RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 NISCHQ9Y2I1 1504 aa27.26■■□□□ 1.95
TOP3A-210ENST00000580713 AEBP2Q6ZN18 517 aaPredicted RBP26.53■■□□□ 1.84
TOP3A-210ENST00000580713 CHIC1Q5VXU3 224 aa25.35■■□□□ 1.65
TOP3A-210ENST00000580713 ABCC9O60706 1549 aa25.25■■□□□ 1.63
TOP3A-210ENST00000580713 CCDC180Q9P1Z9 1646 aa24.61■■□□□ 1.53
TOP3A-210ENST00000580713 DNAJC5BQ9UF47 199 aa24.14■■□□□ 1.45
TOP3A-210ENST00000580713 RB1CC1Q8TDY2 1594 aa23.74■■□□□ 1.39
TOP3A-210ENST00000580713 PABPN1Q86U42 306 aaKnown RBP eCLIP23.49■■□□□ 1.35
TOP3A-210ENST00000580713 DCAF8L2P0C7V8 631 aa23.45■■□□□ 1.34
TOP3A-210ENST00000580713 NACADO15069 1562 aa23.44■■□□□ 1.34
TOP3A-210ENST00000580713 UNC13AQ9UPW8 1703 aa23.12■■□□□ 1.29
TOP3A-210ENST00000580713 BICRAQ9NZM4 1560 aa23.02■■□□□ 1.28
TOP3A-210ENST00000580713 MYO15BQ96JP2 1530 aa22.9■■□□□ 1.26
TOP3A-210ENST00000580713 CECR2Q9BXF3 1484 aa22.78■■□□□ 1.24
TOP3A-210ENST00000580713 CC2D2AQ9P2K1 1620 aa22.71■■□□□ 1.23
TOP3A-210ENST00000580713 SHROOM4Q9ULL8 1493 aa22.65■■□□□ 1.22
TOP3A-210ENST00000580713 DNAJC5Q9H3Z4 198 aa22.54■■□□□ 1.2
TOP3A-210ENST00000580713 EIF4G1Q04637 1599 aaKnown RBP22.54■■□□□ 1.2
TOP3A-210ENST00000580713 SCRIBQ14160 1630 aa22.49■■□□□ 1.19
TOP3A-210ENST00000580713 ZCCHC6Q5VYS8 1495 aaKnown RBP22.46■■□□□ 1.19
TOP3A-210ENST00000580713 DCAF1Q9Y4B6 1507 aa22.42■■□□□ 1.18
TOP3A-210ENST00000580713 PHF23Q9BUL5 403 aaPredicted RBP22.38■■□□□ 1.17
TOP3A-210ENST00000580713 SENP3Q9H4L4 574 aaPredicted RBP22.35■■□□□ 1.17
TOP3A-210ENST00000580713 CUX2O14529 1486 aa21.92■■□□□ 1.1
TOP3A-210ENST00000580713 ERCC6Q03468 1493 aa21.86■■□□□ 1.09
TOP3A-210ENST00000580713 NCAPD3P42695 1498 aa21.66■■□□□ 1.06
TOP3A-210ENST00000580713 ATAD2BQ9ULI0 1458 aa21.53■■□□□ 1.04
TOP3A-210ENST00000580713 NESP48681 1621 aa21.52■■□□□ 1.04
TOP3A-210ENST00000580713 TRIM41Q8WV44 630 aa21.45■■□□□ 1.02
TOP3A-210ENST00000580713 SMARCA2P51531 1590 aa21.44■■□□□ 1.02
TOP3A-210ENST00000580713 HMGXB3Q12766 1538 aa21.42■■□□□ 1.02
TOP3A-210ENST00000580713 SMARCA4P51532 1647 aa21.36■■□□□ 1.01
TOP3A-210ENST00000580713 BAZ1BQ9UIG0 1483 aaKnown RBP21.32■■□□□ 1
TOP3A-210ENST00000580713 THOC2Q8NI27 1593 aaKnown RBP21.32■■□□□ 1
TOP3A-210ENST00000580713 LAMC3Q9Y6N6 1575 aa21.23■□□□□ 0.99
TOP3A-210ENST00000580713 PDS5BQ9NTI5 1447 aa21.21■□□□□ 0.99
TOP3A-210ENST00000580713 BAZ1AQ9NRL2 1556 aaPredicted RBP21.19■□□□□ 0.98
TOP3A-210ENST00000580713 KIF21AQ7Z4S6 1674 aa21.16■□□□□ 0.98
TOP3A-210ENST00000580713 PEG3Q9GZU2 1588 aa21.1■□□□□ 0.97
TOP3A-210ENST00000580713 MRC2Q9UBG0 1479 aa21.02■□□□□ 0.96
TOP3A-210ENST00000580713 CADPSQ9ULU8 1353 aa21.02■□□□□ 0.96
TOP3A-210ENST00000580713 MROH2BQ7Z745 1585 aa21.02■□□□□ 0.95
TOP3A-210ENST00000580713 FOXD1Q16676 465 aa20.95■□□□□ 0.94
TOP3A-210ENST00000580713 WDR62O43379 1518 aa20.94■□□□□ 0.94
TOP3A-210ENST00000580713 OSCARQ8IYS5 282 aa20.93■□□□□ 0.94
TOP3A-210ENST00000580713 CEP164Q9UPV0 1460 aa20.85■□□□□ 0.93
TOP3A-210ENST00000580713 FANCD2Q9BXW9 1451 aa20.78■□□□□ 0.92
TOP3A-210ENST00000580713 WIZO95785 1651 aa20.72■□□□□ 0.91
TOP3A-210ENST00000580713 CFTRP13569 1480 aa20.63■□□□□ 0.89
TOP3A-210ENST00000580713 URB2Q14146 1524 aaKnown RBP20.62■□□□□ 0.89
TOP3A-210ENST00000580713 RIMBP3CA6NJZ7 1639 aa20.61■□□□□ 0.89
TOP3A-210ENST00000580713 RIMBP3BA6NNM3 1639 aa20.61■□□□□ 0.89
TOP3A-210ENST00000580713 RIMBP3Q9UFD9 1639 aa20.61■□□□□ 0.89
TOP3A-210ENST00000580713 ARHGEF11O15085 1522 aa20.51■□□□□ 0.87
TOP3A-210ENST00000580713 CYB5RLQ6IPT4 315 aa20.5■□□□□ 0.87
TOP3A-210ENST00000580713 TRHP20396 242 aaPredicted RBP20.49■□□□□ 0.87
TOP3A-210ENST00000580713 ZNF608Q9ULD9 1512 aaPredicted RBP20.46■□□□□ 0.87
TOP3A-210ENST00000580713 IFT140Q96RY7 1462 aa20.44■□□□□ 0.86
TOP3A-210ENST00000580713 TOP2AP11388 1531 aaKnown RBP20.42■□□□□ 0.86
TOP3A-210ENST00000580713 RSF1Q96T23 1441 aaPredicted RBP20.41■□□□□ 0.86
TOP3A-210ENST00000580713 FBLN2P98095 1184 aa20.32■□□□□ 0.84
TOP3A-210ENST00000580713 PLPPR3Q6T4P5 718 aa20.31■□□□□ 0.84
TOP3A-210ENST00000580713 TOPBP1Q92547 1522 aa20.31■□□□□ 0.84
TOP3A-210ENST00000580713 PRDM2Q13029 1718 aa20.3■□□□□ 0.84
TOP3A-210ENST00000580713 ARAP1Q96P48 1450 aa20.28■□□□□ 0.84
TOP3A-210ENST00000580713 EIF4G3O43432 1585 aaKnown RBP20.28■□□□□ 0.84
TOP3A-210ENST00000580713 AQRO60306 1485 aaKnown RBP eCLIP20.24■□□□□ 0.834e-6■■□□□ 14.3
TOP3A-210ENST00000580713 ABCC8Q09428 1581 aa20.23■□□□□ 0.83
TOP3A-210ENST00000580713 CCDC88BA6NC98 1476 aa20.23■□□□□ 0.83
TOP3A-210ENST00000580713 CHD1O14646 1710 aa20.22■□□□□ 0.83
TOP3A-210ENST00000580713 DNMBPQ6XZF7 1577 aa20.17■□□□□ 0.82
TOP3A-210ENST00000580713 TARBP1Q13395 1621 aaKnown RBP20.12■□□□□ 0.81
TOP3A-210ENST00000580713 POLA1P09884 1462 aaPredicted RBP20.07■□□□□ 0.8
TOP3A-210ENST00000580713 TDRD9Q8NDG6 1382 aaKnown RBP20.07■□□□□ 0.8
TOP3A-210ENST00000580713 CHMP7Q8WUX9 453 aaPredicted RBP20.05■□□□□ 0.8
TOP3A-210ENST00000580713 RAD54L2Q9Y4B4 1467 aa20.04■□□□□ 0.8
TOP3A-210ENST00000580713 SOGA1O94964 1423 aa20.02■□□□□ 0.8
TOP3A-210ENST00000580713 SNAPC4Q5SXM2 1469 aa20.01■□□□□ 0.79
TOP3A-210ENST00000580713 CLASP1Q7Z460 1538 aa19.97■□□□□ 0.79
TOP3A-210ENST00000580713 SYNJ1O43426 1573 aa19.96■□□□□ 0.79
TOP3A-210ENST00000580713 PPP6R1Q9UPN7 881 aa19.92■□□□□ 0.78
TOP3A-210ENST00000580713 MAGI1Q96QZ7 1491 aaPredicted RBP19.9■□□□□ 0.78
TOP3A-210ENST00000580713 GRIN2BQ13224 1484 aa19.88■□□□□ 0.77
TOP3A-210ENST00000580713 FGD5Q6ZNL6 1462 aa19.88■□□□□ 0.77
TOP3A-210ENST00000580713 GAPVD1Q14C86 1478 aa19.86■□□□□ 0.77
TOP3A-210ENST00000580713 WDR97A6NE52 1622 aa19.86■□□□□ 0.77
TOP3A-210ENST00000580713 SYNJ2O15056 1496 aa19.86■□□□□ 0.77
TOP3A-210ENST00000580713 ADRA2BP18089 450 aa19.82■□□□□ 0.76
TOP3A-210ENST00000580713 CUX1P39880 1505 aa19.76■□□□□ 0.75
TOP3A-210ENST00000580713 PBRM1Q86U86 1689 aa19.69■□□□□ 0.74
TOP3A-210ENST00000580713 ERCC6L2Q5T890 1561 aa19.66■□□□□ 0.74
TOP3A-210ENST00000580713 ABCA10Q8WWZ4 1543 aa19.61■□□□□ 0.73
TOP3A-210ENST00000580713 GRIN2AQ12879 1464 aa19.6■□□□□ 0.73
TOP3A-210ENST00000580713 ABCA5Q8WWZ7 1642 aa19.58■□□□□ 0.73
TOP3A-210ENST00000580713 CEP170Q5SW79 1584 aa19.58■□□□□ 0.73
TOP3A-210ENST00000580713 PIAS4Q8N2W9 510 aaPredicted RBP19.55■□□□□ 0.72
TOP3A-210ENST00000580713 NUP160Q12769 1436 aa19.54■□□□□ 0.72
TOP3A-210ENST00000580713 FAM69CQ0P6D2 419 aa19.5■□□□□ 0.71
TOP3A-210ENST00000580713 ADAMTS12P58397 1594 aa19.49■□□□□ 0.71
TOP3A-210ENST00000580713 KIF13AQ9H1H9 1805 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 174.5 ms