RNA–Protein interactions for RNA: ENST00000580875.1

SNX11-207, Transcript of sorting nexin 11, humanhuman

TSL 2

Gene SNX11, Length 704 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX11-207ENST00000580875 NISCHQ9Y2I1 1504 aa52.2■■■■■ 5.95
SNX11-207ENST00000580875 ABCC9O60706 1549 aa46.85■■■■■ 5.09
SNX11-207ENST00000580875 CCDC180Q9P1Z9 1646 aa46.83■■■■■ 5.09
SNX11-207ENST00000580875 RB1CC1Q8TDY2 1594 aa44.6■■■■■ 4.73
SNX11-207ENST00000580875 NACADO15069 1562 aa44.31■■■■■ 4.68
SNX11-207ENST00000580875 DCAF8L2P0C7V8 631 aa44.06■■■■■ 4.64
SNX11-207ENST00000580875 DNAJC5BQ9UF47 199 aa43.95■■■■■ 4.63
SNX11-207ENST00000580875 MYO15BQ96JP2 1530 aa43.7■■■■■ 4.59
SNX11-207ENST00000580875 PABPN1Q86U42 306 aaKnown RBP eCLIP43.62■■■■■ 4.57
SNX11-207ENST00000580875 UNC13AQ9UPW8 1703 aa43.51■■■■■ 4.56
SNX11-207ENST00000580875 BICRAQ9NZM4 1560 aa43.27■■■■■ 4.52
SNX11-207ENST00000580875 ZCCHC6Q5VYS8 1495 aaKnown RBP43.25■■■■■ 4.51
SNX11-207ENST00000580875 DCAF1Q9Y4B6 1507 aa43.13■■■■■ 4.5
SNX11-207ENST00000580875 SHROOM4Q9ULL8 1493 aa42.75■■■■■ 4.43
SNX11-207ENST00000580875 SCRIBQ14160 1630 aa42.66■■■■■ 4.42
SNX11-207ENST00000580875 CC2D2AQ9P2K1 1620 aa42.31■■■■■ 4.36
SNX11-207ENST00000580875 EIF4G1Q04637 1599 aaKnown RBP42.23■■■■■ 4.35
SNX11-207ENST00000580875 CECR2Q9BXF3 1484 aa42.23■■■■■ 4.35
SNX11-207ENST00000580875 NCAPD3P42695 1498 aa40.9■■■■■ 4.14
SNX11-207ENST00000580875 ATAD2BQ9ULI0 1458 aa40.77■■■■■ 4.12
SNX11-207ENST00000580875 SMARCA4P51532 1647 aa40.7■■■■■ 4.11
SNX11-207ENST00000580875 SMARCA2P51531 1590 aa40.66■■■■■ 4.1
SNX11-207ENST00000580875 HMGXB3Q12766 1538 aa40.59■■■■■ 4.09
SNX11-207ENST00000580875 BAZ1AQ9NRL2 1556 aaPredicted RBP40.52■■■■■ 4.08
SNX11-207ENST00000580875 ERCC6Q03468 1493 aa40.48■■■■■ 4.07
SNX11-207ENST00000580875 CUX2O14529 1486 aa40.42■■■■■ 4.06
SNX11-207ENST00000580875 DNAJC5Q9H3Z4 198 aa40.41■■■■■ 4.06
SNX11-207ENST00000580875 BAZ1BQ9UIG0 1483 aaKnown RBP40.39■■■■■ 4.06
SNX11-207ENST00000580875 PEG3Q9GZU2 1588 aa40.33■■■■■ 4.05
SNX11-207ENST00000580875 NESP48681 1621 aa40.23■■■■■ 4.03
SNX11-207ENST00000580875 MROH2BQ7Z745 1585 aa40.2■■■■■ 4.03
SNX11-207ENST00000580875 LAMC3Q9Y6N6 1575 aa39.97■■■■□ 3.99
SNX11-207ENST00000580875 THOC2Q8NI27 1593 aaKnown RBP39.83■■■■□ 3.97
SNX11-207ENST00000580875 PDS5BQ9NTI5 1447 aa39.77■■■■□ 3.96
SNX11-207ENST00000580875 WIZO95785 1651 aa39.69■■■■□ 3.94
SNX11-207ENST00000580875 KIF21AQ7Z4S6 1674 aa39.68■■■■□ 3.94
SNX11-207ENST00000580875 CADPSQ9ULU8 1353 aa39.67■■■■□ 3.94
SNX11-207ENST00000580875 MRC2Q9UBG0 1479 aa39.41■■■■□ 3.9
SNX11-207ENST00000580875 RSF1Q96T23 1441 aaPredicted RBP39.38■■■■□ 3.89
SNX11-207ENST00000580875 WDR62O43379 1518 aa39.31■■■■□ 3.88
SNX11-207ENST00000580875 CEP164Q9UPV0 1460 aa39.25■■■■□ 3.87
SNX11-207ENST00000580875 TOP2AP11388 1531 aaKnown RBP39.23■■■■□ 3.87
SNX11-207ENST00000580875 CFTRP13569 1480 aa39.21■■■■□ 3.87
SNX11-207ENST00000580875 FANCD2Q9BXW9 1451 aa39.21■■■■□ 3.87
SNX11-207ENST00000580875 URB2Q14146 1524 aaKnown RBP38.86■■■■□ 3.81
SNX11-207ENST00000580875 CCDC88BA6NC98 1476 aa38.79■■■■□ 3.8
SNX11-207ENST00000580875 PRDM2Q13029 1718 aa38.75■■■■□ 3.79
SNX11-207ENST00000580875 TRIM41Q8WV44 630 aa38.62■■■■□ 3.77
SNX11-207ENST00000580875 OSCARQ8IYS5 282 aa38.57■■■■□ 3.76
SNX11-207ENST00000580875 IFT140Q96RY7 1462 aa38.47■■■■□ 3.75
SNX11-207ENST00000580875 TOPBP1Q92547 1522 aa38.46■■■■□ 3.75
SNX11-207ENST00000580875 ABCC8Q09428 1581 aa38.4■■■■□ 3.74
SNX11-207ENST00000580875 ZNF608Q9ULD9 1512 aaPredicted RBP38.39■■■■□ 3.74
SNX11-207ENST00000580875 DNMBPQ6XZF7 1577 aa38.31■■■■□ 3.72
SNX11-207ENST00000580875 EIF4G3O43432 1585 aaKnown RBP38.18■■■■□ 3.7
SNX11-207ENST00000580875 TARBP1Q13395 1621 aaKnown RBP38.09■■■■□ 3.69
SNX11-207ENST00000580875 POLA1P09884 1462 aaPredicted RBP38.06■■■■□ 3.68
SNX11-207ENST00000580875 AQRO60306 1485 aaKnown RBP eCLIP38.05■■■■□ 3.68
SNX11-207ENST00000580875 RIMBP3CA6NJZ7 1639 aa38.02■■■■□ 3.68
SNX11-207ENST00000580875 RIMBP3BA6NNM3 1639 aa38.02■■■■□ 3.68
SNX11-207ENST00000580875 RIMBP3Q9UFD9 1639 aa38.02■■■■□ 3.68
SNX11-207ENST00000580875 ARHGEF11O15085 1522 aa37.93■■■■□ 3.66
SNX11-207ENST00000580875 RAD54L2Q9Y4B4 1467 aa37.9■■■■□ 3.66
SNX11-207ENST00000580875 SOGA1O94964 1423 aa37.9■■■■□ 3.66
SNX11-207ENST00000580875 CHD1O14646 1710 aa37.86■■■■□ 3.65
SNX11-207ENST00000580875 FGD5Q6ZNL6 1462 aa37.82■■■■□ 3.64
SNX11-207ENST00000580875 TDRD9Q8NDG6 1382 aaKnown RBP37.81■■■■□ 3.64
SNX11-207ENST00000580875 FBLN2P98095 1184 aa37.81■■■■□ 3.64
SNX11-207ENST00000580875 CUX1P39880 1505 aa37.77■■■■□ 3.64
SNX11-207ENST00000580875 WDR97A6NE52 1622 aa37.74■■■■□ 3.63
SNX11-207ENST00000580875 SNAPC4Q5SXM2 1469 aa37.66■■■■□ 3.62
SNX11-207ENST00000580875 CYB5RLQ6IPT4 315 aa37.66■■■■□ 3.62
SNX11-207ENST00000580875 SUPT5HO00267 1087 aaKnown RBP37.61■■■■□ 3.61
SNX11-207ENST00000580875 MAGI1Q96QZ7 1491 aaPredicted RBP37.58■■■■□ 3.61
SNX11-207ENST00000580875 GRIN2BQ13224 1484 aa37.58■■■■□ 3.61
SNX11-207ENST00000580875 ARAP1Q96P48 1450 aa37.55■■■■□ 3.6
SNX11-207ENST00000580875 CHMP7Q8WUX9 453 aaPredicted RBP37.54■■■■□ 3.6
SNX11-207ENST00000580875 CLASP1Q7Z460 1538 aa37.47■■■■□ 3.59
SNX11-207ENST00000580875 SYNJ1O43426 1573 aa37.46■■■■□ 3.59
SNX11-207ENST00000580875 SYNJ2O15056 1496 aa37.45■■■■□ 3.59
SNX11-207ENST00000580875 GAPVD1Q14C86 1478 aa37.44■■■■□ 3.58
SNX11-207ENST00000580875 ABCA10Q8WWZ4 1543 aa37.41■■■■□ 3.58
SNX11-207ENST00000580875 PBRM1Q86U86 1689 aa37.37■■■■□ 3.57
SNX11-207ENST00000580875 ABCA5Q8WWZ7 1642 aa37.32■■■■□ 3.57
SNX11-207ENST00000580875 WRNQ14191 1432 aaPredicted RBP eCLIP37.27■■■■□ 3.56
SNX11-207ENST00000580875 TRHP20396 242 aaPredicted RBP37.25■■■■□ 3.55
SNX11-207ENST00000580875 TOP2BQ02880 1626 aa37.17■■■■□ 3.54
SNX11-207ENST00000580875 BIVM-ERCC5R4GMW8 1640 aa37.15■■■■□ 3.54
SNX11-207ENST00000580875 GRIN2AQ12879 1464 aa37.09■■■■□ 3.53
SNX11-207ENST00000580875 ADAMTS12P58397 1594 aa37.05■■■■□ 3.52
SNX11-207ENST00000580875 FHAD1B1AJZ9 1412 aa36.97■■■■□ 3.51
SNX11-207ENST00000580875 NUP160Q12769 1436 aa36.97■■■■□ 3.51
SNX11-207ENST00000580875 CEP170Q5SW79 1584 aa36.93■■■■□ 3.5
SNX11-207ENST00000580875 ERICH3Q5RHP9 1530 aa36.93■■■■□ 3.5
SNX11-207ENST00000580875 ERCC6L2Q5T890 1561 aa36.86■■■■□ 3.49
SNX11-207ENST00000580875 SHROOM2Q13796 1616 aa36.78■■■■□ 3.48
SNX11-207ENST00000580875 PRG4Q92954 1404 aaPredicted RBP36.61■■■■□ 3.45
SNX11-207ENST00000580875 JPH4Q96JJ6 628 aa36.59■■■■□ 3.45
SNX11-207ENST00000580875 RUSC2Q8N2Y8 1516 aa36.53■■■■□ 3.44
SNX11-207ENST00000580875 KIF27Q86VH2 1401 aa36.48■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms