RNA–Protein interactions for RNA: ENST00000580315.1

CDC42EP4-205, Transcript of CDC42 effector protein 4, humanhuman

TSL 2

Gene CDC42EP4, Length 1,022 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4-205ENST00000580315 NISCHQ9Y2I1 1504 aa61.09■■■■■ 7.37
CDC42EP4-205ENST00000580315 ABCC9O60706 1549 aa55.09■■■■■ 6.41
CDC42EP4-205ENST00000580315 CCDC180Q9P1Z9 1646 aa54.81■■■■■ 6.37
CDC42EP4-205ENST00000580315 RB1CC1Q8TDY2 1594 aa52.31■■■■■ 5.96
CDC42EP4-205ENST00000580315 NACADO15069 1562 aa51.92■■■■■ 5.9
CDC42EP4-205ENST00000580315 DNAJC5BQ9UF47 199 aa51.92■■■■■ 5.9
CDC42EP4-205ENST00000580315 DCAF8L2P0C7V8 631 aa51.7■■■■■ 5.87
CDC42EP4-205ENST00000580315 PABPN1Q86U42 306 aaKnown RBP eCLIP51.31■■■■■ 5.8
CDC42EP4-205ENST00000580315 MYO15BQ96JP2 1530 aa51.17■■■■■ 5.78
CDC42EP4-205ENST00000580315 UNC13AQ9UPW8 1703 aa51.06■■■■■ 5.76
CDC42EP4-205ENST00000580315 BICRAQ9NZM4 1560 aa50.82■■■■■ 5.73
CDC42EP4-205ENST00000580315 ZCCHC6Q5VYS8 1495 aaKnown RBP50.58■■■■■ 5.69
CDC42EP4-205ENST00000580315 DCAF1Q9Y4B6 1507 aa50.44■■■■■ 5.67
CDC42EP4-205ENST00000580315 SHROOM4Q9ULL8 1493 aa50.11■■■■■ 5.61
CDC42EP4-205ENST00000580315 SCRIBQ14160 1630 aa49.97■■■■■ 5.59
CDC42EP4-205ENST00000580315 CC2D2AQ9P2K1 1620 aa49.72■■■■■ 5.55
CDC42EP4-205ENST00000580315 CECR2Q9BXF3 1484 aa49.65■■■■■ 5.54
CDC42EP4-205ENST00000580315 EIF4G1Q04637 1599 aaKnown RBP49.58■■■■■ 5.53
CDC42EP4-205ENST00000580315 NCAPD3P42695 1498 aa47.99■■■■■ 5.27
CDC42EP4-205ENST00000580315 DNAJC5Q9H3Z4 198 aa47.81■■■■■ 5.24
CDC42EP4-205ENST00000580315 ATAD2BQ9ULI0 1458 aa47.8■■■■■ 5.24
CDC42EP4-205ENST00000580315 SMARCA4P51532 1647 aa47.66■■■■■ 5.22
CDC42EP4-205ENST00000580315 SMARCA2P51531 1590 aa47.62■■■■■ 5.21
CDC42EP4-205ENST00000580315 ERCC6Q03468 1493 aa47.57■■■■■ 5.21
CDC42EP4-205ENST00000580315 HMGXB3Q12766 1538 aa47.56■■■■■ 5.2
CDC42EP4-205ENST00000580315 CUX2O14529 1486 aa47.54■■■■■ 5.2
CDC42EP4-205ENST00000580315 BAZ1AQ9NRL2 1556 aaPredicted RBP47.41■■■■■ 5.18
CDC42EP4-205ENST00000580315 BAZ1BQ9UIG0 1483 aaKnown RBP47.31■■■■■ 5.16
CDC42EP4-205ENST00000580315 NESP48681 1621 aa47.27■■■■■ 5.16
CDC42EP4-205ENST00000580315 PEG3Q9GZU2 1588 aa47.21■■■■■ 5.15
CDC42EP4-205ENST00000580315 MROH2BQ7Z745 1585 aa47.07■■■■■ 5.13
CDC42EP4-205ENST00000580315 LAMC3Q9Y6N6 1575 aa46.88■■■■■ 5.1
CDC42EP4-205ENST00000580315 THOC2Q8NI27 1593 aaKnown RBP46.77■■■■■ 5.08
CDC42EP4-205ENST00000580315 PDS5BQ9NTI5 1447 aa46.66■■■■■ 5.06
CDC42EP4-205ENST00000580315 KIF21AQ7Z4S6 1674 aa46.58■■■■■ 5.05
CDC42EP4-205ENST00000580315 CADPSQ9ULU8 1353 aa46.53■■■■■ 5.04
CDC42EP4-205ENST00000580315 WIZO95785 1651 aa46.46■■■■■ 5.03
CDC42EP4-205ENST00000580315 MRC2Q9UBG0 1479 aa46.25■■■■■ 4.99
CDC42EP4-205ENST00000580315 WDR62O43379 1518 aa46.13■■■■■ 4.97
CDC42EP4-205ENST00000580315 RSF1Q96T23 1441 aaPredicted RBP46.06■■■■■ 4.96
CDC42EP4-205ENST00000580315 CEP164Q9UPV0 1460 aa46.02■■■■■ 4.96
CDC42EP4-205ENST00000580315 FANCD2Q9BXW9 1451 aa45.98■■■■■ 4.95
CDC42EP4-205ENST00000580315 CFTRP13569 1480 aa45.94■■■■■ 4.95
CDC42EP4-205ENST00000580315 TOP2AP11388 1531 aaKnown RBP45.87■■■■■ 4.93
CDC42EP4-205ENST00000580315 TRIM41Q8WV44 630 aa45.61■■■■■ 4.89
CDC42EP4-205ENST00000580315 URB2Q14146 1524 aaKnown RBP45.61■■■■■ 4.89
CDC42EP4-205ENST00000580315 OSCARQ8IYS5 282 aa45.41■■■■■ 4.86
CDC42EP4-205ENST00000580315 CCDC88BA6NC98 1476 aa45.4■■■■■ 4.86
CDC42EP4-205ENST00000580315 PRDM2Q13029 1718 aa45.32■■■■■ 4.84
CDC42EP4-205ENST00000580315 IFT140Q96RY7 1462 aa45.13■■■■■ 4.82
CDC42EP4-205ENST00000580315 ZNF608Q9ULD9 1512 aaPredicted RBP45.09■■■■■ 4.81
CDC42EP4-205ENST00000580315 TOPBP1Q92547 1522 aa45.08■■■■■ 4.81
CDC42EP4-205ENST00000580315 ABCC8Q09428 1581 aa44.96■■■■■ 4.79
CDC42EP4-205ENST00000580315 DNMBPQ6XZF7 1577 aa44.86■■■■■ 4.77
CDC42EP4-205ENST00000580315 EIF4G3O43432 1585 aaKnown RBP44.77■■■■■ 4.76
CDC42EP4-205ENST00000580315 RIMBP3CA6NJZ7 1639 aa44.75■■■■■ 4.75
CDC42EP4-205ENST00000580315 RIMBP3BA6NNM3 1639 aa44.75■■■■■ 4.75
CDC42EP4-205ENST00000580315 RIMBP3Q9UFD9 1639 aa44.75■■■■■ 4.75
CDC42EP4-205ENST00000580315 SUPT5HO00267 1087 aaKnown RBP44.73■■■■■ 4.75
CDC42EP4-205ENST00000580315 AQRO60306 1485 aaKnown RBP eCLIP44.67■■■■■ 4.74
CDC42EP4-205ENST00000580315 TARBP1Q13395 1621 aaKnown RBP44.67■■■■■ 4.74
CDC42EP4-205ENST00000580315 ARHGEF11O15085 1522 aa44.62■■■■■ 4.73
CDC42EP4-205ENST00000580315 POLA1P09884 1462 aaPredicted RBP44.61■■■■■ 4.73
CDC42EP4-205ENST00000580315 RAD54L2Q9Y4B4 1467 aa44.47■■■■■ 4.71
CDC42EP4-205ENST00000580315 CHD1O14646 1710 aa44.44■■■■■ 4.7
CDC42EP4-205ENST00000580315 SOGA1O94964 1423 aa44.43■■■■■ 4.7
CDC42EP4-205ENST00000580315 FBLN2P98095 1184 aa44.43■■■■■ 4.7
CDC42EP4-205ENST00000580315 TDRD9Q8NDG6 1382 aaKnown RBP44.38■■■■■ 4.69
CDC42EP4-205ENST00000580315 CYB5RLQ6IPT4 315 aa44.36■■■■■ 4.69
CDC42EP4-205ENST00000580315 FGD5Q6ZNL6 1462 aa44.29■■■■■ 4.68
CDC42EP4-205ENST00000580315 CUX1P39880 1505 aa44.23■■■■■ 4.67
CDC42EP4-205ENST00000580315 SNAPC4Q5SXM2 1469 aa44.18■■■■■ 4.66
CDC42EP4-205ENST00000580315 WDR97A6NE52 1622 aa44.17■■■■■ 4.66
CDC42EP4-205ENST00000580315 ARAP1Q96P48 1450 aa44.17■■■■■ 4.66
CDC42EP4-205ENST00000580315 CHMP7Q8WUX9 453 aaPredicted RBP44.07■■■■■ 4.65
CDC42EP4-205ENST00000580315 MAGI1Q96QZ7 1491 aaPredicted RBP44.05■■■■■ 4.64
CDC42EP4-205ENST00000580315 GRIN2BQ13224 1484 aa44.04■■■■■ 4.64
CDC42EP4-205ENST00000580315 CLASP1Q7Z460 1538 aa43.99■■■■■ 4.63
CDC42EP4-205ENST00000580315 SYNJ1O43426 1573 aa43.92■■■■■ 4.62
CDC42EP4-205ENST00000580315 SYNJ2O15056 1496 aa43.92■■■■■ 4.62
CDC42EP4-205ENST00000580315 TRHP20396 242 aaPredicted RBP43.91■■■■■ 4.62
CDC42EP4-205ENST00000580315 GAPVD1Q14C86 1478 aa43.87■■■■■ 4.61
CDC42EP4-205ENST00000580315 ABCA10Q8WWZ4 1543 aa43.79■■■■■ 4.6
CDC42EP4-205ENST00000580315 PBRM1Q86U86 1689 aa43.76■■■■■ 4.6
CDC42EP4-205ENST00000580315 ABCA5Q8WWZ7 1642 aa43.7■■■■■ 4.59
CDC42EP4-205ENST00000580315 WRNQ14191 1432 aaPredicted RBP eCLIP43.6■■■■■ 4.57
CDC42EP4-205ENST00000580315 GRIN2AQ12879 1464 aa43.47■■■■■ 4.55
CDC42EP4-205ENST00000580315 TOP2BQ02880 1626 aa43.44■■■■■ 4.55
CDC42EP4-205ENST00000580315 BIVM-ERCC5R4GMW8 1640 aa43.42■■■■■ 4.54
CDC42EP4-205ENST00000580315 ADAMTS12P58397 1594 aa43.38■■■■■ 4.54
CDC42EP4-205ENST00000580315 NUP160Q12769 1436 aa43.35■■■■■ 4.53
CDC42EP4-205ENST00000580315 FHAD1B1AJZ9 1412 aa43.31■■■■■ 4.52
CDC42EP4-205ENST00000580315 CEP170Q5SW79 1584 aa43.31■■■■■ 4.52
CDC42EP4-205ENST00000580315 ERCC6L2Q5T890 1561 aa43.3■■■■■ 4.52
CDC42EP4-205ENST00000580315 ERICH3Q5RHP9 1530 aa43.22■■■■■ 4.51
CDC42EP4-205ENST00000580315 SHROOM2Q13796 1616 aa43.13■■■■■ 4.49
CDC42EP4-205ENST00000580315 PRG4Q92954 1404 aaPredicted RBP42.96■■■■■ 4.47
CDC42EP4-205ENST00000580315 JPH4Q96JJ6 628 aa42.95■■■■■ 4.47
CDC42EP4-205ENST00000580315 RUSC2Q8N2Y8 1516 aa42.77■■■■■ 4.44
CDC42EP4-205ENST00000580315 AEBP2Q6ZN18 517 aaPredicted RBP42.75■■■■■ 4.43
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms