RNA–Protein interactions for RNA: ENST00000580497.1

PMP22-207, Transcript of peripheral myelin protein 22, humanhuman

TSL 3

Gene PMP22, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMP22-207ENST00000580497 NISCHQ9Y2I1 1504 aa19.71■□□□□ 0.75
PMP22-207ENST00000580497 CCDC180Q9P1Z9 1646 aa17.39■□□□□ 0.38
PMP22-207ENST00000580497 ABCC9O60706 1549 aa16.64■□□□□ 0.25
PMP22-207ENST00000580497 ZCCHC6Q5VYS8 1495 aaKnown RBP16.49■□□□□ 0.23
PMP22-207ENST00000580497 DCAF1Q9Y4B6 1507 aa16.29■□□□□ 0.2
PMP22-207ENST00000580497 DCAF8L2P0C7V8 631 aa16.27■□□□□ 0.2
PMP22-207ENST00000580497 NACADO15069 1562 aa16.21■□□□□ 0.18
PMP22-207ENST00000580497 MYO15BQ96JP2 1530 aa16.2■□□□□ 0.18
PMP22-207ENST00000580497 RB1CC1Q8TDY2 1594 aa16.15■□□□□ 0.18
PMP22-207ENST00000580497 UNC13AQ9UPW8 1703 aa15.96■□□□□ 0.15
PMP22-207ENST00000580497 SCRIBQ14160 1630 aa15.92■□□□□ 0.14
PMP22-207ENST00000580497 SHROOM4Q9ULL8 1493 aa15.82■□□□□ 0.12
PMP22-207ENST00000580497 BICRAQ9NZM4 1560 aa15.73■□□□□ 0.11
PMP22-207ENST00000580497 PABPN1Q86U42 306 aaKnown RBP eCLIP15.6■□□□□ 0.09
PMP22-207ENST00000580497 CECR2Q9BXF3 1484 aa15.34■□□□□ 0.05
PMP22-207ENST00000580497 SMARCA4P51532 1647 aa15.25■□□□□ 0.03
PMP22-207ENST00000580497 EIF4G1Q04637 1599 aaKnown RBP15.24■□□□□ 0.03
PMP22-207ENST00000580497 BAZ1AQ9NRL2 1556 aaPredicted RBP15.24■□□□□ 0.03
PMP22-207ENST00000580497 MROH2BQ7Z745 1585 aa15.23■□□□□ 0.03
PMP22-207ENST00000580497 RSF1Q96T23 1441 aaPredicted RBP15.15■□□□□ 0.02
PMP22-207ENST00000580497 WIZO95785 1651 aa15.13■□□□□ 0.01
PMP22-207ENST00000580497 CC2D2AQ9P2K1 1620 aa15.1■□□□□ 0.01
PMP22-207ENST00000580497 PEG3Q9GZU2 1588 aa15.07■□□□□ 0
PMP22-207ENST00000580497 ATAD2BQ9ULI0 1458 aa15.02■□□□□ -0
PMP22-207ENST00000580497 SUPT5HO00267 1087 aaKnown RBP15.01□□□□□ -0.01
PMP22-207ENST00000580497 SMARCA2P51531 1590 aa15.01□□□□□ -0.01
PMP22-207ENST00000580497 DNAJC5BQ9UF47 199 aa14.95□□□□□ -0.02
PMP22-207ENST00000580497 NCAPD3P42695 1498 aa14.94□□□□□ -0.02
PMP22-207ENST00000580497 HMGXB3Q12766 1538 aa14.92□□□□□ -0.02
PMP22-207ENST00000580497 TOP2AP11388 1531 aaKnown RBP14.92□□□□□ -0.02
PMP22-207ENST00000580497 BAZ1BQ9UIG0 1483 aaKnown RBP14.91□□□□□ -0.02
PMP22-207ENST00000580497 CCDC88BA6NC98 1476 aa14.75□□□□□ -0.05
PMP22-207ENST00000580497 PRDM2Q13029 1718 aa14.58□□□□□ -0.08
PMP22-207ENST00000580497 NESP48681 1621 aa14.55□□□□□ -0.08
PMP22-207ENST00000580497 CFTRP13569 1480 aa14.52□□□□□ -0.08
PMP22-207ENST00000580497 LAMC3Q9Y6N6 1575 aa14.51□□□□□ -0.09
PMP22-207ENST00000580497 CADPSQ9ULU8 1353 aa14.5□□□□□ -0.09
PMP22-207ENST00000580497 KIF21AQ7Z4S6 1674 aa14.44□□□□□ -0.1
PMP22-207ENST00000580497 ABCC8Q09428 1581 aa14.37□□□□□ -0.11
PMP22-207ENST00000580497 FANCD2Q9BXW9 1451 aa14.37□□□□□ -0.11
PMP22-207ENST00000580497 PDS5BQ9NTI5 1447 aa14.34□□□□□ -0.11
PMP22-207ENST00000580497 CEP164Q9UPV0 1460 aa14.31□□□□□ -0.12
PMP22-207ENST00000580497 SYNJ1O43426 1573 aa14.28□□□□□ -0.12
PMP22-207ENST00000580497 THOC2Q8NI27 1593 aaKnown RBP14.26□□□□□ -0.13
PMP22-207ENST00000580497 CUX1P39880 1505 aa14.26□□□□□ -0.13
PMP22-207ENST00000580497 BIVM-ERCC5R4GMW8 1640 aa14.26□□□□□ -0.13
PMP22-207ENST00000580497 ERCC6Q03468 1493 aa14.25□□□□□ -0.13
PMP22-207ENST00000580497 URB2Q14146 1524 aaKnown RBP14.25□□□□□ -0.13
PMP22-207ENST00000580497 WRNQ14191 1432 aaPredicted RBP eCLIP14.24□□□□□ -0.13
PMP22-207ENST00000580497 CHIC1Q5VXU3 224 aa14.24□□□□□ -0.13
PMP22-207ENST00000580497 TOP2BQ02880 1626 aa14.23□□□□□ -0.13
PMP22-207ENST00000580497 DNMBPQ6XZF7 1577 aa14.22□□□□□ -0.13
PMP22-207ENST00000580497 MRC2Q9UBG0 1479 aa14.22□□□□□ -0.13
PMP22-207ENST00000580497 TOPBP1Q92547 1522 aa14.2□□□□□ -0.14
PMP22-207ENST00000580497 WDR62O43379 1518 aa14.19□□□□□ -0.14
PMP22-207ENST00000580497 TRIM41Q8WV44 630 aa14.14□□□□□ -0.15
PMP22-207ENST00000580497 FGD5Q6ZNL6 1462 aa14.13□□□□□ -0.15
PMP22-207ENST00000580497 POLA1P09884 1462 aaPredicted RBP14.1□□□□□ -0.15
PMP22-207ENST00000580497 WDR97A6NE52 1622 aa14.08□□□□□ -0.15
PMP22-207ENST00000580497 TARBP1Q13395 1621 aaKnown RBP14.07□□□□□ -0.16
PMP22-207ENST00000580497 CUX2O14529 1486 aa14.06□□□□□ -0.16
PMP22-207ENST00000580497 RAD54L2Q9Y4B4 1467 aa14.06□□□□□ -0.16
PMP22-207ENST00000580497 SOGA1O94964 1423 aa14.02□□□□□ -0.16
PMP22-207ENST00000580497 RUSC2Q8N2Y8 1516 aa14□□□□□ -0.17
PMP22-207ENST00000580497 ABCA10Q8WWZ4 1543 aa13.98□□□□□ -0.17
PMP22-207ENST00000580497 IFT140Q96RY7 1462 aa13.98□□□□□ -0.17
PMP22-207ENST00000580497 ABCA5Q8WWZ7 1642 aa13.96□□□□□ -0.17
PMP22-207ENST00000580497 ZNF608Q9ULD9 1512 aaPredicted RBP13.95□□□□□ -0.18
PMP22-207ENST00000580497 PBRM1Q86U86 1689 aa13.94□□□□□ -0.18
PMP22-207ENST00000580497 EIF4G3O43432 1585 aaKnown RBP13.93□□□□□ -0.18
PMP22-207ENST00000580497 TDRD9Q8NDG6 1382 aaKnown RBP13.91□□□□□ -0.18
PMP22-207ENST00000580497 KIF27Q86VH2 1401 aa13.9□□□□□ -0.19
PMP22-207ENST00000580497 AQRO60306 1485 aaKnown RBP eCLIP13.89□□□□□ -0.19
PMP22-207ENST00000580497 FAM9AQ8IZU1 332 aaPredicted RBP13.89□□□□□ -0.19
PMP22-207ENST00000580497 GAPVD1Q14C86 1478 aa13.88□□□□□ -0.19
PMP22-207ENST00000580497 EEA1Q15075 1411 aa13.86□□□□□ -0.19
PMP22-207ENST00000580497 ERICH3Q5RHP9 1530 aa13.83□□□□□ -0.2
PMP22-207ENST00000580497 IGF1RP08069 1367 aa13.82□□□□□ -0.2
PMP22-207ENST00000580497 CUL7Q14999 1698 aa13.81□□□□□ -0.2
PMP22-207ENST00000580497 GRIN2BQ13224 1484 aa13.8□□□□□ -0.2
PMP22-207ENST00000580497 CSRNP3Q8WYN3 585 aa13.8□□□□□ -0.2
PMP22-207ENST00000580497 ADAMTS12P58397 1594 aa13.79□□□□□ -0.2
PMP22-207ENST00000580497 SNAPC4Q5SXM2 1469 aa13.78□□□□□ -0.2
PMP22-207ENST00000580497 KIF21BO75037 1637 aa13.78□□□□□ -0.2
PMP22-207ENST00000580497 PRXQ9BXM0 1461 aa13.75□□□□□ -0.21
PMP22-207ENST00000580497 CHD1O14646 1710 aa13.74□□□□□ -0.21
PMP22-207ENST00000580497 CARMIL1Q5VZK9 1371 aa13.73□□□□□ -0.21
PMP22-207ENST00000580497 MAGI1Q96QZ7 1491 aaPredicted RBP13.73□□□□□ -0.21
PMP22-207ENST00000580497 RAPGEF2Q9Y4G8 1499 aa13.72□□□□□ -0.21
PMP22-207ENST00000580497 EHMT2Q96KQ7 1210 aa13.71□□□□□ -0.21
PMP22-207ENST00000580497 FHAD1B1AJZ9 1412 aa13.71□□□□□ -0.22
PMP22-207ENST00000580497 LOC105371045A0A1W2PR82 267 aa13.69□□□□□ -0.22
PMP22-207ENST00000580497 SYNJ2O15056 1496 aa13.68□□□□□ -0.22
PMP22-207ENST00000580497 GOLGA3Q08378 1498 aa13.67□□□□□ -0.22
PMP22-207ENST00000580497 CTTNBP2Q8WZ74 1663 aa13.67□□□□□ -0.22
PMP22-207ENST00000580497 GRIN2AQ12879 1464 aa13.66□□□□□ -0.22
PMP22-207ENST00000580497 CEP170Q5SW79 1584 aa13.62□□□□□ -0.23
PMP22-207ENST00000580497 CHMP7Q8WUX9 453 aaPredicted RBP13.6□□□□□ -0.23
PMP22-207ENST00000580497 FBLN2P98095 1184 aa13.59□□□□□ -0.23
PMP22-207ENST00000580497 NUP160Q12769 1436 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms