RNA–Protein interactions for RNA: ENST00000580074.1

ERBB2-210, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 3

Gene ERBB2, Length 754 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-210ENST00000580074 NISCHQ9Y2I1 1504 aa28.74■■■□□ 2.19
ERBB2-210ENST00000580074 CCDC180Q9P1Z9 1646 aa25.83■■□□□ 1.73
ERBB2-210ENST00000580074 ABCC9O60706 1549 aa25.4■■□□□ 1.66
ERBB2-210ENST00000580074 RB1CC1Q8TDY2 1594 aa24.44■■□□□ 1.5
ERBB2-210ENST00000580074 NACADO15069 1562 aa24.32■■□□□ 1.48
ERBB2-210ENST00000580074 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
ERBB2-210ENST00000580074 DCAF8L2P0C7V8 631 aa24.08■■□□□ 1.45
ERBB2-210ENST00000580074 ZCCHC6Q5VYS8 1495 aaKnown RBP23.91■■□□□ 1.42
ERBB2-210ENST00000580074 DCAF1Q9Y4B6 1507 aa23.84■■□□□ 1.41
ERBB2-210ENST00000580074 UNC13AQ9UPW8 1703 aa23.77■■□□□ 1.4
ERBB2-210ENST00000580074 PABPN1Q86U42 306 aaKnown RBP eCLIP23.59■■□□□ 1.37
ERBB2-210ENST00000580074 BICRAQ9NZM4 1560 aa23.55■■□□□ 1.36
ERBB2-210ENST00000580074 SHROOM4Q9ULL8 1493 aa23.51■■□□□ 1.35
ERBB2-210ENST00000580074 SCRIBQ14160 1630 aa23.43■■□□□ 1.34
ERBB2-210ENST00000580074 DNAJC5BQ9UF47 199 aa23.39■■□□□ 1.33
ERBB2-210ENST00000580074 EIF4G1Q04637 1599 aaKnown RBP23.03■■□□□ 1.28
ERBB2-210ENST00000580074 CC2D2AQ9P2K1 1620 aa23■■□□□ 1.27
ERBB2-210ENST00000580074 CECR2Q9BXF3 1484 aa22.91■■□□□ 1.26
ERBB2-210ENST00000580074 SMARCA4P51532 1647 aa22.4■■□□□ 1.18
ERBB2-210ENST00000580074 SMARCA2P51531 1590 aa22.39■■□□□ 1.18
ERBB2-210ENST00000580074 BAZ1AQ9NRL2 1556 aaPredicted RBP22.38■■□□□ 1.17
ERBB2-210ENST00000580074 NCAPD3P42695 1498 aa22.37■■□□□ 1.17
ERBB2-210ENST00000580074 ATAD2BQ9ULI0 1458 aa22.31■■□□□ 1.16
ERBB2-210ENST00000580074 HMGXB3Q12766 1538 aa22.31■■□□□ 1.16
ERBB2-210ENST00000580074 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
ERBB2-210ENST00000580074 BAZ1BQ9UIG0 1483 aaKnown RBP22.18■■□□□ 1.14
ERBB2-210ENST00000580074 MROH2BQ7Z745 1585 aa22.08■■□□□ 1.13
ERBB2-210ENST00000580074 ERCC6Q03468 1493 aa22.03■■□□□ 1.12
ERBB2-210ENST00000580074 CUX2O14529 1486 aa21.92■■□□□ 1.1
ERBB2-210ENST00000580074 LAMC3Q9Y6N6 1575 aa21.91■■□□□ 1.1
ERBB2-210ENST00000580074 WIZO95785 1651 aa21.85■■□□□ 1.09
ERBB2-210ENST00000580074 NESP48681 1621 aa21.84■■□□□ 1.09
ERBB2-210ENST00000580074 PDS5BQ9NTI5 1447 aa21.76■■□□□ 1.07
ERBB2-210ENST00000580074 RSF1Q96T23 1441 aaPredicted RBP21.72■■□□□ 1.07
ERBB2-210ENST00000580074 TOP2AP11388 1531 aaKnown RBP21.7■■□□□ 1.06
ERBB2-210ENST00000580074 CADPSQ9ULU8 1353 aa21.69■■□□□ 1.06
ERBB2-210ENST00000580074 THOC2Q8NI27 1593 aaKnown RBP21.68■■□□□ 1.06
ERBB2-210ENST00000580074 KIF21AQ7Z4S6 1674 aa21.66■■□□□ 1.06
ERBB2-210ENST00000580074 MRC2Q9UBG0 1479 aa21.54■■□□□ 1.04
ERBB2-210ENST00000580074 CEP164Q9UPV0 1460 aa21.52■■□□□ 1.04
ERBB2-210ENST00000580074 CFTRP13569 1480 aa21.51■■□□□ 1.03
ERBB2-210ENST00000580074 WDR62O43379 1518 aa21.47■■□□□ 1.03
ERBB2-210ENST00000580074 FANCD2Q9BXW9 1451 aa21.46■■□□□ 1.03
ERBB2-210ENST00000580074 DNAJC5Q9H3Z4 198 aa21.46■■□□□ 1.03
ERBB2-210ENST00000580074 PRDM2Q13029 1718 aa21.44■■□□□ 1.02
ERBB2-210ENST00000580074 CCDC88BA6NC98 1476 aa21.34■■□□□ 1.01
ERBB2-210ENST00000580074 URB2Q14146 1524 aaKnown RBP21.21■□□□□ 0.99
ERBB2-210ENST00000580074 ABCC8Q09428 1581 aa21.17■□□□□ 0.98
ERBB2-210ENST00000580074 IFT140Q96RY7 1462 aa21.08■□□□□ 0.97
ERBB2-210ENST00000580074 DNMBPQ6XZF7 1577 aa21.08■□□□□ 0.97
ERBB2-210ENST00000580074 TOPBP1Q92547 1522 aa21.08■□□□□ 0.96
ERBB2-210ENST00000580074 SUPT5HO00267 1087 aaKnown RBP20.93■□□□□ 0.94
ERBB2-210ENST00000580074 EIF4G3O43432 1585 aaKnown RBP20.89■□□□□ 0.94
ERBB2-210ENST00000580074 OSCARQ8IYS5 282 aa20.88■□□□□ 0.93
ERBB2-210ENST00000580074 ZNF608Q9ULD9 1512 aaPredicted RBP20.87■□□□□ 0.93
ERBB2-210ENST00000580074 POLA1P09884 1462 aaPredicted RBP20.87■□□□□ 0.93
ERBB2-210ENST00000580074 TARBP1Q13395 1621 aaKnown RBP20.86■□□□□ 0.93
ERBB2-210ENST00000580074 WDR97A6NE52 1622 aa20.84■□□□□ 0.93
ERBB2-210ENST00000580074 FGD5Q6ZNL6 1462 aa20.79■□□□□ 0.92
ERBB2-210ENST00000580074 SOGA1O94964 1423 aa20.78■□□□□ 0.92
ERBB2-210ENST00000580074 CUX1P39880 1505 aa20.76■□□□□ 0.91
ERBB2-210ENST00000580074 AQRO60306 1485 aaKnown RBP eCLIP20.72■□□□□ 0.915e-8■■■■■ 33.5
ERBB2-210ENST00000580074 RAD54L2Q9Y4B4 1467 aa20.71■□□□□ 0.91
ERBB2-210ENST00000580074 CHD1O14646 1710 aa20.68■□□□□ 0.9
ERBB2-210ENST00000580074 TDRD9Q8NDG6 1382 aaKnown RBP20.64■□□□□ 0.89
ERBB2-210ENST00000580074 GRIN2BQ13224 1484 aa20.63■□□□□ 0.89
ERBB2-210ENST00000580074 MAGI1Q96QZ7 1491 aaPredicted RBP20.63■□□□□ 0.89
ERBB2-210ENST00000580074 TRIM41Q8WV44 630 aa20.63■□□□□ 0.89
ERBB2-210ENST00000580074 SNAPC4Q5SXM2 1469 aa20.61■□□□□ 0.89
ERBB2-210ENST00000580074 ABCA10Q8WWZ4 1543 aa20.59■□□□□ 0.89
ERBB2-210ENST00000580074 FBLN2P98095 1184 aa20.59■□□□□ 0.89
ERBB2-210ENST00000580074 BIVM-ERCC5R4GMW8 1640 aa20.59■□□□□ 0.89
ERBB2-210ENST00000580074 PBRM1Q86U86 1689 aa20.58■□□□□ 0.89
ERBB2-210ENST00000580074 RIMBP3CA6NJZ7 1639 aa20.58■□□□□ 0.89
ERBB2-210ENST00000580074 RIMBP3BA6NNM3 1639 aa20.58■□□□□ 0.89
ERBB2-210ENST00000580074 TOP2BQ02880 1626 aa20.58■□□□□ 0.89
ERBB2-210ENST00000580074 RIMBP3Q9UFD9 1639 aa20.58■□□□□ 0.89
ERBB2-210ENST00000580074 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.88
ERBB2-210ENST00000580074 GAPVD1Q14C86 1478 aa20.56■□□□□ 0.88
ERBB2-210ENST00000580074 ARHGEF11O15085 1522 aa20.55■□□□□ 0.88
ERBB2-210ENST00000580074 SYNJ1O43426 1573 aa20.55■□□□□ 0.88
ERBB2-210ENST00000580074 ABCA5Q8WWZ7 1642 aa20.54■□□□□ 0.88
ERBB2-210ENST00000580074 SYNJ2O15056 1496 aa20.53■□□□□ 0.88
ERBB2-210ENST00000580074 CHMP7Q8WUX9 453 aaPredicted RBP20.52■□□□□ 0.88
ERBB2-210ENST00000580074 CLASP1Q7Z460 1538 aa20.43■□□□□ 0.86
ERBB2-210ENST00000580074 ADAMTS12P58397 1594 aa20.38■□□□□ 0.85
ERBB2-210ENST00000580074 ERICH3Q5RHP9 1530 aa20.37■□□□□ 0.85
ERBB2-210ENST00000580074 GRIN2AQ12879 1464 aa20.35■□□□□ 0.85
ERBB2-210ENST00000580074 FHAD1B1AJZ9 1412 aa20.34■□□□□ 0.85
ERBB2-210ENST00000580074 ARAP1Q96P48 1450 aa20.33■□□□□ 0.85
ERBB2-210ENST00000580074 CYB5RLQ6IPT4 315 aa20.31■□□□□ 0.84
ERBB2-210ENST00000580074 NUP160Q12769 1436 aa20.24■□□□□ 0.83
ERBB2-210ENST00000580074 CEP170Q5SW79 1584 aa20.22■□□□□ 0.83
ERBB2-210ENST00000580074 KIF27Q86VH2 1401 aa20.21■□□□□ 0.83
ERBB2-210ENST00000580074 CUL7Q14999 1698 aa20.19■□□□□ 0.82
ERBB2-210ENST00000580074 SHROOM2Q13796 1616 aa20.15■□□□□ 0.82
ERBB2-210ENST00000580074 RUSC2Q8N2Y8 1516 aa20.09■□□□□ 0.81
ERBB2-210ENST00000580074 TRHP20396 242 aaPredicted RBP20.07■□□□□ 0.8
ERBB2-210ENST00000580074 IGF1RP08069 1367 aa20.03■□□□□ 0.8
ERBB2-210ENST00000580074 ERCC6L2Q5T890 1561 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 187.9 ms