RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 NISCHQ9Y2I1 1504 aa24.05■■□□□ 1.44
SMARCD2-208ENST00000580054 ABCC9O60706 1549 aa22.25■■□□□ 1.15
SMARCD2-208ENST00000580054 CCDC180Q9P1Z9 1646 aa21.81■■□□□ 1.08
SMARCD2-208ENST00000580054 DNAJC5BQ9UF47 199 aa21.25■□□□□ 0.99
SMARCD2-208ENST00000580054 RB1CC1Q8TDY2 1594 aa20.94■□□□□ 0.94
SMARCD2-208ENST00000580054 NACADO15069 1562 aa20.68■□□□□ 0.9
SMARCD2-208ENST00000580054 PABPN1Q86U42 306 aaKnown RBP eCLIP20.61■□□□□ 0.89
SMARCD2-208ENST00000580054 UNC13AQ9UPW8 1703 aa20.61■□□□□ 0.89
SMARCD2-208ENST00000580054 DCAF8L2P0C7V8 631 aa20.43■□□□□ 0.86
SMARCD2-208ENST00000580054 BICRAQ9NZM4 1560 aa20.42■□□□□ 0.86
SMARCD2-208ENST00000580054 MYO15BQ96JP2 1530 aa20.21■□□□□ 0.83
SMARCD2-208ENST00000580054 CC2D2AQ9P2K1 1620 aa20.09■□□□□ 0.81
SMARCD2-208ENST00000580054 CECR2Q9BXF3 1484 aa20.06■□□□□ 0.8
SMARCD2-208ENST00000580054 SHROOM4Q9ULL8 1493 aa19.99■□□□□ 0.79
SMARCD2-208ENST00000580054 EIF4G1Q04637 1599 aaKnown RBP19.92■□□□□ 0.78
SMARCD2-208ENST00000580054 SCRIBQ14160 1630 aa19.89■□□□□ 0.77
SMARCD2-208ENST00000580054 ZCCHC6Q5VYS8 1495 aaKnown RBP19.86■□□□□ 0.77
SMARCD2-208ENST00000580054 DCAF1Q9Y4B6 1507 aa19.8■□□□□ 0.76
SMARCD2-208ENST00000580054 DNAJC5Q9H3Z4 198 aa19.76■□□□□ 0.75
SMARCD2-208ENST00000580054 CUX2O14529 1486 aa19.3■□□□□ 0.68
SMARCD2-208ENST00000580054 ERCC6Q03468 1493 aa19.2■□□□□ 0.66
SMARCD2-208ENST00000580054 NCAPD3P42695 1498 aa19.07■□□□□ 0.64
SMARCD2-208ENST00000580054 NESP48681 1621 aa19.01■□□□□ 0.63
SMARCD2-208ENST00000580054 ATAD2BQ9ULI0 1458 aa18.98■□□□□ 0.63
SMARCD2-208ENST00000580054 HMGXB3Q12766 1538 aa18.93■□□□□ 0.62
SMARCD2-208ENST00000580054 THOC2Q8NI27 1593 aaKnown RBP18.93■□□□□ 0.62
SMARCD2-208ENST00000580054 SMARCA4P51532 1647 aa18.9■□□□□ 0.62
SMARCD2-208ENST00000580054 SMARCA2P51531 1590 aa18.89■□□□□ 0.62
SMARCD2-208ENST00000580054 KIF21AQ7Z4S6 1674 aa18.79■□□□□ 0.6
SMARCD2-208ENST00000580054 BAZ1BQ9UIG0 1483 aaKnown RBP18.77■□□□□ 0.6
SMARCD2-208ENST00000580054 TRIM41Q8WV44 630 aa18.76■□□□□ 0.59
SMARCD2-208ENST00000580054 LAMC3Q9Y6N6 1575 aa18.74■□□□□ 0.59
SMARCD2-208ENST00000580054 BAZ1AQ9NRL2 1556 aaPredicted RBP18.69■□□□□ 0.58
SMARCD2-208ENST00000580054 PEG3Q9GZU2 1588 aa18.68■□□□□ 0.58
SMARCD2-208ENST00000580054 PDS5BQ9NTI5 1447 aa18.59■□□□□ 0.57
SMARCD2-208ENST00000580054 MROH2BQ7Z745 1585 aa18.56■□□□□ 0.56
SMARCD2-208ENST00000580054 MRC2Q9UBG0 1479 aa18.52■□□□□ 0.56
SMARCD2-208ENST00000580054 WDR62O43379 1518 aa18.52■□□□□ 0.56
SMARCD2-208ENST00000580054 CADPSQ9ULU8 1353 aa18.46■□□□□ 0.55
SMARCD2-208ENST00000580054 CEP164Q9UPV0 1460 aa18.36■□□□□ 0.53
SMARCD2-208ENST00000580054 WIZO95785 1651 aa18.35■□□□□ 0.53
SMARCD2-208ENST00000580054 FANCD2Q9BXW9 1451 aa18.3■□□□□ 0.52
SMARCD2-208ENST00000580054 OSCARQ8IYS5 282 aa18.28■□□□□ 0.52
SMARCD2-208ENST00000580054 RIMBP3CA6NJZ7 1639 aa18.24■□□□□ 0.51
SMARCD2-208ENST00000580054 RIMBP3BA6NNM3 1639 aa18.24■□□□□ 0.51
SMARCD2-208ENST00000580054 RIMBP3Q9UFD9 1639 aa18.24■□□□□ 0.51
SMARCD2-208ENST00000580054 URB2Q14146 1524 aaKnown RBP18.21■□□□□ 0.51
SMARCD2-208ENST00000580054 CFTRP13569 1480 aa18.19■□□□□ 0.5
SMARCD2-208ENST00000580054 ARHGEF11O15085 1522 aa18.11■□□□□ 0.49
SMARCD2-208ENST00000580054 PRDM2Q13029 1718 aa18.07■□□□□ 0.48
SMARCD2-208ENST00000580054 ZNF608Q9ULD9 1512 aaPredicted RBP18.07■□□□□ 0.48
SMARCD2-208ENST00000580054 TOP2AP11388 1531 aaKnown RBP18.04■□□□□ 0.48
SMARCD2-208ENST00000580054 IFT140Q96RY7 1462 aa17.99■□□□□ 0.47
SMARCD2-208ENST00000580054 EIF4G3O43432 1585 aaKnown RBP17.97■□□□□ 0.47
SMARCD2-208ENST00000580054 RSF1Q96T23 1441 aaPredicted RBP17.97■□□□□ 0.47
SMARCD2-208ENST00000580054 CHD1O14646 1710 aa17.95■□□□□ 0.46
SMARCD2-208ENST00000580054 CYB5RLQ6IPT4 315 aa17.92■□□□□ 0.46
SMARCD2-208ENST00000580054 TOPBP1Q92547 1522 aa17.92■□□□□ 0.46
SMARCD2-208ENST00000580054 ARAP1Q96P48 1450 aa17.91■□□□□ 0.46
SMARCD2-208ENST00000580054 TRHP20396 242 aaPredicted RBP17.86■□□□□ 0.45
SMARCD2-208ENST00000580054 CCDC88BA6NC98 1476 aa17.82■□□□□ 0.44
SMARCD2-208ENST00000580054 TARBP1Q13395 1621 aaKnown RBP17.82■□□□□ 0.44
SMARCD2-208ENST00000580054 DNMBPQ6XZF7 1577 aa17.82■□□□□ 0.44
SMARCD2-208ENST00000580054 AQRO60306 1485 aaKnown RBP eCLIP17.82■□□□□ 0.443e-8■■■■□ 23.4
SMARCD2-208ENST00000580054 ABCC8Q09428 1581 aa17.76■□□□□ 0.43
SMARCD2-208ENST00000580054 FBLN2P98095 1184 aa17.73■□□□□ 0.43
SMARCD2-208ENST00000580054 POLA1P09884 1462 aaPredicted RBP17.71■□□□□ 0.43
SMARCD2-208ENST00000580054 CLASP1Q7Z460 1538 aa17.68■□□□□ 0.42
SMARCD2-208ENST00000580054 RAD54L2Q9Y4B4 1467 aa17.66■□□□□ 0.42
SMARCD2-208ENST00000580054 SNAPC4Q5SXM2 1469 aa17.64■□□□□ 0.41
SMARCD2-208ENST00000580054 AEBP2Q6ZN18 517 aaPredicted RBP17.64■□□□□ 0.41
SMARCD2-208ENST00000580054 TDRD9Q8NDG6 1382 aaKnown RBP17.62■□□□□ 0.41
SMARCD2-208ENST00000580054 SYNJ1O43426 1573 aa17.59■□□□□ 0.41
SMARCD2-208ENST00000580054 SOGA1O94964 1423 aa17.56■□□□□ 0.4
SMARCD2-208ENST00000580054 WDR97A6NE52 1622 aa17.55■□□□□ 0.4
SMARCD2-208ENST00000580054 FGD5Q6ZNL6 1462 aa17.54■□□□□ 0.4
SMARCD2-208ENST00000580054 MAGI1Q96QZ7 1491 aaPredicted RBP17.53■□□□□ 0.4
SMARCD2-208ENST00000580054 CHMP7Q8WUX9 453 aaPredicted RBP17.5■□□□□ 0.39
SMARCD2-208ENST00000580054 PBRM1Q86U86 1689 aa17.48■□□□□ 0.39
SMARCD2-208ENST00000580054 SYNJ2O15056 1496 aa17.48■□□□□ 0.39
SMARCD2-208ENST00000580054 GRIN2BQ13224 1484 aa17.48■□□□□ 0.39
SMARCD2-208ENST00000580054 GAPVD1Q14C86 1478 aa17.48■□□□□ 0.39
SMARCD2-208ENST00000580054 CUX1P39880 1505 aa17.47■□□□□ 0.39
SMARCD2-208ENST00000580054 ERCC6L2Q5T890 1561 aa17.42■□□□□ 0.38
SMARCD2-208ENST00000580054 ABCA5Q8WWZ7 1642 aa17.36■□□□□ 0.37
SMARCD2-208ENST00000580054 KIF13AQ9H1H9 1805 aa17.33■□□□□ 0.36
SMARCD2-208ENST00000580054 CEP170Q5SW79 1584 aa17.3■□□□□ 0.36
SMARCD2-208ENST00000580054 ABCA10Q8WWZ4 1543 aa17.29■□□□□ 0.36
SMARCD2-208ENST00000580054 GRIN2AQ12879 1464 aa17.28■□□□□ 0.36
SMARCD2-208ENST00000580054 ADAMTS12P58397 1594 aa17.28■□□□□ 0.36
SMARCD2-208ENST00000580054 SHROOM2Q13796 1616 aa17.25■□□□□ 0.35
SMARCD2-208ENST00000580054 NUP160Q12769 1436 aa17.23■□□□□ 0.35
SMARCD2-208ENST00000580054 FHAD1B1AJZ9 1412 aa17.11■□□□□ 0.33
SMARCD2-208ENST00000580054 PRG4Q92954 1404 aaPredicted RBP17.09■□□□□ 0.33
SMARCD2-208ENST00000580054 BIVM-ERCC5R4GMW8 1640 aa17.08■□□□□ 0.32
SMARCD2-208ENST00000580054 DIP2BQ9P265 1576 aa17.08■□□□□ 0.32
SMARCD2-208ENST00000580054 WRNQ14191 1432 aaPredicted RBP eCLIP17.08■□□□□ 0.32
SMARCD2-208ENST00000580054 ABCC10Q5T3U5 1492 aa17.07■□□□□ 0.32
SMARCD2-208ENST00000580054 ERICH3Q5RHP9 1530 aa17.06■□□□□ 0.32
SMARCD2-208ENST00000580054 TOP2BQ02880 1626 aa17.05■□□□□ 0.32
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