RNA–Protein interactions for RNA: ENST00000581963.1

CDK12-207, Transcript of cyclin dependent kinase 12, humanhuman

TSL 3

Gene CDK12, Length 436 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK12-207ENST00000581963 NISCHQ9Y2I1 1504 aa15.79■□□□□ 0.12
CDK12-207ENST00000581963 ABCC9O60706 1549 aa14.38□□□□□ -0.11
CDK12-207ENST00000581963 CCDC180Q9P1Z9 1646 aa14.31□□□□□ -0.12
CDK12-207ENST00000581963 RB1CC1Q8TDY2 1594 aa13.64□□□□□ -0.23
CDK12-207ENST00000581963 DNAJC5BQ9UF47 199 aa13.61□□□□□ -0.23
CDK12-207ENST00000581963 NACADO15069 1562 aa13.5□□□□□ -0.25
CDK12-207ENST00000581963 UNC13AQ9UPW8 1703 aa13.46□□□□□ -0.25
CDK12-207ENST00000581963 PABPN1Q86U42 306 aaKnown RBP eCLIP13.31□□□□□ -0.28
CDK12-207ENST00000581963 BICRAQ9NZM4 1560 aa13.29□□□□□ -0.28
CDK12-207ENST00000581963 DCAF8L2P0C7V8 631 aa13.28□□□□□ -0.28
CDK12-207ENST00000581963 MYO15BQ96JP2 1530 aa13.26□□□□□ -0.29
CDK12-207ENST00000581963 ZCCHC6Q5VYS8 1495 aaKnown RBP13.07□□□□□ -0.32
CDK12-207ENST00000581963 SHROOM4Q9ULL8 1493 aa13.05□□□□□ -0.32
CDK12-207ENST00000581963 DCAF1Q9Y4B6 1507 aa13.04□□□□□ -0.32
CDK12-207ENST00000581963 CC2D2AQ9P2K1 1620 aa13.02□□□□□ -0.32
CDK12-207ENST00000581963 SCRIBQ14160 1630 aa13□□□□□ -0.33
CDK12-207ENST00000581963 CECR2Q9BXF3 1484 aa12.97□□□□□ -0.33
CDK12-207ENST00000581963 EIF4G1Q04637 1599 aaKnown RBP12.95□□□□□ -0.34
CDK12-207ENST00000581963 DNAJC5Q9H3Z4 198 aa12.58□□□□□ -0.4
CDK12-207ENST00000581963 CUX2O14529 1486 aa12.46□□□□□ -0.42
CDK12-207ENST00000581963 NCAPD3P42695 1498 aa12.44□□□□□ -0.42
CDK12-207ENST00000581963 ERCC6Q03468 1493 aa12.4□□□□□ -0.42
CDK12-207ENST00000581963 SMARCA4P51532 1647 aa12.4□□□□□ -0.42
CDK12-207ENST00000581963 ATAD2BQ9ULI0 1458 aa12.4□□□□□ -0.43
CDK12-207ENST00000581963 HMGXB3Q12766 1538 aa12.38□□□□□ -0.43
CDK12-207ENST00000581963 SMARCA2P51531 1590 aa12.36□□□□□ -0.43
CDK12-207ENST00000581963 NESP48681 1621 aa12.33□□□□□ -0.43
CDK12-207ENST00000581963 THOC2Q8NI27 1593 aaKnown RBP12.29□□□□□ -0.44
CDK12-207ENST00000581963 PEG3Q9GZU2 1588 aa12.27□□□□□ -0.44
CDK12-207ENST00000581963 BAZ1AQ9NRL2 1556 aaPredicted RBP12.27□□□□□ -0.44
CDK12-207ENST00000581963 BAZ1BQ9UIG0 1483 aaKnown RBP12.27□□□□□ -0.45
CDK12-207ENST00000581963 KIF21AQ7Z4S6 1674 aa12.25□□□□□ -0.45
CDK12-207ENST00000581963 LAMC3Q9Y6N6 1575 aa12.22□□□□□ -0.45
CDK12-207ENST00000581963 MROH2BQ7Z745 1585 aa12.18□□□□□ -0.46
CDK12-207ENST00000581963 PDS5BQ9NTI5 1447 aa12.1□□□□□ -0.47
CDK12-207ENST00000581963 WIZO95785 1651 aa12.06□□□□□ -0.48
CDK12-207ENST00000581963 WDR62O43379 1518 aa12.05□□□□□ -0.48
CDK12-207ENST00000581963 MRC2Q9UBG0 1479 aa12.04□□□□□ -0.48
CDK12-207ENST00000581963 CADPSQ9ULU8 1353 aa12.04□□□□□ -0.48
CDK12-207ENST00000581963 CEP164Q9UPV0 1460 aa11.95□□□□□ -0.5
CDK12-207ENST00000581963 TRIM41Q8WV44 630 aa11.95□□□□□ -0.5
CDK12-207ENST00000581963 FANCD2Q9BXW9 1451 aa11.93□□□□□ -0.5
CDK12-207ENST00000581963 PRDM2Q13029 1718 aa11.91□□□□□ -0.5
CDK12-207ENST00000581963 CFTRP13569 1480 aa11.89□□□□□ -0.51
CDK12-207ENST00000581963 TOP2AP11388 1531 aaKnown RBP11.87□□□□□ -0.51
CDK12-207ENST00000581963 URB2Q14146 1524 aaKnown RBP11.87□□□□□ -0.51
CDK12-207ENST00000581963 RSF1Q96T23 1441 aaPredicted RBP11.84□□□□□ -0.51
CDK12-207ENST00000581963 OSCARQ8IYS5 282 aa11.79□□□□□ -0.52
CDK12-207ENST00000581963 RIMBP3CA6NJZ7 1639 aa11.78□□□□□ -0.52
CDK12-207ENST00000581963 RIMBP3BA6NNM3 1639 aa11.78□□□□□ -0.52
CDK12-207ENST00000581963 RIMBP3Q9UFD9 1639 aa11.78□□□□□ -0.52
CDK12-207ENST00000581963 ZNF608Q9ULD9 1512 aaPredicted RBP11.74□□□□□ -0.53
CDK12-207ENST00000581963 IFT140Q96RY7 1462 aa11.71□□□□□ -0.53
CDK12-207ENST00000581963 EIF4G3O43432 1585 aaKnown RBP11.71□□□□□ -0.54
CDK12-207ENST00000581963 TOPBP1Q92547 1522 aa11.7□□□□□ -0.54
CDK12-207ENST00000581963 CCDC88BA6NC98 1476 aa11.7□□□□□ -0.54
CDK12-207ENST00000581963 AEBP2Q6ZN18 517 aaPredicted RBP11.7□□□□□ -0.54
CDK12-207ENST00000581963 ARHGEF11O15085 1522 aa11.7□□□□□ -0.54
CDK12-207ENST00000581963 CHD1O14646 1710 aa11.69□□□□□ -0.54
CDK12-207ENST00000581963 DNMBPQ6XZF7 1577 aa11.67□□□□□ -0.54
CDK12-207ENST00000581963 TARBP1Q13395 1621 aaKnown RBP11.65□□□□□ -0.54
CDK12-207ENST00000581963 ABCC8Q09428 1581 aa11.62□□□□□ -0.55
CDK12-207ENST00000581963 AQRO60306 1485 aaKnown RBP eCLIP11.58□□□□□ -0.56
CDK12-207ENST00000581963 POLA1P09884 1462 aaPredicted RBP11.57□□□□□ -0.56
CDK12-207ENST00000581963 ARAP1Q96P48 1450 aa11.57□□□□□ -0.56
CDK12-207ENST00000581963 CYB5RLQ6IPT4 315 aa11.53□□□□□ -0.56
CDK12-207ENST00000581963 RAD54L2Q9Y4B4 1467 aa11.52□□□□□ -0.56
CDK12-207ENST00000581963 WDR97A6NE52 1622 aa11.5□□□□□ -0.57
CDK12-207ENST00000581963 CLASP1Q7Z460 1538 aa11.5□□□□□ -0.57
CDK12-207ENST00000581963 FBLN2P98095 1184 aa11.48□□□□□ -0.57
CDK12-207ENST00000581963 SNAPC4Q5SXM2 1469 aa11.48□□□□□ -0.57
CDK12-207ENST00000581963 FGD5Q6ZNL6 1462 aa11.48□□□□□ -0.57
CDK12-207ENST00000581963 TDRD9Q8NDG6 1382 aaKnown RBP11.47□□□□□ -0.57
CDK12-207ENST00000581963 SOGA1O94964 1423 aa11.46□□□□□ -0.57
CDK12-207ENST00000581963 PBRM1Q86U86 1689 aa11.46□□□□□ -0.58
CDK12-207ENST00000581963 SYNJ1O43426 1573 aa11.45□□□□□ -0.58
CDK12-207ENST00000581963 CUX1P39880 1505 aa11.45□□□□□ -0.58
CDK12-207ENST00000581963 TRHP20396 242 aaPredicted RBP11.44□□□□□ -0.58
CDK12-207ENST00000581963 MAGI1Q96QZ7 1491 aaPredicted RBP11.44□□□□□ -0.58
CDK12-207ENST00000581963 GRIN2BQ13224 1484 aa11.41□□□□□ -0.58
CDK12-207ENST00000581963 SYNJ2O15056 1496 aa11.4□□□□□ -0.58
CDK12-207ENST00000581963 ABCA5Q8WWZ7 1642 aa11.38□□□□□ -0.59
CDK12-207ENST00000581963 CHMP7Q8WUX9 453 aaPredicted RBP11.37□□□□□ -0.59
CDK12-207ENST00000581963 GAPVD1Q14C86 1478 aa11.35□□□□□ -0.59
CDK12-207ENST00000581963 ABCA10Q8WWZ4 1543 aa11.33□□□□□ -0.6
CDK12-207ENST00000581963 ERCC6L2Q5T890 1561 aa11.32□□□□□ -0.6
CDK12-207ENST00000581963 ADAMTS12P58397 1594 aa11.29□□□□□ -0.6
CDK12-207ENST00000581963 CEP170Q5SW79 1584 aa11.28□□□□□ -0.6
CDK12-207ENST00000581963 GRIN2AQ12879 1464 aa11.28□□□□□ -0.6
CDK12-207ENST00000581963 SHROOM2Q13796 1616 aa11.27□□□□□ -0.6
CDK12-207ENST00000581963 BIVM-ERCC5R4GMW8 1640 aa11.27□□□□□ -0.6
CDK12-207ENST00000581963 KIF13AQ9H1H9 1805 aa11.25□□□□□ -0.61
CDK12-207ENST00000581963 NUP160Q12769 1436 aa11.25□□□□□ -0.61
CDK12-207ENST00000581963 TOP2BQ02880 1626 aa11.24□□□□□ -0.61
CDK12-207ENST00000581963 WRNQ14191 1432 aaPredicted RBP eCLIP11.21□□□□□ -0.61
CDK12-207ENST00000581963 ERICH3Q5RHP9 1530 aa11.19□□□□□ -0.62
CDK12-207ENST00000581963 FHAD1B1AJZ9 1412 aa11.18□□□□□ -0.62
CDK12-207ENST00000581963 RUSC2Q8N2Y8 1516 aa11.15□□□□□ -0.62
CDK12-207ENST00000581963 SUPT5HO00267 1087 aaKnown RBP11.13□□□□□ -0.63
CDK12-207ENST00000581963 PRG4Q92954 1404 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms