RNA–Protein interactions for RNA: ENST00000580584.1

PMP22-208, Transcript of peripheral myelin protein 22, humanhuman

TSL 3

Gene PMP22, Length 428 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMP22-208ENST00000580584 NISCHQ9Y2I1 1504 aa38.27■■■■□ 3.72
PMP22-208ENST00000580584 CCDC180Q9P1Z9 1646 aa34.11■■■■□ 3.05
PMP22-208ENST00000580584 ABCC9O60706 1549 aa33.77■■■■□ 3
PMP22-208ENST00000580584 RB1CC1Q8TDY2 1594 aa32.28■■■□□ 2.76
PMP22-208ENST00000580584 NACADO15069 1562 aa32.15■■■□□ 2.74
PMP22-208ENST00000580584 DCAF8L2P0C7V8 631 aa32.13■■■□□ 2.73
PMP22-208ENST00000580584 MYO15BQ96JP2 1530 aa31.83■■■□□ 2.69
PMP22-208ENST00000580584 ZCCHC6Q5VYS8 1495 aaKnown RBP31.83■■■□□ 2.69
PMP22-208ENST00000580584 DCAF1Q9Y4B6 1507 aa31.59■■■□□ 2.65
PMP22-208ENST00000580584 UNC13AQ9UPW8 1703 aa31.52■■■□□ 2.64
PMP22-208ENST00000580584 PABPN1Q86U42 306 aaKnown RBP eCLIP31.51■■■□□ 2.63
PMP22-208ENST00000580584 BICRAQ9NZM4 1560 aa31.34■■■□□ 2.61
PMP22-208ENST00000580584 DNAJC5BQ9UF47 199 aa31.27■■■□□ 2.6
PMP22-208ENST00000580584 SCRIBQ14160 1630 aa31.2■■■□□ 2.58
PMP22-208ENST00000580584 SHROOM4Q9ULL8 1493 aa30.92■■■□□ 2.54
PMP22-208ENST00000580584 EIF4G1Q04637 1599 aaKnown RBP30.54■■■□□ 2.48
PMP22-208ENST00000580584 CC2D2AQ9P2K1 1620 aa30.49■■■□□ 2.47
PMP22-208ENST00000580584 CECR2Q9BXF3 1484 aa30.35■■■□□ 2.45
PMP22-208ENST00000580584 SMARCA4P51532 1647 aa29.76■■■□□ 2.35
PMP22-208ENST00000580584 NCAPD3P42695 1498 aa29.68■■■□□ 2.34
PMP22-208ENST00000580584 ATAD2BQ9ULI0 1458 aa29.68■■■□□ 2.34
PMP22-208ENST00000580584 BAZ1AQ9NRL2 1556 aaPredicted RBP29.67■■■□□ 2.34
PMP22-208ENST00000580584 SMARCA2P51531 1590 aa29.6■■■□□ 2.33
PMP22-208ENST00000580584 MROH2BQ7Z745 1585 aa29.52■■■□□ 2.32
PMP22-208ENST00000580584 HMGXB3Q12766 1538 aa29.51■■■□□ 2.32
PMP22-208ENST00000580584 PEG3Q9GZU2 1588 aa29.44■■■□□ 2.3
PMP22-208ENST00000580584 BAZ1BQ9UIG0 1483 aaKnown RBP29.42■■■□□ 2.3
PMP22-208ENST00000580584 WIZO95785 1651 aa29.17■■■□□ 2.26
PMP22-208ENST00000580584 NESP48681 1621 aa29.14■■■□□ 2.26
PMP22-208ENST00000580584 ERCC6Q03468 1493 aa29.11■■■□□ 2.25
PMP22-208ENST00000580584 RSF1Q96T23 1441 aaPredicted RBP29.06■■■□□ 2.24
PMP22-208ENST00000580584 LAMC3Q9Y6N6 1575 aa28.94■■■□□ 2.22
PMP22-208ENST00000580584 CUX2O14529 1486 aa28.87■■■□□ 2.21
PMP22-208ENST00000580584 TOP2AP11388 1531 aaKnown RBP28.84■■■□□ 2.21
PMP22-208ENST00000580584 CADPSQ9ULU8 1353 aa28.81■■■□□ 2.2
PMP22-208ENST00000580584 PDS5BQ9NTI5 1447 aa28.77■■■□□ 2.2
PMP22-208ENST00000580584 THOC2Q8NI27 1593 aaKnown RBP28.73■■■□□ 2.19
PMP22-208ENST00000580584 KIF21AQ7Z4S6 1674 aa28.73■■■□□ 2.19
PMP22-208ENST00000580584 CFTRP13569 1480 aa28.59■■■□□ 2.17
PMP22-208ENST00000580584 MRC2Q9UBG0 1479 aa28.53■■■□□ 2.16
PMP22-208ENST00000580584 CCDC88BA6NC98 1476 aa28.51■■■□□ 2.15
PMP22-208ENST00000580584 FANCD2Q9BXW9 1451 aa28.51■■■□□ 2.15
PMP22-208ENST00000580584 CEP164Q9UPV0 1460 aa28.5■■■□□ 2.15
PMP22-208ENST00000580584 WDR62O43379 1518 aa28.43■■■□□ 2.14
PMP22-208ENST00000580584 DNAJC5Q9H3Z4 198 aa28.33■■■□□ 2.13
PMP22-208ENST00000580584 PRDM2Q13029 1718 aa28.26■■■□□ 2.12
PMP22-208ENST00000580584 URB2Q14146 1524 aaKnown RBP28.26■■■□□ 2.11
PMP22-208ENST00000580584 SUPT5HO00267 1087 aaKnown RBP28.11■■■□□ 2.09
PMP22-208ENST00000580584 TOPBP1Q92547 1522 aa28.02■■■□□ 2.08
PMP22-208ENST00000580584 DNMBPQ6XZF7 1577 aa27.94■■■□□ 2.06
PMP22-208ENST00000580584 ABCC8Q09428 1581 aa27.92■■■□□ 2.06
PMP22-208ENST00000580584 IFT140Q96RY7 1462 aa27.89■■■□□ 2.06
PMP22-208ENST00000580584 ZNF608Q9ULD9 1512 aaPredicted RBP27.85■■■□□ 2.05
PMP22-208ENST00000580584 POLA1P09884 1462 aaPredicted RBP27.76■■■□□ 2.04
PMP22-208ENST00000580584 TARBP1Q13395 1621 aaKnown RBP27.72■■■□□ 2.03
PMP22-208ENST00000580584 CUX1P39880 1505 aa27.72■■■□□ 2.03
PMP22-208ENST00000580584 EIF4G3O43432 1585 aaKnown RBP27.71■■■□□ 2.03
PMP22-208ENST00000580584 RAD54L2Q9Y4B4 1467 aa27.67■■■□□ 2.02
PMP22-208ENST00000580584 FGD5Q6ZNL6 1462 aa27.66■■■□□ 2.02
PMP22-208ENST00000580584 AQRO60306 1485 aaKnown RBP eCLIP27.64■■■□□ 2.02
PMP22-208ENST00000580584 SOGA1O94964 1423 aa27.63■■■□□ 2.01
PMP22-208ENST00000580584 OSCARQ8IYS5 282 aa27.6■■■□□ 2.01
PMP22-208ENST00000580584 TDRD9Q8NDG6 1382 aaKnown RBP27.54■■■□□ 2
PMP22-208ENST00000580584 WDR97A6NE52 1622 aa27.43■■□□□ 1.98
PMP22-208ENST00000580584 WRNQ14191 1432 aaPredicted RBP eCLIP27.4■■□□□ 1.98
PMP22-208ENST00000580584 SNAPC4Q5SXM2 1469 aa27.39■■□□□ 1.98
PMP22-208ENST00000580584 CHD1O14646 1710 aa27.38■■□□□ 1.97
PMP22-208ENST00000580584 SYNJ1O43426 1573 aa27.38■■□□□ 1.97
PMP22-208ENST00000580584 FBLN2P98095 1184 aa27.37■■□□□ 1.97
PMP22-208ENST00000580584 TOP2BQ02880 1626 aa27.35■■□□□ 1.97
PMP22-208ENST00000580584 TRIM41Q8WV44 630 aa27.35■■□□□ 1.97
PMP22-208ENST00000580584 ABCA10Q8WWZ4 1543 aa27.35■■□□□ 1.97
PMP22-208ENST00000580584 BIVM-ERCC5R4GMW8 1640 aa27.34■■□□□ 1.97
PMP22-208ENST00000580584 GRIN2BQ13224 1484 aa27.34■■□□□ 1.97
PMP22-208ENST00000580584 GAPVD1Q14C86 1478 aa27.31■■□□□ 1.96
PMP22-208ENST00000580584 MAGI1Q96QZ7 1491 aaPredicted RBP27.29■■□□□ 1.96
PMP22-208ENST00000580584 ABCA5Q8WWZ7 1642 aa27.28■■□□□ 1.96
PMP22-208ENST00000580584 PBRM1Q86U86 1689 aa27.25■■□□□ 1.95
PMP22-208ENST00000580584 RIMBP3CA6NJZ7 1639 aa27.24■■□□□ 1.95
PMP22-208ENST00000580584 RIMBP3BA6NNM3 1639 aa27.24■■□□□ 1.95
PMP22-208ENST00000580584 RIMBP3Q9UFD9 1639 aa27.24■■□□□ 1.95
PMP22-208ENST00000580584 ARHGEF11O15085 1522 aa27.21■■□□□ 1.95
PMP22-208ENST00000580584 SYNJ2O15056 1496 aa27.2■■□□□ 1.95
PMP22-208ENST00000580584 CHMP7Q8WUX9 453 aaPredicted RBP27.2■■□□□ 1.94
PMP22-208ENST00000580584 CLASP1Q7Z460 1538 aa27.11■■□□□ 1.93
PMP22-208ENST00000580584 ADAMTS12P58397 1594 aa27.06■■□□□ 1.92
PMP22-208ENST00000580584 ERICH3Q5RHP9 1530 aa27■■□□□ 1.91
PMP22-208ENST00000580584 GRIN2AQ12879 1464 aa27■■□□□ 1.91
PMP22-208ENST00000580584 ARAP1Q96P48 1450 aa27■■□□□ 1.91
PMP22-208ENST00000580584 FHAD1B1AJZ9 1412 aa26.98■■□□□ 1.91
PMP22-208ENST00000580584 CYB5RLQ6IPT4 315 aa26.97■■□□□ 1.91
PMP22-208ENST00000580584 CEP170Q5SW79 1584 aa26.9■■□□□ 1.9
PMP22-208ENST00000580584 NUP160Q12769 1436 aa26.89■■□□□ 1.89
PMP22-208ENST00000580584 KIF27Q86VH2 1401 aa26.83■■□□□ 1.89
PMP22-208ENST00000580584 IGF1RP08069 1367 aa26.77■■□□□ 1.88
PMP22-208ENST00000580584 ERCC6L2Q5T890 1561 aa26.75■■□□□ 1.87
PMP22-208ENST00000580584 SHROOM2Q13796 1616 aa26.7■■□□□ 1.86
PMP22-208ENST00000580584 CUL7Q14999 1698 aa26.69■■□□□ 1.86
PMP22-208ENST00000580584 RUSC2Q8N2Y8 1516 aa26.67■■□□□ 1.86
PMP22-208ENST00000580584 PRG4Q92954 1404 aaPredicted RBP26.6■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms