212ENST00000582122 FHAD1B1AJZ9 1412 aa17.62■□□□□ 0.41
TOP3A-212ENST00000582122 CLASP1Q7Z460 1538 aa17.59■□□□□ 0.41
TOP3A-212ENST00000582122 ADAMTS12P58397 1594 aa17.56■□□□□ 0.4
TOP3A-212ENST00000582122 IGF1RP08069 1367 aa17.55■□□□□ 0.4
TOP3A-212ENST00000582122 GRIN2AQ12879 1464 aa17.54■□□□□ 0.4
TOP3A-212ENST00000582122 CUL7Q14999 1698 aa17.52■□□□□ 0.39
TOP3A-212ENST00000582122 CARMIL1Q5VZK9 1371 aa17.47■□□□□ 0.39
TOP3A-212ENST00000582122 NUP160Q12769 1436 aa17.47■□□□□ 0.39
TOP3A-212ENST00000582122 EEA1Q15075 1411 aa17.45■□□□□ 0.38
TOP3A-212ENST00000582122 CHIC1Q5VXU3 224 aa17.44■□□□□ 0.38
TOP3A-212ENST00000582122 AEBP2Q6ZN18 517 aaPredicted RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms