RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 NISCHQ9Y2I1 1504 aa32.41■■■□□ 2.78
SS18-219ENST00000581570 ABCC9O60706 1549 aa29.73■■■□□ 2.35
SS18-219ENST00000581570 CCDC180Q9P1Z9 1646 aa29.18■■■□□ 2.26
SS18-219ENST00000581570 DNAJC5BQ9UF47 199 aa28.33■■■□□ 2.13
SS18-219ENST00000581570 RB1CC1Q8TDY2 1594 aa28.06■■■□□ 2.08
SS18-219ENST00000581570 NACADO15069 1562 aa27.77■■■□□ 2.04
SS18-219ENST00000581570 DCAF8L2P0C7V8 631 aa27.69■■■□□ 2.02
SS18-219ENST00000581570 PABPN1Q86U42 306 aaKnown RBP eCLIP27.68■■■□□ 2.02
SS18-219ENST00000581570 UNC13AQ9UPW8 1703 aa27.3■■□□□ 1.96
SS18-219ENST00000581570 BICRAQ9NZM4 1560 aa27.23■■□□□ 1.95
SS18-219ENST00000581570 MYO15BQ96JP2 1530 aa27.23■■□□□ 1.95
SS18-219ENST00000581570 SHROOM4Q9ULL8 1493 aa26.83■■□□□ 1.89
SS18-219ENST00000581570 CECR2Q9BXF3 1484 aa26.82■■□□□ 1.88
SS18-219ENST00000581570 CC2D2AQ9P2K1 1620 aa26.78■■□□□ 1.88
SS18-219ENST00000581570 ZCCHC6Q5VYS8 1495 aaKnown RBP26.75■■□□□ 1.87
SS18-219ENST00000581570 DCAF1Q9Y4B6 1507 aa26.72■■□□□ 1.87
SS18-219ENST00000581570 SCRIBQ14160 1630 aa26.62■■□□□ 1.85
SS18-219ENST00000581570 EIF4G1Q04637 1599 aaKnown RBP26.62■■□□□ 1.85
SS18-219ENST00000581570 DNAJC5Q9H3Z4 198 aa26.34■■□□□ 1.81
SS18-219ENST00000581570 AEBP2Q6ZN18 517 aaPredicted RBP25.91■■□□□ 1.74
SS18-219ENST00000581570 CUX2O14529 1486 aa25.78■■□□□ 1.72
SS18-219ENST00000581570 ERCC6Q03468 1493 aa25.71■■□□□ 1.71
SS18-219ENST00000581570 NCAPD3P42695 1498 aa25.68■■□□□ 1.7
SS18-219ENST00000581570 ATAD2BQ9ULI0 1458 aa25.53■■□□□ 1.68
SS18-219ENST00000581570 SMARCA2P51531 1590 aa25.4■■□□□ 1.66
SS18-219ENST00000581570 NESP48681 1621 aa25.4■■□□□ 1.66
SS18-219ENST00000581570 HMGXB3Q12766 1538 aa25.38■■□□□ 1.65
SS18-219ENST00000581570 SMARCA4P51532 1647 aa25.34■■□□□ 1.65
SS18-219ENST00000581570 BAZ1BQ9UIG0 1483 aaKnown RBP25.25■■□□□ 1.63
SS18-219ENST00000581570 CHIC1Q5VXU3 224 aa25.2■■□□□ 1.62
SS18-219ENST00000581570 BAZ1AQ9NRL2 1556 aaPredicted RBP25.18■■□□□ 1.62
SS18-219ENST00000581570 THOC2Q8NI27 1593 aaKnown RBP25.15■■□□□ 1.62
SS18-219ENST00000581570 LAMC3Q9Y6N6 1575 aa25.12■■□□□ 1.61
SS18-219ENST00000581570 PEG3Q9GZU2 1588 aa25.09■■□□□ 1.61
SS18-219ENST00000581570 PDS5BQ9NTI5 1447 aa25.06■■□□□ 1.6
SS18-219ENST00000581570 TRIM41Q8WV44 630 aa25.03■■□□□ 1.6
SS18-219ENST00000581570 MROH2BQ7Z745 1585 aa24.97■■□□□ 1.59
SS18-219ENST00000581570 KIF21AQ7Z4S6 1674 aa24.96■■□□□ 1.59
SS18-219ENST00000581570 CADPSQ9ULU8 1353 aa24.91■■□□□ 1.58
SS18-219ENST00000581570 MRC2Q9UBG0 1479 aa24.83■■□□□ 1.57
SS18-219ENST00000581570 WDR62O43379 1518 aa24.75■■□□□ 1.55
SS18-219ENST00000581570 CEP164Q9UPV0 1460 aa24.64■■□□□ 1.54
SS18-219ENST00000581570 OSCARQ8IYS5 282 aa24.63■■□□□ 1.53
SS18-219ENST00000581570 WIZO95785 1651 aa24.62■■□□□ 1.53
SS18-219ENST00000581570 FANCD2Q9BXW9 1451 aa24.59■■□□□ 1.53
SS18-219ENST00000581570 CFTRP13569 1480 aa24.5■■□□□ 1.51
SS18-219ENST00000581570 URB2Q14146 1524 aaKnown RBP24.4■■□□□ 1.5
SS18-219ENST00000581570 RSF1Q96T23 1441 aaPredicted RBP24.34■■□□□ 1.49
SS18-219ENST00000581570 TOP2AP11388 1531 aaKnown RBP24.29■■□□□ 1.48
SS18-219ENST00000581570 RIMBP3CA6NJZ7 1639 aa24.22■■□□□ 1.47
SS18-219ENST00000581570 RIMBP3BA6NNM3 1639 aa24.22■■□□□ 1.47
SS18-219ENST00000581570 RIMBP3Q9UFD9 1639 aa24.22■■□□□ 1.47
SS18-219ENST00000581570 ZNF608Q9ULD9 1512 aaPredicted RBP24.19■■□□□ 1.46
SS18-219ENST00000581570 IFT140Q96RY7 1462 aa24.19■■□□□ 1.46
SS18-219ENST00000581570 ARHGEF11O15085 1522 aa24.13■■□□□ 1.45
SS18-219ENST00000581570 CYB5RLQ6IPT4 315 aa24.08■■□□□ 1.45
SS18-219ENST00000581570 CCDC88BA6NC98 1476 aa24.07■■□□□ 1.44
SS18-219ENST00000581570 TOPBP1Q92547 1522 aa24.06■■□□□ 1.44
SS18-219ENST00000581570 PRDM2Q13029 1718 aa24.04■■□□□ 1.44
SS18-219ENST00000581570 ABCC8Q09428 1581 aa24■■□□□ 1.43
SS18-219ENST00000581570 TRHP20396 242 aaPredicted RBP23.97■■□□□ 1.43
SS18-219ENST00000581570 EIF4G3O43432 1585 aaKnown RBP23.96■■□□□ 1.43
SS18-219ENST00000581570 AQRO60306 1485 aaKnown RBP eCLIP23.94■■□□□ 1.425e-6■■■□□ 16.9
SS18-219ENST00000581570 FBLN2P98095 1184 aa23.94■■□□□ 1.42
SS18-219ENST00000581570 DNMBPQ6XZF7 1577 aa23.91■■□□□ 1.42
SS18-219ENST00000581570 ARAP1Q96P48 1450 aa23.87■■□□□ 1.41
SS18-219ENST00000581570 TARBP1Q13395 1621 aaKnown RBP23.84■■□□□ 1.41
SS18-219ENST00000581570 CHD1O14646 1710 aa23.83■■□□□ 1.41
SS18-219ENST00000581570 POLA1P09884 1462 aaPredicted RBP23.79■■□□□ 1.4
SS18-219ENST00000581570 TDRD9Q8NDG6 1382 aaKnown RBP23.75■■□□□ 1.39
SS18-219ENST00000581570 RAD54L2Q9Y4B4 1467 aa23.75■■□□□ 1.39
SS18-219ENST00000581570 SOGA1O94964 1423 aa23.73■■□□□ 1.39
SS18-219ENST00000581570 CHMP7Q8WUX9 453 aaPredicted RBP23.68■■□□□ 1.38
SS18-219ENST00000581570 SNAPC4Q5SXM2 1469 aa23.65■■□□□ 1.38
SS18-219ENST00000581570 CLASP1Q7Z460 1538 aa23.6■■□□□ 1.37
SS18-219ENST00000581570 FGD5Q6ZNL6 1462 aa23.58■■□□□ 1.37
SS18-219ENST00000581570 SYNJ1O43426 1573 aa23.57■■□□□ 1.36
SS18-219ENST00000581570 MAGI1Q96QZ7 1491 aaPredicted RBP23.56■■□□□ 1.36
SS18-219ENST00000581570 WDR97A6NE52 1622 aa23.55■■□□□ 1.36
SS18-219ENST00000581570 GRIN2BQ13224 1484 aa23.54■■□□□ 1.36
SS18-219ENST00000581570 SYNJ2O15056 1496 aa23.49■■□□□ 1.35
SS18-219ENST00000581570 CUX1P39880 1505 aa23.49■■□□□ 1.35
SS18-219ENST00000581570 GAPVD1Q14C86 1478 aa23.43■■□□□ 1.34
SS18-219ENST00000581570 PBRM1Q86U86 1689 aa23.3■■□□□ 1.32
SS18-219ENST00000581570 ABCA10Q8WWZ4 1543 aa23.29■■□□□ 1.32
SS18-219ENST00000581570 ABCA5Q8WWZ7 1642 aa23.23■■□□□ 1.31
SS18-219ENST00000581570 GRIN2AQ12879 1464 aa23.22■■□□□ 1.31
SS18-219ENST00000581570 ERCC6L2Q5T890 1561 aa23.22■■□□□ 1.31
SS18-219ENST00000581570 NUP160Q12769 1436 aa23.16■■□□□ 1.3
SS18-219ENST00000581570 WRNQ14191 1432 aaPredicted RBP eCLIP23.15■■□□□ 1.3
SS18-219ENST00000581570 CEP170Q5SW79 1584 aa23.14■■□□□ 1.3
SS18-219ENST00000581570 ADAMTS12P58397 1594 aa23.1■■□□□ 1.29
SS18-219ENST00000581570 FHAD1B1AJZ9 1412 aa23.09■■□□□ 1.29
SS18-219ENST00000581570 SHROOM2Q13796 1616 aa23.04■■□□□ 1.28
SS18-219ENST00000581570 SUPT5HO00267 1087 aaKnown RBP23.02■■□□□ 1.28
SS18-219ENST00000581570 PRG4Q92954 1404 aaPredicted RBP23.01■■□□□ 1.27
SS18-219ENST00000581570 JPH4Q96JJ6 628 aa23.01■■□□□ 1.27
SS18-219ENST00000581570 ERICH3Q5RHP9 1530 aa22.98■■□□□ 1.27
SS18-219ENST00000581570 FAM69CQ0P6D2 419 aa22.96■■□□□ 1.27
SS18-219ENST00000581570 TOP2BQ02880 1626 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms