RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 NISCHQ9Y2I1 1504 aa49.32■■■■■ 5.49
SS18-218ENST00000581021 CCDC180Q9P1Z9 1646 aa43.84■■■■■ 4.61
SS18-218ENST00000581021 ABCC9O60706 1549 aa43.04■■■■■ 4.48
SS18-218ENST00000581021 RB1CC1Q8TDY2 1594 aa41.28■■■■■ 4.2
SS18-218ENST00000581021 NACADO15069 1562 aa41.22■■■■■ 4.19
SS18-218ENST00000581021 DCAF8L2P0C7V8 631 aa41.12■■■■■ 4.17
SS18-218ENST00000581021 ZCCHC6Q5VYS8 1495 aaKnown RBP41.1■■■■■ 4.17
SS18-218ENST00000581021 MYO15BQ96JP2 1530 aa40.95■■■■■ 4.15
SS18-218ENST00000581021 DCAF1Q9Y4B6 1507 aa40.77■■■■■ 4.12
SS18-218ENST00000581021 UNC13AQ9UPW8 1703 aa40.43■■■■■ 4.06
SS18-218ENST00000581021 PABPN1Q86U42 306 aaKnown RBP eCLIP40.2■■■■■ 4.03
SS18-218ENST00000581021 BICRAQ9NZM4 1560 aa40.18■■■■■ 4.02
SS18-218ENST00000581021 SCRIBQ14160 1630 aa40.06■■■■■ 4
SS18-218ENST00000581021 DNAJC5BQ9UF47 199 aa39.65■■■■□ 3.94
SS18-218ENST00000581021 SHROOM4Q9ULL8 1493 aa39.6■■■■□ 3.93
SS18-218ENST00000581021 EIF4G1Q04637 1599 aaKnown RBP39.06■■■■□ 3.84
SS18-218ENST00000581021 CC2D2AQ9P2K1 1620 aa38.92■■■■□ 3.82
SS18-218ENST00000581021 CECR2Q9BXF3 1484 aa38.65■■■■□ 3.78
SS18-218ENST00000581021 SMARCA4P51532 1647 aa38.3■■■■□ 3.72
SS18-218ENST00000581021 BAZ1AQ9NRL2 1556 aaPredicted RBP38.19■■■■□ 3.7
SS18-218ENST00000581021 ATAD2BQ9ULI0 1458 aa38.11■■■■□ 3.69
SS18-218ENST00000581021 NCAPD3P42695 1498 aa38.07■■■■□ 3.68
SS18-218ENST00000581021 MROH2BQ7Z745 1585 aa38.06■■■■□ 3.68
SS18-218ENST00000581021 SMARCA2P51531 1590 aa37.99■■■■□ 3.67
SS18-218ENST00000581021 PEG3Q9GZU2 1588 aa37.92■■■■□ 3.66
SS18-218ENST00000581021 HMGXB3Q12766 1538 aa37.88■■■■□ 3.65
SS18-218ENST00000581021 BAZ1BQ9UIG0 1483 aaKnown RBP37.75■■■■□ 3.63
SS18-218ENST00000581021 WIZO95785 1651 aa37.63■■■■□ 3.61
SS18-218ENST00000581021 RSF1Q96T23 1441 aaPredicted RBP37.57■■■■□ 3.6
SS18-218ENST00000581021 NESP48681 1621 aa37.27■■■■□ 3.56
SS18-218ENST00000581021 TOP2AP11388 1531 aaKnown RBP37.2■■■■□ 3.55
SS18-218ENST00000581021 LAMC3Q9Y6N6 1575 aa37.04■■■■□ 3.52
SS18-218ENST00000581021 ERCC6Q03468 1493 aa37.01■■■■□ 3.52
SS18-218ENST00000581021 CADPSQ9ULU8 1353 aa36.94■■■■□ 3.5
SS18-218ENST00000581021 KIF21AQ7Z4S6 1674 aa36.78■■■■□ 3.48
SS18-218ENST00000581021 CCDC88BA6NC98 1476 aa36.77■■■■□ 3.48
SS18-218ENST00000581021 PDS5BQ9NTI5 1447 aa36.76■■■■□ 3.48
SS18-218ENST00000581021 CFTRP13569 1480 aa36.74■■■■□ 3.47
SS18-218ENST00000581021 THOC2Q8NI27 1593 aaKnown RBP36.7■■■■□ 3.47
SS18-218ENST00000581021 CUX2O14529 1486 aa36.67■■■■□ 3.46
SS18-218ENST00000581021 FANCD2Q9BXW9 1451 aa36.55■■■■□ 3.44
SS18-218ENST00000581021 SUPT5HO00267 1087 aaKnown RBP36.48■■■■□ 3.43
SS18-218ENST00000581021 CEP164Q9UPV0 1460 aa36.48■■■■□ 3.43
SS18-218ENST00000581021 MRC2Q9UBG0 1479 aa36.46■■■■□ 3.43
SS18-218ENST00000581021 PRDM2Q13029 1718 aa36.4■■■■□ 3.42
SS18-218ENST00000581021 WDR62O43379 1518 aa36.38■■■■□ 3.41
SS18-218ENST00000581021 URB2Q14146 1524 aaKnown RBP36.24■■■■□ 3.39
SS18-218ENST00000581021 TOPBP1Q92547 1522 aa35.97■■■■□ 3.35
SS18-218ENST00000581021 DNMBPQ6XZF7 1577 aa35.89■■■■□ 3.34
SS18-218ENST00000581021 ABCC8Q09428 1581 aa35.83■■■■□ 3.33
SS18-218ENST00000581021 IFT140Q96RY7 1462 aa35.71■■■■□ 3.31
SS18-218ENST00000581021 CUX1P39880 1505 aa35.71■■■■□ 3.31
SS18-218ENST00000581021 POLA1P09884 1462 aaPredicted RBP35.67■■■■□ 3.3
SS18-218ENST00000581021 ZNF608Q9ULD9 1512 aaPredicted RBP35.66■■■■□ 3.3
SS18-218ENST00000581021 DNAJC5Q9H3Z4 198 aa35.65■■■■□ 3.3
SS18-218ENST00000581021 TARBP1Q13395 1621 aaKnown RBP35.61■■■■□ 3.29
SS18-218ENST00000581021 FGD5Q6ZNL6 1462 aa35.56■■■■□ 3.28
SS18-218ENST00000581021 RAD54L2Q9Y4B4 1467 aa35.54■■■■□ 3.28
SS18-218ENST00000581021 EIF4G3O43432 1585 aaKnown RBP35.48■■■■□ 3.27
SS18-218ENST00000581021 SOGA1O94964 1423 aa35.45■■■■□ 3.27
SS18-218ENST00000581021 AQRO60306 1485 aaKnown RBP eCLIP35.41■■■■□ 3.26
SS18-218ENST00000581021 SYNJ1O43426 1573 aa35.38■■■■□ 3.25
SS18-218ENST00000581021 WRNQ14191 1432 aaPredicted RBP eCLIP35.37■■■■□ 3.25
SS18-218ENST00000581021 TOP2BQ02880 1626 aa35.32■■■■□ 3.25
SS18-218ENST00000581021 BIVM-ERCC5R4GMW8 1640 aa35.32■■■■□ 3.25
SS18-218ENST00000581021 TDRD9Q8NDG6 1382 aaKnown RBP35.32■■■■□ 3.24
SS18-218ENST00000581021 WDR97A6NE52 1622 aa35.3■■■■□ 3.24
SS18-218ENST00000581021 ABCA10Q8WWZ4 1543 aa35.2■■■■□ 3.23
SS18-218ENST00000581021 ABCA5Q8WWZ7 1642 aa35.1■■■■□ 3.21
SS18-218ENST00000581021 SNAPC4Q5SXM2 1469 aa35.08■■■■□ 3.21
SS18-218ENST00000581021 OSCARQ8IYS5 282 aa35.07■■■■□ 3.2
SS18-218ENST00000581021 GRIN2BQ13224 1484 aa35.06■■■■□ 3.2
SS18-218ENST00000581021 GAPVD1Q14C86 1478 aa35.06■■■■□ 3.2
SS18-218ENST00000581021 CHD1O14646 1710 aa35.03■■■■□ 3.2
SS18-218ENST00000581021 PBRM1Q86U86 1689 aa35.01■■■■□ 3.19
SS18-218ENST00000581021 MAGI1Q96QZ7 1491 aaPredicted RBP34.97■■■■□ 3.19
SS18-218ENST00000581021 FBLN2P98095 1184 aa34.89■■■■□ 3.18
SS18-218ENST00000581021 SYNJ2O15056 1496 aa34.85■■■■□ 3.17
SS18-218ENST00000581021 ADAMTS12P58397 1594 aa34.77■■■■□ 3.16
SS18-218ENST00000581021 CHMP7Q8WUX9 453 aaPredicted RBP34.76■■■■□ 3.16
SS18-218ENST00000581021 ERICH3Q5RHP9 1530 aa34.75■■■■□ 3.15
SS18-218ENST00000581021 CLASP1Q7Z460 1538 aa34.69■■■■□ 3.14
SS18-218ENST00000581021 RIMBP3CA6NJZ7 1639 aa34.64■■■■□ 3.14
SS18-218ENST00000581021 RIMBP3BA6NNM3 1639 aa34.64■■■■□ 3.14
SS18-218ENST00000581021 RIMBP3Q9UFD9 1639 aa34.64■■■■□ 3.14
SS18-218ENST00000581021 GRIN2AQ12879 1464 aa34.64■■■■□ 3.14
SS18-218ENST00000581021 FHAD1B1AJZ9 1412 aa34.64■■■■□ 3.14
SS18-218ENST00000581021 ARHGEF11O15085 1522 aa34.63■■■■□ 3.13
SS18-218ENST00000581021 KIF27Q86VH2 1401 aa34.6■■■■□ 3.13
SS18-218ENST00000581021 IGF1RP08069 1367 aa34.53■■■■□ 3.12
SS18-218ENST00000581021 CEP170Q5SW79 1584 aa34.52■■■■□ 3.12
SS18-218ENST00000581021 NUP160Q12769 1436 aa34.51■■■■□ 3.12
SS18-218ENST00000581021 TRIM41Q8WV44 630 aa34.44■■■■□ 3.1
SS18-218ENST00000581021 RUSC2Q8N2Y8 1516 aa34.4■■■■□ 3.1
SS18-218ENST00000581021 CUL7Q14999 1698 aa34.4■■■■□ 3.1
SS18-218ENST00000581021 ARAP1Q96P48 1450 aa34.39■■■■□ 3.1
SS18-218ENST00000581021 CARMIL1Q5VZK9 1371 aa34.28■■■■□ 3.08
SS18-218ENST00000581021 SHROOM2Q13796 1616 aa34.26■■■■□ 3.08
SS18-218ENST00000581021 ERCC6L2Q5T890 1561 aa34.26■■■■□ 3.07
SS18-218ENST00000581021 CYB5RLQ6IPT4 315 aa34.24■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 209.9 ms