RNA–Protein interactions for RNA: ENST00000581003.5

CBX1-206, Transcript of chromobox 1, humanhuman

TSL 3

Gene CBX1, Length 812 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-206ENST00000581003 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
CBX1-206ENST00000581003 CCDC180Q9P1Z9 1646 aa27.67■■■□□ 2.02
CBX1-206ENST00000581003 ABCC9O60706 1549 aa27.4■■□□□ 1.98
CBX1-206ENST00000581003 RB1CC1Q8TDY2 1594 aa26.14■■□□□ 1.78
CBX1-206ENST00000581003 DCAF8L2P0C7V8 631 aa26.06■■□□□ 1.76
CBX1-206ENST00000581003 NACADO15069 1562 aa26.04■■□□□ 1.76
CBX1-206ENST00000581003 ZCCHC6Q5VYS8 1495 aaKnown RBP25.88■■□□□ 1.73
CBX1-206ENST00000581003 MYO15BQ96JP2 1530 aa25.77■■□□□ 1.72
CBX1-206ENST00000581003 UNC13AQ9UPW8 1703 aa25.66■■□□□ 1.7
CBX1-206ENST00000581003 DCAF1Q9Y4B6 1507 aa25.63■■□□□ 1.69
CBX1-206ENST00000581003 PABPN1Q86U42 306 aaKnown RBP eCLIP25.58■■□□□ 1.69
CBX1-206ENST00000581003 BICRAQ9NZM4 1560 aa25.48■■□□□ 1.67
CBX1-206ENST00000581003 SCRIBQ14160 1630 aa25.37■■□□□ 1.65
CBX1-206ENST00000581003 DNAJC5BQ9UF47 199 aa25.37■■□□□ 1.65
CBX1-206ENST00000581003 SHROOM4Q9ULL8 1493 aa24.99■■□□□ 1.59
CBX1-206ENST00000581003 EIF4G1Q04637 1599 aaKnown RBP24.78■■□□□ 1.56
CBX1-206ENST00000581003 CC2D2AQ9P2K1 1620 aa24.74■■□□□ 1.55
CBX1-206ENST00000581003 CECR2Q9BXF3 1484 aa24.58■■□□□ 1.53
CBX1-206ENST00000581003 SMARCA4P51532 1647 aa24.19■■□□□ 1.46
CBX1-206ENST00000581003 ATAD2BQ9ULI0 1458 aa24.09■■□□□ 1.45
CBX1-206ENST00000581003 BAZ1AQ9NRL2 1556 aaPredicted RBP24.07■■□□□ 1.44
CBX1-206ENST00000581003 NCAPD3P42695 1498 aa24.06■■□□□ 1.44
CBX1-206ENST00000581003 MROH2BQ7Z745 1585 aa24.03■■□□□ 1.44
CBX1-206ENST00000581003 SMARCA2P51531 1590 aa23.98■■□□□ 1.43
CBX1-206ENST00000581003 HMGXB3Q12766 1538 aa23.93■■□□□ 1.42
CBX1-206ENST00000581003 PEG3Q9GZU2 1588 aa23.9■■□□□ 1.42
CBX1-206ENST00000581003 BAZ1BQ9UIG0 1483 aaKnown RBP23.87■■□□□ 1.41
CBX1-206ENST00000581003 WIZO95785 1651 aa23.76■■□□□ 1.39
CBX1-206ENST00000581003 NESP48681 1621 aa23.7■■□□□ 1.38
CBX1-206ENST00000581003 RSF1Q96T23 1441 aaPredicted RBP23.64■■□□□ 1.37
CBX1-206ENST00000581003 ERCC6Q03468 1493 aa23.56■■□□□ 1.36
CBX1-206ENST00000581003 LAMC3Q9Y6N6 1575 aa23.44■■□□□ 1.34
CBX1-206ENST00000581003 TOP2AP11388 1531 aaKnown RBP23.43■■□□□ 1.34
CBX1-206ENST00000581003 KIF21AQ7Z4S6 1674 aa23.36■■□□□ 1.33
CBX1-206ENST00000581003 CADPSQ9ULU8 1353 aa23.34■■□□□ 1.33
CBX1-206ENST00000581003 THOC2Q8NI27 1593 aaKnown RBP23.33■■□□□ 1.33
CBX1-206ENST00000581003 CUX2O14529 1486 aa23.32■■□□□ 1.32
CBX1-206ENST00000581003 PDS5BQ9NTI5 1447 aa23.25■■□□□ 1.31
CBX1-206ENST00000581003 CCDC88BA6NC98 1476 aa23.18■■□□□ 1.3
CBX1-206ENST00000581003 CFTRP13569 1480 aa23.18■■□□□ 1.3
CBX1-206ENST00000581003 FANCD2Q9BXW9 1451 aa23.13■■□□□ 1.29
CBX1-206ENST00000581003 MRC2Q9UBG0 1479 aa23.11■■□□□ 1.29
CBX1-206ENST00000581003 CEP164Q9UPV0 1460 aa23.1■■□□□ 1.29
CBX1-206ENST00000581003 WDR62O43379 1518 aa23.06■■□□□ 1.28
CBX1-206ENST00000581003 PRDM2Q13029 1718 aa22.97■■□□□ 1.27
CBX1-206ENST00000581003 URB2Q14146 1524 aaKnown RBP22.97■■□□□ 1.27
CBX1-206ENST00000581003 SUPT5HO00267 1087 aaKnown RBP22.91■■□□□ 1.26
CBX1-206ENST00000581003 DNAJC5Q9H3Z4 198 aa22.85■■□□□ 1.25
CBX1-206ENST00000581003 TOPBP1Q92547 1522 aa22.75■■□□□ 1.23
CBX1-206ENST00000581003 DNMBPQ6XZF7 1577 aa22.68■■□□□ 1.22
CBX1-206ENST00000581003 ZNF608Q9ULD9 1512 aaPredicted RBP22.63■■□□□ 1.21
CBX1-206ENST00000581003 IFT140Q96RY7 1462 aa22.59■■□□□ 1.21
CBX1-206ENST00000581003 ABCC8Q09428 1581 aa22.58■■□□□ 1.2
CBX1-206ENST00000581003 POLA1P09884 1462 aaPredicted RBP22.55■■□□□ 1.2
CBX1-206ENST00000581003 CUX1P39880 1505 aa22.55■■□□□ 1.2
CBX1-206ENST00000581003 TARBP1Q13395 1621 aaKnown RBP22.53■■□□□ 1.2
CBX1-206ENST00000581003 EIF4G3O43432 1585 aaKnown RBP22.51■■□□□ 1.19
CBX1-206ENST00000581003 RAD54L2Q9Y4B4 1467 aa22.51■■□□□ 1.19
CBX1-206ENST00000581003 FGD5Q6ZNL6 1462 aa22.47■■□□□ 1.19
CBX1-206ENST00000581003 AQRO60306 1485 aaKnown RBP eCLIP22.44■■□□□ 1.184e-6■■■□□ 16.4
CBX1-206ENST00000581003 SOGA1O94964 1423 aa22.4■■□□□ 1.18
CBX1-206ENST00000581003 TDRD9Q8NDG6 1382 aaKnown RBP22.37■■□□□ 1.17
CBX1-206ENST00000581003 SYNJ1O43426 1573 aa22.32■■□□□ 1.16
CBX1-206ENST00000581003 WDR97A6NE52 1622 aa22.31■■□□□ 1.16
CBX1-206ENST00000581003 OSCARQ8IYS5 282 aa22.29■■□□□ 1.16
CBX1-206ENST00000581003 WRNQ14191 1432 aaPredicted RBP eCLIP22.26■■□□□ 1.15
CBX1-206ENST00000581003 CHD1O14646 1710 aa22.26■■□□□ 1.15
CBX1-206ENST00000581003 BIVM-ERCC5R4GMW8 1640 aa22.24■■□□□ 1.15
CBX1-206ENST00000581003 TOP2BQ02880 1626 aa22.24■■□□□ 1.15
CBX1-206ENST00000581003 SNAPC4Q5SXM2 1469 aa22.23■■□□□ 1.15
CBX1-206ENST00000581003 ABCA10Q8WWZ4 1543 aa22.19■■□□□ 1.14
CBX1-206ENST00000581003 ABCA5Q8WWZ7 1642 aa22.17■■□□□ 1.14
CBX1-206ENST00000581003 FBLN2P98095 1184 aa22.16■■□□□ 1.14
CBX1-206ENST00000581003 PBRM1Q86U86 1689 aa22.16■■□□□ 1.14
CBX1-206ENST00000581003 GRIN2BQ13224 1484 aa22.15■■□□□ 1.14
CBX1-206ENST00000581003 GAPVD1Q14C86 1478 aa22.15■■□□□ 1.14
CBX1-206ENST00000581003 TRIM41Q8WV44 630 aa22.11■■□□□ 1.13
CBX1-206ENST00000581003 MAGI1Q96QZ7 1491 aaPredicted RBP22.09■■□□□ 1.13
CBX1-206ENST00000581003 RIMBP3CA6NJZ7 1639 aa22.09■■□□□ 1.13
CBX1-206ENST00000581003 RIMBP3BA6NNM3 1639 aa22.09■■□□□ 1.13
CBX1-206ENST00000581003 RIMBP3Q9UFD9 1639 aa22.09■■□□□ 1.13
CBX1-206ENST00000581003 ARHGEF11O15085 1522 aa22.05■■□□□ 1.12
CBX1-206ENST00000581003 SYNJ2O15056 1496 aa22.04■■□□□ 1.12
CBX1-206ENST00000581003 CHMP7Q8WUX9 453 aaPredicted RBP22.01■■□□□ 1.11
CBX1-206ENST00000581003 CLASP1Q7Z460 1538 aa22■■□□□ 1.11
CBX1-206ENST00000581003 ADAMTS12P58397 1594 aa21.99■■□□□ 1.11
CBX1-206ENST00000581003 GRIN2AQ12879 1464 aa21.91■■□□□ 1.1
CBX1-206ENST00000581003 ERICH3Q5RHP9 1530 aa21.9■■□□□ 1.1
CBX1-206ENST00000581003 ARAP1Q96P48 1450 aa21.89■■□□□ 1.09
CBX1-206ENST00000581003 CEP170Q5SW79 1584 aa21.87■■□□□ 1.09
CBX1-206ENST00000581003 FHAD1B1AJZ9 1412 aa21.86■■□□□ 1.09
CBX1-206ENST00000581003 CYB5RLQ6IPT4 315 aa21.82■■□□□ 1.08
CBX1-206ENST00000581003 NUP160Q12769 1436 aa21.8■■□□□ 1.08
CBX1-206ENST00000581003 ERCC6L2Q5T890 1561 aa21.78■■□□□ 1.08
CBX1-206ENST00000581003 KIF27Q86VH2 1401 aa21.76■■□□□ 1.07
CBX1-206ENST00000581003 IGF1RP08069 1367 aa21.74■■□□□ 1.07
CBX1-206ENST00000581003 RUSC2Q8N2Y8 1516 aa21.68■■□□□ 1.06
CBX1-206ENST00000581003 SHROOM2Q13796 1616 aa21.68■■□□□ 1.06
CBX1-206ENST00000581003 CUL7Q14999 1698 aa21.66■■□□□ 1.06
CBX1-206ENST00000581003 CARMIL1Q5VZK9 1371 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms