RNA–Protein interactions for RNA: ENST00000580980.1

PSMD3-205, Transcript of proteasome 26S subunit, non-ATPase 3, humanhuman

TSL 2

Gene PSMD3, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMD3-205ENST00000580980 NISCHQ9Y2I1 1504 aa29.96■■■□□ 2.39
PSMD3-205ENST00000580980 CCDC180Q9P1Z9 1646 aa26.72■■□□□ 1.87
PSMD3-205ENST00000580980 ABCC9O60706 1549 aa26.36■■□□□ 1.81
PSMD3-205ENST00000580980 RB1CC1Q8TDY2 1594 aa25.29■■□□□ 1.64
PSMD3-205ENST00000580980 NACADO15069 1562 aa25.22■■□□□ 1.63
PSMD3-205ENST00000580980 DCAF8L2P0C7V8 631 aa25.11■■□□□ 1.61
PSMD3-205ENST00000580980 MYO15BQ96JP2 1530 aa25.02■■□□□ 1.6
PSMD3-205ENST00000580980 ZCCHC6Q5VYS8 1495 aaKnown RBP24.89■■□□□ 1.58
PSMD3-205ENST00000580980 DCAF1Q9Y4B6 1507 aa24.81■■□□□ 1.56
PSMD3-205ENST00000580980 UNC13AQ9UPW8 1703 aa24.61■■□□□ 1.53
PSMD3-205ENST00000580980 PABPN1Q86U42 306 aaKnown RBP eCLIP24.6■■□□□ 1.53
PSMD3-205ENST00000580980 BICRAQ9NZM4 1560 aa24.5■■□□□ 1.51
PSMD3-205ENST00000580980 DNAJC5BQ9UF47 199 aa24.43■■□□□ 1.5
PSMD3-205ENST00000580980 SHROOM4Q9ULL8 1493 aa24.32■■□□□ 1.48
PSMD3-205ENST00000580980 SCRIBQ14160 1630 aa24.31■■□□□ 1.48
PSMD3-205ENST00000580980 EIF4G1Q04637 1599 aaKnown RBP23.88■■□□□ 1.41
PSMD3-205ENST00000580980 CC2D2AQ9P2K1 1620 aa23.84■■□□□ 1.41
PSMD3-205ENST00000580980 CECR2Q9BXF3 1484 aa23.75■■□□□ 1.39
PSMD3-205ENST00000580980 NCAPD3P42695 1498 aa23.29■■□□□ 1.32
PSMD3-205ENST00000580980 SMARCA4P51532 1647 aa23.26■■□□□ 1.31
PSMD3-205ENST00000580980 BAZ1AQ9NRL2 1556 aaPredicted RBP23.24■■□□□ 1.31
PSMD3-205ENST00000580980 ATAD2BQ9ULI0 1458 aa23.24■■□□□ 1.31
PSMD3-205ENST00000580980 SMARCA2P51531 1590 aa23.2■■□□□ 1.3
PSMD3-205ENST00000580980 HMGXB3Q12766 1538 aa23.13■■□□□ 1.29
PSMD3-205ENST00000580980 PEG3Q9GZU2 1588 aa23.08■■□□□ 1.29
PSMD3-205ENST00000580980 MROH2BQ7Z745 1585 aa23.05■■□□□ 1.28
PSMD3-205ENST00000580980 BAZ1BQ9UIG0 1483 aaKnown RBP23.02■■□□□ 1.28
PSMD3-205ENST00000580980 ERCC6Q03468 1493 aa22.76■■□□□ 1.23
PSMD3-205ENST00000580980 WIZO95785 1651 aa22.76■■□□□ 1.23
PSMD3-205ENST00000580980 RSF1Q96T23 1441 aaPredicted RBP22.73■■□□□ 1.23
PSMD3-205ENST00000580980 NESP48681 1621 aa22.72■■□□□ 1.23
PSMD3-205ENST00000580980 LAMC3Q9Y6N6 1575 aa22.68■■□□□ 1.22
PSMD3-205ENST00000580980 CUX2O14529 1486 aa22.65■■□□□ 1.22
PSMD3-205ENST00000580980 CADPSQ9ULU8 1353 aa22.6■■□□□ 1.21
PSMD3-205ENST00000580980 PDS5BQ9NTI5 1447 aa22.57■■□□□ 1.2
PSMD3-205ENST00000580980 TOP2AP11388 1531 aaKnown RBP22.55■■□□□ 1.2
PSMD3-205ENST00000580980 THOC2Q8NI27 1593 aaKnown RBP22.44■■□□□ 1.18
PSMD3-205ENST00000580980 KIF21AQ7Z4S6 1674 aa22.42■■□□□ 1.18
PSMD3-205ENST00000580980 CFTRP13569 1480 aa22.4■■□□□ 1.18
PSMD3-205ENST00000580980 MRC2Q9UBG0 1479 aa22.32■■□□□ 1.16
PSMD3-205ENST00000580980 FANCD2Q9BXW9 1451 aa22.3■■□□□ 1.16
PSMD3-205ENST00000580980 CEP164Q9UPV0 1460 aa22.3■■□□□ 1.16
PSMD3-205ENST00000580980 CCDC88BA6NC98 1476 aa22.29■■□□□ 1.16
PSMD3-205ENST00000580980 DNAJC5Q9H3Z4 198 aa22.25■■□□□ 1.15
PSMD3-205ENST00000580980 WDR62O43379 1518 aa22.25■■□□□ 1.15
PSMD3-205ENST00000580980 PRDM2Q13029 1718 aa22.12■■□□□ 1.13
PSMD3-205ENST00000580980 URB2Q14146 1524 aaKnown RBP22.07■■□□□ 1.12
PSMD3-205ENST00000580980 ABCC8Q09428 1581 aa21.95■■□□□ 1.11
PSMD3-205ENST00000580980 SUPT5HO00267 1087 aaKnown RBP21.94■■□□□ 1.1
PSMD3-205ENST00000580980 TOPBP1Q92547 1522 aa21.91■■□□□ 1.1
PSMD3-205ENST00000580980 DNMBPQ6XZF7 1577 aa21.87■■□□□ 1.09
PSMD3-205ENST00000580980 IFT140Q96RY7 1462 aa21.86■■□□□ 1.09
PSMD3-205ENST00000580980 ZNF608Q9ULD9 1512 aaPredicted RBP21.74■■□□□ 1.07
PSMD3-205ENST00000580980 POLA1P09884 1462 aaPredicted RBP21.71■■□□□ 1.07
PSMD3-205ENST00000580980 OSCARQ8IYS5 282 aa21.68■■□□□ 1.06
PSMD3-205ENST00000580980 TARBP1Q13395 1621 aaKnown RBP21.67■■□□□ 1.06
PSMD3-205ENST00000580980 CUX1P39880 1505 aa21.64■■□□□ 1.05
PSMD3-205ENST00000580980 SOGA1O94964 1423 aa21.63■■□□□ 1.05
PSMD3-205ENST00000580980 EIF4G3O43432 1585 aaKnown RBP21.62■■□□□ 1.05
PSMD3-205ENST00000580980 FGD5Q6ZNL6 1462 aa21.61■■□□□ 1.05
PSMD3-205ENST00000580980 AQRO60306 1485 aaKnown RBP eCLIP21.6■■□□□ 1.053e-6■■■■■ 32.5
PSMD3-205ENST00000580980 RAD54L2Q9Y4B4 1467 aa21.6■■□□□ 1.05
PSMD3-205ENST00000580980 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
PSMD3-205ENST00000580980 TDRD9Q8NDG6 1382 aaKnown RBP21.52■■□□□ 1.04
PSMD3-205ENST00000580980 WRNQ14191 1432 aaPredicted RBP eCLIP21.44■■□□□ 1.02
PSMD3-205ENST00000580980 GRIN2BQ13224 1484 aa21.42■■□□□ 1.02
PSMD3-205ENST00000580980 ABCA10Q8WWZ4 1543 aa21.42■■□□□ 1.02
PSMD3-205ENST00000580980 TOP2BQ02880 1626 aa21.4■■□□□ 1.02
PSMD3-205ENST00000580980 FBLN2P98095 1184 aa21.4■■□□□ 1.02
PSMD3-205ENST00000580980 BIVM-ERCC5R4GMW8 1640 aa21.39■■□□□ 1.01
PSMD3-205ENST00000580980 SNAPC4Q5SXM2 1469 aa21.39■■□□□ 1.01
PSMD3-205ENST00000580980 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.01
PSMD3-205ENST00000580980 GAPVD1Q14C86 1478 aa21.38■■□□□ 1.01
PSMD3-205ENST00000580980 CHD1O14646 1710 aa21.37■■□□□ 1.01
PSMD3-205ENST00000580980 TRIM41Q8WV44 630 aa21.35■■□□□ 1.01
PSMD3-205ENST00000580980 SYNJ1O43426 1573 aa21.35■■□□□ 1.01
PSMD3-205ENST00000580980 CHMP7Q8WUX9 453 aaPredicted RBP21.33■■□□□ 1.01
PSMD3-205ENST00000580980 ABCA5Q8WWZ7 1642 aa21.32■■□□□ 1
PSMD3-205ENST00000580980 SYNJ2O15056 1496 aa21.31■■□□□ 1
PSMD3-205ENST00000580980 RIMBP3CA6NJZ7 1639 aa21.28■■□□□ 1
PSMD3-205ENST00000580980 RIMBP3BA6NNM3 1639 aa21.28■■□□□ 1
PSMD3-205ENST00000580980 RIMBP3Q9UFD9 1639 aa21.28■■□□□ 1
PSMD3-205ENST00000580980 ARHGEF11O15085 1522 aa21.28■■□□□ 1
PSMD3-205ENST00000580980 PBRM1Q86U86 1689 aa21.28■■□□□ 1
PSMD3-205ENST00000580980 CLASP1Q7Z460 1538 aa21.19■□□□□ 0.98
PSMD3-205ENST00000580980 ERICH3Q5RHP9 1530 aa21.16■□□□□ 0.98
PSMD3-205ENST00000580980 ADAMTS12P58397 1594 aa21.14■□□□□ 0.97
PSMD3-205ENST00000580980 FHAD1B1AJZ9 1412 aa21.13■□□□□ 0.97
PSMD3-205ENST00000580980 GRIN2AQ12879 1464 aa21.12■□□□□ 0.97
PSMD3-205ENST00000580980 CYB5RLQ6IPT4 315 aa21.11■□□□□ 0.97
PSMD3-205ENST00000580980 ARAP1Q96P48 1450 aa21.08■□□□□ 0.97
PSMD3-205ENST00000580980 NUP160Q12769 1436 aa21.05■□□□□ 0.96
PSMD3-205ENST00000580980 KIF27Q86VH2 1401 aa21.03■□□□□ 0.96
PSMD3-205ENST00000580980 CEP170Q5SW79 1584 aa21■□□□□ 0.95
PSMD3-205ENST00000580980 IGF1RP08069 1367 aa20.97■□□□□ 0.95
PSMD3-205ENST00000580980 CUL7Q14999 1698 aa20.89■□□□□ 0.94
PSMD3-205ENST00000580980 SHROOM2Q13796 1616 aa20.89■□□□□ 0.94
PSMD3-205ENST00000580980 JPH4Q96JJ6 628 aa20.86■□□□□ 0.93
PSMD3-205ENST00000580980 ERCC6L2Q5T890 1561 aa20.84■□□□□ 0.93
PSMD3-205ENST00000580980 CARMIL1Q5VZK9 1371 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 323.1 ms