RNA–Protein interactions for RNA: ENST00000581835.1

PPP4R1-220, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 2

Gene PPP4R1, Length 379 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-220ENST00000581835 NISCHQ9Y2I1 1504 aa25.16■■□□□ 1.62
PPP4R1-220ENST00000581835 CCDC180Q9P1Z9 1646 aa22.42■■□□□ 1.18
PPP4R1-220ENST00000581835 ABCC9O60706 1549 aa22.03■■□□□ 1.12
PPP4R1-220ENST00000581835 RB1CC1Q8TDY2 1594 aa21.14■□□□□ 0.98
PPP4R1-220ENST00000581835 NACADO15069 1562 aa21.1■□□□□ 0.97
PPP4R1-220ENST00000581835 DCAF8L2P0C7V8 631 aa21.06■□□□□ 0.96
PPP4R1-220ENST00000581835 MYO15BQ96JP2 1530 aa20.94■□□□□ 0.94
PPP4R1-220ENST00000581835 ZCCHC6Q5VYS8 1495 aaKnown RBP20.93■□□□□ 0.94
PPP4R1-220ENST00000581835 DCAF1Q9Y4B6 1507 aa20.81■□□□□ 0.92
PPP4R1-220ENST00000581835 UNC13AQ9UPW8 1703 aa20.72■□□□□ 0.91
PPP4R1-220ENST00000581835 PABPN1Q86U42 306 aaKnown RBP eCLIP20.58■□□□□ 0.89
PPP4R1-220ENST00000581835 BICRAQ9NZM4 1560 aa20.53■□□□□ 0.88
PPP4R1-220ENST00000581835 SCRIBQ14160 1630 aa20.43■□□□□ 0.86
PPP4R1-220ENST00000581835 DNAJC5BQ9UF47 199 aa20.35■□□□□ 0.85
PPP4R1-220ENST00000581835 SHROOM4Q9ULL8 1493 aa20.27■□□□□ 0.84
PPP4R1-220ENST00000581835 EIF4G1Q04637 1599 aaKnown RBP19.99■□□□□ 0.79
PPP4R1-220ENST00000581835 CC2D2AQ9P2K1 1620 aa19.93■□□□□ 0.78
PPP4R1-220ENST00000581835 CECR2Q9BXF3 1484 aa19.8■□□□□ 0.76
PPP4R1-220ENST00000581835 SMARCA4P51532 1647 aa19.54■□□□□ 0.72
PPP4R1-220ENST00000581835 BAZ1AQ9NRL2 1556 aaPredicted RBP19.49■□□□□ 0.71
PPP4R1-220ENST00000581835 NCAPD3P42695 1498 aa19.48■□□□□ 0.71
PPP4R1-220ENST00000581835 ATAD2BQ9ULI0 1458 aa19.47■□□□□ 0.71
PPP4R1-220ENST00000581835 SMARCA2P51531 1590 aa19.43■□□□□ 0.7
PPP4R1-220ENST00000581835 MROH2BQ7Z745 1585 aa19.39■□□□□ 0.69
PPP4R1-220ENST00000581835 PEG3Q9GZU2 1588 aa19.36■□□□□ 0.69
PPP4R1-220ENST00000581835 HMGXB3Q12766 1538 aa19.35■□□□□ 0.69
PPP4R1-220ENST00000581835 BAZ1BQ9UIG0 1483 aaKnown RBP19.28■□□□□ 0.68
PPP4R1-220ENST00000581835 WIZO95785 1651 aa19.19■□□□□ 0.66
PPP4R1-220ENST00000581835 RSF1Q96T23 1441 aaPredicted RBP19.13■□□□□ 0.65
PPP4R1-220ENST00000581835 NESP48681 1621 aa19.05■□□□□ 0.64
PPP4R1-220ENST00000581835 ERCC6Q03468 1493 aa18.98■□□□□ 0.63
PPP4R1-220ENST00000581835 LAMC3Q9Y6N6 1575 aa18.98■□□□□ 0.63
PPP4R1-220ENST00000581835 TOP2AP11388 1531 aaKnown RBP18.95■□□□□ 0.62
PPP4R1-220ENST00000581835 CADPSQ9ULU8 1353 aa18.9■□□□□ 0.62
PPP4R1-220ENST00000581835 PDS5BQ9NTI5 1447 aa18.84■□□□□ 0.61
PPP4R1-220ENST00000581835 CUX2O14529 1486 aa18.84■□□□□ 0.61
PPP4R1-220ENST00000581835 KIF21AQ7Z4S6 1674 aa18.83■□□□□ 0.61
PPP4R1-220ENST00000581835 THOC2Q8NI27 1593 aaKnown RBP18.77■□□□□ 0.6
PPP4R1-220ENST00000581835 CFTRP13569 1480 aa18.77■□□□□ 0.59
PPP4R1-220ENST00000581835 CCDC88BA6NC98 1476 aa18.74■□□□□ 0.59
PPP4R1-220ENST00000581835 FANCD2Q9BXW9 1451 aa18.67■□□□□ 0.58
PPP4R1-220ENST00000581835 MRC2Q9UBG0 1479 aa18.65■□□□□ 0.58
PPP4R1-220ENST00000581835 CEP164Q9UPV0 1460 aa18.65■□□□□ 0.58
PPP4R1-220ENST00000581835 PRDM2Q13029 1718 aa18.64■□□□□ 0.57
PPP4R1-220ENST00000581835 WDR62O43379 1518 aa18.6■□□□□ 0.57
PPP4R1-220ENST00000581835 SUPT5HO00267 1087 aaKnown RBP18.56■□□□□ 0.56
PPP4R1-220ENST00000581835 URB2Q14146 1524 aaKnown RBP18.5■□□□□ 0.55
PPP4R1-220ENST00000581835 DNAJC5Q9H3Z4 198 aa18.41■□□□□ 0.54
PPP4R1-220ENST00000581835 TOPBP1Q92547 1522 aa18.37■□□□□ 0.53
PPP4R1-220ENST00000581835 ABCC8Q09428 1581 aa18.36■□□□□ 0.53
PPP4R1-220ENST00000581835 DNMBPQ6XZF7 1577 aa18.34■□□□□ 0.53
PPP4R1-220ENST00000581835 IFT140Q96RY7 1462 aa18.27■□□□□ 0.52
PPP4R1-220ENST00000581835 ZNF608Q9ULD9 1512 aaPredicted RBP18.21■□□□□ 0.51
PPP4R1-220ENST00000581835 POLA1P09884 1462 aaPredicted RBP18.2■□□□□ 0.5
PPP4R1-220ENST00000581835 CUX1P39880 1505 aa18.19■□□□□ 0.5
PPP4R1-220ENST00000581835 TARBP1Q13395 1621 aaKnown RBP18.19■□□□□ 0.5
PPP4R1-220ENST00000581835 FGD5Q6ZNL6 1462 aa18.14■□□□□ 0.5
PPP4R1-220ENST00000581835 RAD54L2Q9Y4B4 1467 aa18.14■□□□□ 0.49
PPP4R1-220ENST00000581835 SOGA1O94964 1423 aa18.13■□□□□ 0.49
PPP4R1-220ENST00000581835 EIF4G3O43432 1585 aaKnown RBP18.13■□□□□ 0.49
PPP4R1-220ENST00000581835 AQRO60306 1485 aaKnown RBP eCLIP18.1■□□□□ 0.497e-12■□□□□ 9.9
PPP4R1-220ENST00000581835 OSCARQ8IYS5 282 aa18.05■□□□□ 0.48
PPP4R1-220ENST00000581835 TDRD9Q8NDG6 1382 aaKnown RBP18.04■□□□□ 0.48
PPP4R1-220ENST00000581835 WRNQ14191 1432 aaPredicted RBP eCLIP18.03■□□□□ 0.48
PPP4R1-220ENST00000581835 WDR97A6NE52 1622 aa18.02■□□□□ 0.48
PPP4R1-220ENST00000581835 BIVM-ERCC5R4GMW8 1640 aa18.01■□□□□ 0.47
PPP4R1-220ENST00000581835 TOP2BQ02880 1626 aa18.01■□□□□ 0.47
PPP4R1-220ENST00000581835 SYNJ1O43426 1573 aa18■□□□□ 0.47
PPP4R1-220ENST00000581835 ABCA10Q8WWZ4 1543 aa17.97■□□□□ 0.47
PPP4R1-220ENST00000581835 CHD1O14646 1710 aa17.95■□□□□ 0.46
PPP4R1-220ENST00000581835 GRIN2BQ13224 1484 aa17.92■□□□□ 0.46
PPP4R1-220ENST00000581835 GAPVD1Q14C86 1478 aa17.91■□□□□ 0.46
PPP4R1-220ENST00000581835 SNAPC4Q5SXM2 1469 aa17.91■□□□□ 0.46
PPP4R1-220ENST00000581835 ABCA5Q8WWZ7 1642 aa17.9■□□□□ 0.46
PPP4R1-220ENST00000581835 PBRM1Q86U86 1689 aa17.9■□□□□ 0.46
PPP4R1-220ENST00000581835 FBLN2P98095 1184 aa17.89■□□□□ 0.45
PPP4R1-220ENST00000581835 MAGI1Q96QZ7 1491 aaPredicted RBP17.88■□□□□ 0.45
PPP4R1-220ENST00000581835 CHMP7Q8WUX9 453 aaPredicted RBP17.83■□□□□ 0.44
PPP4R1-220ENST00000581835 SYNJ2O15056 1496 aa17.82■□□□□ 0.44
PPP4R1-220ENST00000581835 RIMBP3CA6NJZ7 1639 aa17.77■□□□□ 0.44
PPP4R1-220ENST00000581835 RIMBP3BA6NNM3 1639 aa17.77■□□□□ 0.44
PPP4R1-220ENST00000581835 RIMBP3Q9UFD9 1639 aa17.77■□□□□ 0.44
PPP4R1-220ENST00000581835 ARHGEF11O15085 1522 aa17.75■□□□□ 0.43
PPP4R1-220ENST00000581835 ERICH3Q5RHP9 1530 aa17.74■□□□□ 0.43
PPP4R1-220ENST00000581835 TRIM41Q8WV44 630 aa17.74■□□□□ 0.43
PPP4R1-220ENST00000581835 ADAMTS12P58397 1594 aa17.74■□□□□ 0.43
PPP4R1-220ENST00000581835 CLASP1Q7Z460 1538 aa17.72■□□□□ 0.43
PPP4R1-220ENST00000581835 FHAD1B1AJZ9 1412 aa17.7■□□□□ 0.42
PPP4R1-220ENST00000581835 GRIN2AQ12879 1464 aa17.69■□□□□ 0.42
PPP4R1-220ENST00000581835 KIF27Q86VH2 1401 aa17.65■□□□□ 0.42
PPP4R1-220ENST00000581835 NUP160Q12769 1436 aa17.63■□□□□ 0.41
PPP4R1-220ENST00000581835 CEP170Q5SW79 1584 aa17.62■□□□□ 0.41
PPP4R1-220ENST00000581835 IGF1RP08069 1367 aa17.62■□□□□ 0.41
PPP4R1-220ENST00000581835 CYB5RLQ6IPT4 315 aa17.6■□□□□ 0.41
PPP4R1-220ENST00000581835 ARAP1Q96P48 1450 aa17.6■□□□□ 0.41
PPP4R1-220ENST00000581835 CUL7Q14999 1698 aa17.56■□□□□ 0.4
PPP4R1-220ENST00000581835 SHROOM2Q13796 1616 aa17.51■□□□□ 0.39
PPP4R1-220ENST00000581835 CARMIL1Q5VZK9 1371 aa17.51■□□□□ 0.39
PPP4R1-220ENST00000581835 RUSC2Q8N2Y8 1516 aa17.49■□□□□ 0.39
PPP4R1-220ENST00000581835 ERCC6L2Q5T890 1561 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms