RNA–Protein interactions for RNA: ENST00000580498.5

SMG8-204, Transcript of SMG8, nonsense mediated mRNA decay factor, humanhuman

TSL 5

Gene SMG8, Length 785 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG8-204ENST00000580498 NISCHQ9Y2I1 1504 aa49.21■■■■■ 5.47
SMG8-204ENST00000580498 CCDC180Q9P1Z9 1646 aa44.02■■■■■ 4.64
SMG8-204ENST00000580498 ABCC9O60706 1549 aa43.39■■■■■ 4.54
SMG8-204ENST00000580498 RB1CC1Q8TDY2 1594 aa41.67■■■■■ 4.26
SMG8-204ENST00000580498 NACADO15069 1562 aa41.5■■■■■ 4.23
SMG8-204ENST00000580498 DCAF8L2P0C7V8 631 aa41.43■■■■■ 4.22
SMG8-204ENST00000580498 MYO15BQ96JP2 1530 aa41.08■■■■■ 4.17
SMG8-204ENST00000580498 ZCCHC6Q5VYS8 1495 aaKnown RBP40.9■■■■■ 4.14
SMG8-204ENST00000580498 DCAF1Q9Y4B6 1507 aa40.73■■■■■ 4.11
SMG8-204ENST00000580498 UNC13AQ9UPW8 1703 aa40.56■■■■■ 4.08
SMG8-204ENST00000580498 PABPN1Q86U42 306 aaKnown RBP eCLIP40.45■■■■■ 4.07
SMG8-204ENST00000580498 BICRAQ9NZM4 1560 aa40.2■■■■■ 4.03
SMG8-204ENST00000580498 SCRIBQ14160 1630 aa40.07■■■■■ 4.01
SMG8-204ENST00000580498 DNAJC5BQ9UF47 199 aa40■■■■□ 3.99
SMG8-204ENST00000580498 SHROOM4Q9ULL8 1493 aa39.99■■■■□ 3.99
SMG8-204ENST00000580498 EIF4G1Q04637 1599 aaKnown RBP39.29■■■■□ 3.88
SMG8-204ENST00000580498 CC2D2AQ9P2K1 1620 aa39.23■■■■□ 3.87
SMG8-204ENST00000580498 CECR2Q9BXF3 1484 aa39.07■■■■□ 3.85
SMG8-204ENST00000580498 SMARCA4P51532 1647 aa38.29■■■■□ 3.72
SMG8-204ENST00000580498 BAZ1AQ9NRL2 1556 aaPredicted RBP38.26■■■■□ 3.72
SMG8-204ENST00000580498 NCAPD3P42695 1498 aa38.22■■■■□ 3.71
SMG8-204ENST00000580498 SMARCA2P51531 1590 aa38.22■■■■□ 3.71
SMG8-204ENST00000580498 ATAD2BQ9ULI0 1458 aa38.16■■■■□ 3.7
SMG8-204ENST00000580498 HMGXB3Q12766 1538 aa38.04■■■■□ 3.68
SMG8-204ENST00000580498 BAZ1BQ9UIG0 1483 aaKnown RBP37.92■■■■□ 3.66
SMG8-204ENST00000580498 PEG3Q9GZU2 1588 aa37.9■■■■□ 3.66
SMG8-204ENST00000580498 MROH2BQ7Z745 1585 aa37.85■■■■□ 3.65
SMG8-204ENST00000580498 ERCC6Q03468 1493 aa37.58■■■■□ 3.61
SMG8-204ENST00000580498 WIZO95785 1651 aa37.46■■■■□ 3.59
SMG8-204ENST00000580498 LAMC3Q9Y6N6 1575 aa37.36■■■■□ 3.57
SMG8-204ENST00000580498 NESP48681 1621 aa37.35■■■■□ 3.57
SMG8-204ENST00000580498 RSF1Q96T23 1441 aaPredicted RBP37.3■■■■□ 3.56
SMG8-204ENST00000580498 CUX2O14529 1486 aa37.28■■■■□ 3.56
SMG8-204ENST00000580498 PDS5BQ9NTI5 1447 aa37.17■■■■□ 3.54
SMG8-204ENST00000580498 CADPSQ9ULU8 1353 aa37.12■■■■□ 3.53
SMG8-204ENST00000580498 TOP2AP11388 1531 aaKnown RBP37.1■■■■□ 3.53
SMG8-204ENST00000580498 KIF21AQ7Z4S6 1674 aa36.96■■■■□ 3.51
SMG8-204ENST00000580498 THOC2Q8NI27 1593 aaKnown RBP36.91■■■■□ 3.5
SMG8-204ENST00000580498 CFTRP13569 1480 aa36.78■■■■□ 3.48
SMG8-204ENST00000580498 MRC2Q9UBG0 1479 aa36.75■■■■□ 3.47
SMG8-204ENST00000580498 CEP164Q9UPV0 1460 aa36.75■■■■□ 3.47
SMG8-204ENST00000580498 FANCD2Q9BXW9 1451 aa36.7■■■■□ 3.47
SMG8-204ENST00000580498 CCDC88BA6NC98 1476 aa36.61■■■■□ 3.45
SMG8-204ENST00000580498 WDR62O43379 1518 aa36.59■■■■□ 3.45
SMG8-204ENST00000580498 PRDM2Q13029 1718 aa36.55■■■■□ 3.44
SMG8-204ENST00000580498 DNAJC5Q9H3Z4 198 aa36.53■■■■□ 3.44
SMG8-204ENST00000580498 URB2Q14146 1524 aaKnown RBP36.27■■■■□ 3.4
SMG8-204ENST00000580498 ABCC8Q09428 1581 aa36.16■■■■□ 3.38
SMG8-204ENST00000580498 SUPT5HO00267 1087 aaKnown RBP36.16■■■■□ 3.38
SMG8-204ENST00000580498 TOPBP1Q92547 1522 aa36.03■■■■□ 3.36
SMG8-204ENST00000580498 DNMBPQ6XZF7 1577 aa36■■■■□ 3.35
SMG8-204ENST00000580498 IFT140Q96RY7 1462 aa35.98■■■■□ 3.35
SMG8-204ENST00000580498 ZNF608Q9ULD9 1512 aaPredicted RBP35.71■■■■□ 3.31
SMG8-204ENST00000580498 POLA1P09884 1462 aaPredicted RBP35.69■■■■□ 3.3
SMG8-204ENST00000580498 OSCARQ8IYS5 282 aa35.68■■■■□ 3.3
SMG8-204ENST00000580498 EIF4G3O43432 1585 aaKnown RBP35.64■■■■□ 3.3
SMG8-204ENST00000580498 TARBP1Q13395 1621 aaKnown RBP35.63■■■■□ 3.29
SMG8-204ENST00000580498 SOGA1O94964 1423 aa35.6■■■■□ 3.29
SMG8-204ENST00000580498 CUX1P39880 1505 aa35.57■■■■□ 3.28
SMG8-204ENST00000580498 FGD5Q6ZNL6 1462 aa35.56■■■■□ 3.28
SMG8-204ENST00000580498 AQRO60306 1485 aaKnown RBP eCLIP35.5■■■■□ 3.27
SMG8-204ENST00000580498 RAD54L2Q9Y4B4 1467 aa35.5■■■■□ 3.27
SMG8-204ENST00000580498 WDR97A6NE52 1622 aa35.49■■■■□ 3.27
SMG8-204ENST00000580498 TDRD9Q8NDG6 1382 aaKnown RBP35.39■■■■□ 3.26
SMG8-204ENST00000580498 FBLN2P98095 1184 aa35.32■■■■□ 3.24
SMG8-204ENST00000580498 WRNQ14191 1432 aaPredicted RBP eCLIP35.28■■■■□ 3.24
SMG8-204ENST00000580498 CHD1O14646 1710 aa35.27■■■■□ 3.24
SMG8-204ENST00000580498 GRIN2BQ13224 1484 aa35.25■■■■□ 3.23
SMG8-204ENST00000580498 TRIM41Q8WV44 630 aa35.24■■■■□ 3.23
SMG8-204ENST00000580498 SNAPC4Q5SXM2 1469 aa35.22■■■■□ 3.23
SMG8-204ENST00000580498 MAGI1Q96QZ7 1491 aaPredicted RBP35.22■■■■□ 3.23
SMG8-204ENST00000580498 TOP2BQ02880 1626 aa35.21■■■■□ 3.23
SMG8-204ENST00000580498 ABCA10Q8WWZ4 1543 aa35.21■■■■□ 3.23
SMG8-204ENST00000580498 BIVM-ERCC5R4GMW8 1640 aa35.21■■■■□ 3.23
SMG8-204ENST00000580498 GAPVD1Q14C86 1478 aa35.19■■■■□ 3.22
SMG8-204ENST00000580498 CHMP7Q8WUX9 453 aaPredicted RBP35.16■■■■□ 3.22
SMG8-204ENST00000580498 PBRM1Q86U86 1689 aa35.13■■■■□ 3.21
SMG8-204ENST00000580498 SYNJ1O43426 1573 aa35.11■■■■□ 3.21
SMG8-204ENST00000580498 ABCA5Q8WWZ7 1642 aa35.07■■■■□ 3.21
SMG8-204ENST00000580498 SYNJ2O15056 1496 aa35.06■■■■□ 3.2
SMG8-204ENST00000580498 RIMBP3CA6NJZ7 1639 aa35.05■■■■□ 3.2
SMG8-204ENST00000580498 RIMBP3BA6NNM3 1639 aa35.05■■■■□ 3.2
SMG8-204ENST00000580498 RIMBP3Q9UFD9 1639 aa35.05■■■■□ 3.2
SMG8-204ENST00000580498 ARHGEF11O15085 1522 aa35.01■■■■□ 3.2
SMG8-204ENST00000580498 CLASP1Q7Z460 1538 aa34.83■■■■□ 3.17
SMG8-204ENST00000580498 ERICH3Q5RHP9 1530 aa34.82■■■■□ 3.16
SMG8-204ENST00000580498 ADAMTS12P58397 1594 aa34.79■■■■□ 3.16
SMG8-204ENST00000580498 FHAD1B1AJZ9 1412 aa34.78■■■■□ 3.16
SMG8-204ENST00000580498 CYB5RLQ6IPT4 315 aa34.76■■■■□ 3.16
SMG8-204ENST00000580498 GRIN2AQ12879 1464 aa34.76■■■■□ 3.15
SMG8-204ENST00000580498 ARAP1Q96P48 1450 aa34.65■■■■□ 3.14
SMG8-204ENST00000580498 KIF27Q86VH2 1401 aa34.64■■■■□ 3.14
SMG8-204ENST00000580498 NUP160Q12769 1436 aa34.58■■■■□ 3.13
SMG8-204ENST00000580498 CEP170Q5SW79 1584 aa34.53■■■■□ 3.12
SMG8-204ENST00000580498 CUL7Q14999 1698 aa34.47■■■■□ 3.11
SMG8-204ENST00000580498 IGF1RP08069 1367 aa34.4■■■■□ 3.1
SMG8-204ENST00000580498 SHROOM2Q13796 1616 aa34.36■■■■□ 3.09
SMG8-204ENST00000580498 TRHP20396 242 aaPredicted RBP34.3■■■■□ 3.08
SMG8-204ENST00000580498 JPH4Q96JJ6 628 aa34.29■■■■□ 3.08
SMG8-204ENST00000580498 CARMIL1Q5VZK9 1371 aa34.28■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms