RNA–Protein interactions for RNA: ENST00000581514.1

SCN4A-202, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

TSL 3

Gene SCN4A, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-202ENST00000581514 NISCHQ9Y2I1 1504 aa37.41■■■■□ 3.58
SCN4A-202ENST00000581514 ABCC9O60706 1549 aa33.65■■■□□ 2.98
SCN4A-202ENST00000581514 CCDC180Q9P1Z9 1646 aa33.61■■■□□ 2.97
SCN4A-202ENST00000581514 RB1CC1Q8TDY2 1594 aa32.02■■■□□ 2.72
SCN4A-202ENST00000581514 NACADO15069 1562 aa31.78■■■□□ 2.68
SCN4A-202ENST00000581514 DNAJC5BQ9UF47 199 aa31.63■■■□□ 2.65
SCN4A-202ENST00000581514 DCAF8L2P0C7V8 631 aa31.57■■■□□ 2.64
SCN4A-202ENST00000581514 MYO15BQ96JP2 1530 aa31.33■■■□□ 2.61
SCN4A-202ENST00000581514 UNC13AQ9UPW8 1703 aa31.32■■■□□ 2.61
SCN4A-202ENST00000581514 PABPN1Q86U42 306 aaKnown RBP eCLIP31.32■■■□□ 2.6
SCN4A-202ENST00000581514 BICRAQ9NZM4 1560 aa31.09■■■□□ 2.57
SCN4A-202ENST00000581514 ZCCHC6Q5VYS8 1495 aaKnown RBP30.99■■■□□ 2.55
SCN4A-202ENST00000581514 DCAF1Q9Y4B6 1507 aa30.9■■■□□ 2.54
SCN4A-202ENST00000581514 SHROOM4Q9ULL8 1493 aa30.66■■■□□ 2.5
SCN4A-202ENST00000581514 SCRIBQ14160 1630 aa30.61■■■□□ 2.49
SCN4A-202ENST00000581514 CC2D2AQ9P2K1 1620 aa30.41■■■□□ 2.46
SCN4A-202ENST00000581514 EIF4G1Q04637 1599 aaKnown RBP30.32■■■□□ 2.45
SCN4A-202ENST00000581514 CECR2Q9BXF3 1484 aa30.32■■■□□ 2.44
SCN4A-202ENST00000581514 NCAPD3P42695 1498 aa29.34■■■□□ 2.29
SCN4A-202ENST00000581514 ATAD2BQ9ULI0 1458 aa29.23■■■□□ 2.27
SCN4A-202ENST00000581514 SMARCA4P51532 1647 aa29.2■■■□□ 2.26
SCN4A-202ENST00000581514 SMARCA2P51531 1590 aa29.16■■■□□ 2.26
SCN4A-202ENST00000581514 HMGXB3Q12766 1538 aa29.12■■■□□ 2.25
SCN4A-202ENST00000581514 DNAJC5Q9H3Z4 198 aa29.09■■■□□ 2.25
SCN4A-202ENST00000581514 ERCC6Q03468 1493 aa29.06■■■□□ 2.24
SCN4A-202ENST00000581514 CUX2O14529 1486 aa29.04■■■□□ 2.24
SCN4A-202ENST00000581514 BAZ1AQ9NRL2 1556 aaPredicted RBP29.04■■■□□ 2.24
SCN4A-202ENST00000581514 BAZ1BQ9UIG0 1483 aaKnown RBP28.95■■■□□ 2.22
SCN4A-202ENST00000581514 PEG3Q9GZU2 1588 aa28.92■■■□□ 2.22
SCN4A-202ENST00000581514 NESP48681 1621 aa28.9■■■□□ 2.22
SCN4A-202ENST00000581514 MROH2BQ7Z745 1585 aa28.82■■■□□ 2.2
SCN4A-202ENST00000581514 LAMC3Q9Y6N6 1575 aa28.7■■■□□ 2.18
SCN4A-202ENST00000581514 THOC2Q8NI27 1593 aaKnown RBP28.63■■■□□ 2.17
SCN4A-202ENST00000581514 KIF21AQ7Z4S6 1674 aa28.54■■■□□ 2.16
SCN4A-202ENST00000581514 PDS5BQ9NTI5 1447 aa28.52■■■□□ 2.16
SCN4A-202ENST00000581514 WIZO95785 1651 aa28.48■■■□□ 2.15
SCN4A-202ENST00000581514 CADPSQ9ULU8 1353 aa28.43■■■□□ 2.14
SCN4A-202ENST00000581514 MRC2Q9UBG0 1479 aa28.28■■■□□ 2.12
SCN4A-202ENST00000581514 WDR62O43379 1518 aa28.22■■■□□ 2.11
SCN4A-202ENST00000581514 RSF1Q96T23 1441 aaPredicted RBP28.19■■■□□ 2.1
SCN4A-202ENST00000581514 CEP164Q9UPV0 1460 aa28.16■■■□□ 2.1
SCN4A-202ENST00000581514 FANCD2Q9BXW9 1451 aa28.12■■■□□ 2.09
SCN4A-202ENST00000581514 TOP2AP11388 1531 aaKnown RBP28.12■■■□□ 2.09
SCN4A-202ENST00000581514 CFTRP13569 1480 aa28.1■■■□□ 2.09
SCN4A-202ENST00000581514 URB2Q14146 1524 aaKnown RBP27.9■■■□□ 2.06
SCN4A-202ENST00000581514 PRDM2Q13029 1718 aa27.85■■■□□ 2.05
SCN4A-202ENST00000581514 CCDC88BA6NC98 1476 aa27.79■■■□□ 2.04
SCN4A-202ENST00000581514 TRIM41Q8WV44 630 aa27.78■■■□□ 2.04
SCN4A-202ENST00000581514 OSCARQ8IYS5 282 aa27.69■■■□□ 2.02
SCN4A-202ENST00000581514 IFT140Q96RY7 1462 aa27.6■■■□□ 2.01
SCN4A-202ENST00000581514 TOPBP1Q92547 1522 aa27.58■■■□□ 2.01
SCN4A-202ENST00000581514 ZNF608Q9ULD9 1512 aaPredicted RBP27.56■■■□□ 2
SCN4A-202ENST00000581514 ABCC8Q09428 1581 aa27.52■■■□□ 2
SCN4A-202ENST00000581514 DNMBPQ6XZF7 1577 aa27.48■■□□□ 1.99
SCN4A-202ENST00000581514 EIF4G3O43432 1585 aaKnown RBP27.41■■□□□ 1.98
SCN4A-202ENST00000581514 RIMBP3CA6NJZ7 1639 aa27.36■■□□□ 1.97
SCN4A-202ENST00000581514 RIMBP3BA6NNM3 1639 aa27.36■■□□□ 1.97
SCN4A-202ENST00000581514 RIMBP3Q9UFD9 1639 aa27.36■■□□□ 1.97
SCN4A-202ENST00000581514 TARBP1Q13395 1621 aaKnown RBP27.35■■□□□ 1.97
SCN4A-202ENST00000581514 AQRO60306 1485 aaKnown RBP eCLIP27.3■■□□□ 1.96
SCN4A-202ENST00000581514 POLA1P09884 1462 aaPredicted RBP27.3■■□□□ 1.96
SCN4A-202ENST00000581514 ARHGEF11O15085 1522 aa27.26■■□□□ 1.95
SCN4A-202ENST00000581514 CHD1O14646 1710 aa27.24■■□□□ 1.95
SCN4A-202ENST00000581514 RAD54L2Q9Y4B4 1467 aa27.19■■□□□ 1.94
SCN4A-202ENST00000581514 SOGA1O94964 1423 aa27.16■■□□□ 1.94
SCN4A-202ENST00000581514 FGD5Q6ZNL6 1462 aa27.12■■□□□ 1.93
SCN4A-202ENST00000581514 TDRD9Q8NDG6 1382 aaKnown RBP27.11■■□□□ 1.93
SCN4A-202ENST00000581514 FBLN2P98095 1184 aa27.11■■□□□ 1.93
SCN4A-202ENST00000581514 CUX1P39880 1505 aa27.09■■□□□ 1.93
SCN4A-202ENST00000581514 WDR97A6NE52 1622 aa27.07■■□□□ 1.92
SCN4A-202ENST00000581514 CYB5RLQ6IPT4 315 aa27.05■■□□□ 1.92
SCN4A-202ENST00000581514 SNAPC4Q5SXM2 1469 aa27.02■■□□□ 1.92
SCN4A-202ENST00000581514 ARAP1Q96P48 1450 aa27■■□□□ 1.91
SCN4A-202ENST00000581514 MAGI1Q96QZ7 1491 aaPredicted RBP26.95■■□□□ 1.91
SCN4A-202ENST00000581514 GRIN2BQ13224 1484 aa26.94■■□□□ 1.9
SCN4A-202ENST00000581514 CLASP1Q7Z460 1538 aa26.91■■□□□ 1.9
SCN4A-202ENST00000581514 CHMP7Q8WUX9 453 aaPredicted RBP26.91■■□□□ 1.9
SCN4A-202ENST00000581514 SYNJ1O43426 1573 aa26.88■■□□□ 1.89
SCN4A-202ENST00000581514 SUPT5HO00267 1087 aaKnown RBP26.88■■□□□ 1.89
SCN4A-202ENST00000581514 SYNJ2O15056 1496 aa26.86■■□□□ 1.89
SCN4A-202ENST00000581514 PBRM1Q86U86 1689 aa26.85■■□□□ 1.89
SCN4A-202ENST00000581514 GAPVD1Q14C86 1478 aa26.84■■□□□ 1.89
SCN4A-202ENST00000581514 ABCA10Q8WWZ4 1543 aa26.8■■□□□ 1.88
SCN4A-202ENST00000581514 ABCA5Q8WWZ7 1642 aa26.78■■□□□ 1.88
SCN4A-202ENST00000581514 TRHP20396 242 aaPredicted RBP26.77■■□□□ 1.88
SCN4A-202ENST00000581514 WRNQ14191 1432 aaPredicted RBP eCLIP26.68■■□□□ 1.86
SCN4A-202ENST00000581514 BIVM-ERCC5R4GMW8 1640 aa26.65■■□□□ 1.86
SCN4A-202ENST00000581514 TOP2BQ02880 1626 aa26.64■■□□□ 1.85
SCN4A-202ENST00000581514 GRIN2AQ12879 1464 aa26.6■■□□□ 1.85
SCN4A-202ENST00000581514 ADAMTS12P58397 1594 aa26.58■■□□□ 1.85
SCN4A-202ENST00000581514 CEP170Q5SW79 1584 aa26.51■■□□□ 1.83
SCN4A-202ENST00000581514 NUP160Q12769 1436 aa26.51■■□□□ 1.83
SCN4A-202ENST00000581514 FHAD1B1AJZ9 1412 aa26.49■■□□□ 1.83
SCN4A-202ENST00000581514 ERCC6L2Q5T890 1561 aa26.49■■□□□ 1.83
SCN4A-202ENST00000581514 ERICH3Q5RHP9 1530 aa26.47■■□□□ 1.83
SCN4A-202ENST00000581514 SHROOM2Q13796 1616 aa26.41■■□□□ 1.82
SCN4A-202ENST00000581514 PRG4Q92954 1404 aaPredicted RBP26.25■■□□□ 1.79
SCN4A-202ENST00000581514 JPH4Q96JJ6 628 aa26.23■■□□□ 1.79
SCN4A-202ENST00000581514 RUSC2Q8N2Y8 1516 aa26.21■■□□□ 1.79
SCN4A-202ENST00000581514 IGF1RP08069 1367 aa26.1■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms