RNA–Protein interactions for RNA: ENST00000581707.1

SREBF1-220, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 695 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-220ENST00000581707 NISCHQ9Y2I1 1504 aa47.84■■■■■ 5.25
SREBF1-220ENST00000581707 CCDC180Q9P1Z9 1646 aa42.65■■■■■ 4.42
SREBF1-220ENST00000581707 ABCC9O60706 1549 aa42.09■■■■■ 4.33
SREBF1-220ENST00000581707 RB1CC1Q8TDY2 1594 aa40.33■■■■■ 4.05
SREBF1-220ENST00000581707 NACADO15069 1562 aa40.2■■■■■ 4.03
SREBF1-220ENST00000581707 DCAF8L2P0C7V8 631 aa40.19■■■■■ 4.02
SREBF1-220ENST00000581707 MYO15BQ96JP2 1530 aa39.83■■■■□ 3.97
SREBF1-220ENST00000581707 ZCCHC6Q5VYS8 1495 aaKnown RBP39.76■■■■□ 3.96
SREBF1-220ENST00000581707 DCAF1Q9Y4B6 1507 aa39.55■■■■□ 3.92
SREBF1-220ENST00000581707 UNC13AQ9UPW8 1703 aa39.41■■■■□ 3.9
SREBF1-220ENST00000581707 PABPN1Q86U42 306 aaKnown RBP eCLIP39.31■■■■□ 3.88
SREBF1-220ENST00000581707 BICRAQ9NZM4 1560 aa39.12■■■■□ 3.85
SREBF1-220ENST00000581707 DNAJC5BQ9UF47 199 aa38.95■■■■□ 3.83
SREBF1-220ENST00000581707 SCRIBQ14160 1630 aa38.92■■■■□ 3.82
SREBF1-220ENST00000581707 SHROOM4Q9ULL8 1493 aa38.64■■■■□ 3.78
SREBF1-220ENST00000581707 EIF4G1Q04637 1599 aaKnown RBP38.1■■■■□ 3.69
SREBF1-220ENST00000581707 CC2D2AQ9P2K1 1620 aa38.05■■■■□ 3.68
SREBF1-220ENST00000581707 CECR2Q9BXF3 1484 aa37.84■■■■□ 3.65
SREBF1-220ENST00000581707 SMARCA4P51532 1647 aa37.18■■■■□ 3.54
SREBF1-220ENST00000581707 NCAPD3P42695 1498 aa37.11■■■■□ 3.53
SREBF1-220ENST00000581707 BAZ1AQ9NRL2 1556 aaPredicted RBP37.09■■■■□ 3.53
SREBF1-220ENST00000581707 ATAD2BQ9ULI0 1458 aa37.07■■■■□ 3.53
SREBF1-220ENST00000581707 SMARCA2P51531 1590 aa37.01■■■■□ 3.52
SREBF1-220ENST00000581707 HMGXB3Q12766 1538 aa36.87■■■■□ 3.49
SREBF1-220ENST00000581707 MROH2BQ7Z745 1585 aa36.87■■■■□ 3.49
SREBF1-220ENST00000581707 PEG3Q9GZU2 1588 aa36.81■■■■□ 3.48
SREBF1-220ENST00000581707 BAZ1BQ9UIG0 1483 aaKnown RBP36.75■■■■□ 3.47
SREBF1-220ENST00000581707 WIZO95785 1651 aa36.46■■■■□ 3.43
SREBF1-220ENST00000581707 RSF1Q96T23 1441 aaPredicted RBP36.34■■■■□ 3.41
SREBF1-220ENST00000581707 NESP48681 1621 aa36.32■■■■□ 3.4
SREBF1-220ENST00000581707 ERCC6Q03468 1493 aa36.31■■■■□ 3.4
SREBF1-220ENST00000581707 LAMC3Q9Y6N6 1575 aa36.17■■■■□ 3.38
SREBF1-220ENST00000581707 TOP2AP11388 1531 aaKnown RBP36.03■■■■□ 3.36
SREBF1-220ENST00000581707 CUX2O14529 1486 aa36.02■■■■□ 3.36
SREBF1-220ENST00000581707 CADPSQ9ULU8 1353 aa36.02■■■■□ 3.36
SREBF1-220ENST00000581707 PDS5BQ9NTI5 1447 aa35.96■■■■□ 3.35
SREBF1-220ENST00000581707 KIF21AQ7Z4S6 1674 aa35.88■■■■□ 3.33
SREBF1-220ENST00000581707 THOC2Q8NI27 1593 aaKnown RBP35.81■■■■□ 3.32
SREBF1-220ENST00000581707 CFTRP13569 1480 aa35.73■■■■□ 3.31
SREBF1-220ENST00000581707 CCDC88BA6NC98 1476 aa35.64■■■■□ 3.3
SREBF1-220ENST00000581707 FANCD2Q9BXW9 1451 aa35.6■■■■□ 3.29
SREBF1-220ENST00000581707 MRC2Q9UBG0 1479 aa35.59■■■■□ 3.29
SREBF1-220ENST00000581707 CEP164Q9UPV0 1460 aa35.58■■■■□ 3.29
SREBF1-220ENST00000581707 WDR62O43379 1518 aa35.47■■■■□ 3.27
SREBF1-220ENST00000581707 PRDM2Q13029 1718 aa35.42■■■■□ 3.26
SREBF1-220ENST00000581707 DNAJC5Q9H3Z4 198 aa35.34■■■■□ 3.25
SREBF1-220ENST00000581707 URB2Q14146 1524 aaKnown RBP35.26■■■■□ 3.23
SREBF1-220ENST00000581707 SUPT5HO00267 1087 aaKnown RBP35.23■■■■□ 3.23
SREBF1-220ENST00000581707 TOPBP1Q92547 1522 aa34.99■■■■□ 3.19
SREBF1-220ENST00000581707 ABCC8Q09428 1581 aa34.97■■■■□ 3.19
SREBF1-220ENST00000581707 DNMBPQ6XZF7 1577 aa34.91■■■■□ 3.18
SREBF1-220ENST00000581707 IFT140Q96RY7 1462 aa34.84■■■■□ 3.17
SREBF1-220ENST00000581707 ZNF608Q9ULD9 1512 aaPredicted RBP34.72■■■■□ 3.15
SREBF1-220ENST00000581707 POLA1P09884 1462 aaPredicted RBP34.66■■■■□ 3.14
SREBF1-220ENST00000581707 TARBP1Q13395 1621 aaKnown RBP34.63■■■■□ 3.13
SREBF1-220ENST00000581707 CUX1P39880 1505 aa34.6■■■■□ 3.13
SREBF1-220ENST00000581707 SOGA1O94964 1423 aa34.55■■■■□ 3.12
SREBF1-220ENST00000581707 EIF4G3O43432 1585 aaKnown RBP34.55■■■■□ 3.12
SREBF1-220ENST00000581707 FGD5Q6ZNL6 1462 aa34.53■■■■□ 3.12
SREBF1-220ENST00000581707 RAD54L2Q9Y4B4 1467 aa34.53■■■■□ 3.12
SREBF1-220ENST00000581707 OSCARQ8IYS5 282 aa34.52■■■■□ 3.12
SREBF1-220ENST00000581707 AQRO60306 1485 aaKnown RBP eCLIP34.51■■■■□ 3.115e-9■■■■□ 19.3
SREBF1-220ENST00000581707 TDRD9Q8NDG6 1382 aaKnown RBP34.39■■■■□ 3.1
SREBF1-220ENST00000581707 WDR97A6NE52 1622 aa34.31■■■■□ 3.08
SREBF1-220ENST00000581707 WRNQ14191 1432 aaPredicted RBP eCLIP34.27■■■■□ 3.08
SREBF1-220ENST00000581707 TOP2BQ02880 1626 aa34.22■■■■□ 3.07
SREBF1-220ENST00000581707 BIVM-ERCC5R4GMW8 1640 aa34.21■■■■□ 3.07
SREBF1-220ENST00000581707 FBLN2P98095 1184 aa34.2■■■■□ 3.07
SREBF1-220ENST00000581707 CHD1O14646 1710 aa34.2■■■■□ 3.07
SREBF1-220ENST00000581707 ABCA10Q8WWZ4 1543 aa34.19■■■■□ 3.06
SREBF1-220ENST00000581707 SYNJ1O43426 1573 aa34.19■■■■□ 3.06
SREBF1-220ENST00000581707 GRIN2BQ13224 1484 aa34.17■■■■□ 3.06
SREBF1-220ENST00000581707 SNAPC4Q5SXM2 1469 aa34.15■■■■□ 3.06
SREBF1-220ENST00000581707 GAPVD1Q14C86 1478 aa34.14■■■■□ 3.06
SREBF1-220ENST00000581707 MAGI1Q96QZ7 1491 aaPredicted RBP34.1■■■■□ 3.05
SREBF1-220ENST00000581707 ABCA5Q8WWZ7 1642 aa34.07■■■■□ 3.04
SREBF1-220ENST00000581707 PBRM1Q86U86 1689 aa34.06■■■■□ 3.04
SREBF1-220ENST00000581707 TRIM41Q8WV44 630 aa34.05■■■■□ 3.04
SREBF1-220ENST00000581707 CHMP7Q8WUX9 453 aaPredicted RBP34.04■■■■□ 3.04
SREBF1-220ENST00000581707 SYNJ2O15056 1496 aa33.97■■■■□ 3.03
SREBF1-220ENST00000581707 RIMBP3CA6NJZ7 1639 aa33.96■■■■□ 3.03
SREBF1-220ENST00000581707 RIMBP3BA6NNM3 1639 aa33.96■■■■□ 3.03
SREBF1-220ENST00000581707 RIMBP3Q9UFD9 1639 aa33.96■■■■□ 3.03
SREBF1-220ENST00000581707 ARHGEF11O15085 1522 aa33.92■■■■□ 3.02
SREBF1-220ENST00000581707 CLASP1Q7Z460 1538 aa33.8■■■■□ 3
SREBF1-220ENST00000581707 ERICH3Q5RHP9 1530 aa33.77■■■■□ 3
SREBF1-220ENST00000581707 ADAMTS12P58397 1594 aa33.76■■■□□ 2.99
SREBF1-220ENST00000581707 FHAD1B1AJZ9 1412 aa33.72■■■□□ 2.99
SREBF1-220ENST00000581707 GRIN2AQ12879 1464 aa33.72■■■□□ 2.99
SREBF1-220ENST00000581707 CYB5RLQ6IPT4 315 aa33.68■■■□□ 2.98
SREBF1-220ENST00000581707 ARAP1Q96P48 1450 aa33.62■■■□□ 2.97
SREBF1-220ENST00000581707 KIF27Q86VH2 1401 aa33.59■■■□□ 2.97
SREBF1-220ENST00000581707 NUP160Q12769 1436 aa33.57■■■□□ 2.96
SREBF1-220ENST00000581707 CEP170Q5SW79 1584 aa33.56■■■□□ 2.96
SREBF1-220ENST00000581707 IGF1RP08069 1367 aa33.5■■■□□ 2.95
SREBF1-220ENST00000581707 CUL7Q14999 1698 aa33.39■■■□□ 2.94
SREBF1-220ENST00000581707 SHROOM2Q13796 1616 aa33.35■■■□□ 2.93
SREBF1-220ENST00000581707 ERCC6L2Q5T890 1561 aa33.33■■■□□ 2.93
SREBF1-220ENST00000581707 CARMIL1Q5VZK9 1371 aa33.3■■■□□ 2.92
SREBF1-220ENST00000581707 JPH4Q96JJ6 628 aa33.28■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms