RNA–Protein interactions for RNA: ENST00000579954.1

SSH2-209, Transcript of slingshot protein phosphatase 2, humanhuman

TSL 3 BASIC

Gene SSH2, Length 428 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH2-209ENST00000579954 NISCHQ9Y2I1 1504 aa21.98■■□□□ 1.11
SSH2-209ENST00000579954 CCDC180Q9P1Z9 1646 aa19.63■□□□□ 0.73
SSH2-209ENST00000579954 ABCC9O60706 1549 aa19.25■□□□□ 0.67
SSH2-209ENST00000579954 DCAF8L2P0C7V8 631 aa18.5■□□□□ 0.55
SSH2-209ENST00000579954 RB1CC1Q8TDY2 1594 aa18.49■□□□□ 0.55
SSH2-209ENST00000579954 NACADO15069 1562 aa18.41■□□□□ 0.54
SSH2-209ENST00000579954 ZCCHC6Q5VYS8 1495 aaKnown RBP18.3■□□□□ 0.52
SSH2-209ENST00000579954 MYO15BQ96JP2 1530 aa18.19■□□□□ 0.5
SSH2-209ENST00000579954 UNC13AQ9UPW8 1703 aa18.15■□□□□ 0.5
SSH2-209ENST00000579954 DCAF1Q9Y4B6 1507 aa18.13■□□□□ 0.49
SSH2-209ENST00000579954 SCRIBQ14160 1630 aa17.97■□□□□ 0.47
SSH2-209ENST00000579954 PABPN1Q86U42 306 aaKnown RBP eCLIP17.95■□□□□ 0.46
SSH2-209ENST00000579954 BICRAQ9NZM4 1560 aa17.87■□□□□ 0.45
SSH2-209ENST00000579954 SHROOM4Q9ULL8 1493 aa17.64■□□□□ 0.41
SSH2-209ENST00000579954 DNAJC5BQ9UF47 199 aa17.58■□□□□ 0.4
SSH2-209ENST00000579954 EIF4G1Q04637 1599 aaKnown RBP17.45■□□□□ 0.38
SSH2-209ENST00000579954 CC2D2AQ9P2K1 1620 aa17.42■□□□□ 0.38
SSH2-209ENST00000579954 CECR2Q9BXF3 1484 aa17.27■□□□□ 0.36
SSH2-209ENST00000579954 SMARCA4P51532 1647 aa17.12■□□□□ 0.33
SSH2-209ENST00000579954 AEBP2Q6ZN18 517 aaPredicted RBP17.11■□□□□ 0.33
SSH2-209ENST00000579954 BAZ1AQ9NRL2 1556 aaPredicted RBP17.07■□□□□ 0.32
SSH2-209ENST00000579954 SMARCA2P51531 1590 aa16.99■□□□□ 0.31
SSH2-209ENST00000579954 ATAD2BQ9ULI0 1458 aa16.97■□□□□ 0.31
SSH2-209ENST00000579954 MROH2BQ7Z745 1585 aa16.96■□□□□ 0.31
SSH2-209ENST00000579954 NCAPD3P42695 1498 aa16.93■□□□□ 0.3
SSH2-209ENST00000579954 HMGXB3Q12766 1538 aa16.9■□□□□ 0.3
SSH2-209ENST00000579954 BAZ1BQ9UIG0 1483 aaKnown RBP16.89■□□□□ 0.29
SSH2-209ENST00000579954 PEG3Q9GZU2 1588 aa16.86■□□□□ 0.29
SSH2-209ENST00000579954 WIZO95785 1651 aa16.85■□□□□ 0.29
SSH2-209ENST00000579954 RSF1Q96T23 1441 aaPredicted RBP16.7■□□□□ 0.26
SSH2-209ENST00000579954 ERCC6Q03468 1493 aa16.63■□□□□ 0.25
SSH2-209ENST00000579954 NESP48681 1621 aa16.63■□□□□ 0.25
SSH2-209ENST00000579954 TOP2AP11388 1531 aaKnown RBP16.61■□□□□ 0.25
SSH2-209ENST00000579954 LAMC3Q9Y6N6 1575 aa16.58■□□□□ 0.24
SSH2-209ENST00000579954 KIF21AQ7Z4S6 1674 aa16.51■□□□□ 0.23
SSH2-209ENST00000579954 CADPSQ9ULU8 1353 aa16.46■□□□□ 0.23
SSH2-209ENST00000579954 PDS5BQ9NTI5 1447 aa16.44■□□□□ 0.22
SSH2-209ENST00000579954 POTEDQ86YR6 584 aa16.42■□□□□ 0.22
SSH2-209ENST00000579954 PRDM2Q13029 1718 aa16.41■□□□□ 0.22
SSH2-209ENST00000579954 THOC2Q8NI27 1593 aaKnown RBP16.4■□□□□ 0.22
SSH2-209ENST00000579954 CCDC88BA6NC98 1476 aa16.39■□□□□ 0.21
SSH2-209ENST00000579954 CUX2O14529 1486 aa16.38■□□□□ 0.21
SSH2-209ENST00000579954 SUPT5HO00267 1087 aaKnown RBP16.37■□□□□ 0.21
SSH2-209ENST00000579954 CFTRP13569 1480 aa16.35■□□□□ 0.21
SSH2-209ENST00000579954 CEP164Q9UPV0 1460 aa16.34■□□□□ 0.21
SSH2-209ENST00000579954 FANCD2Q9BXW9 1451 aa16.32■□□□□ 0.2
SSH2-209ENST00000579954 MRC2Q9UBG0 1479 aa16.29■□□□□ 0.2
SSH2-209ENST00000579954 CHIC1Q5VXU3 224 aa16.23■□□□□ 0.19
SSH2-209ENST00000579954 WDR62O43379 1518 aa16.23■□□□□ 0.19
SSH2-209ENST00000579954 URB2Q14146 1524 aaKnown RBP16.14■□□□□ 0.18
SSH2-209ENST00000579954 DNMBPQ6XZF7 1577 aa16.06■□□□□ 0.16
SSH2-209ENST00000579954 TOPBP1Q92547 1522 aa16.05■□□□□ 0.16
SSH2-209ENST00000579954 ABCC8Q09428 1581 aa16.04■□□□□ 0.16
SSH2-209ENST00000579954 IFT140Q96RY7 1462 aa15.95■□□□□ 0.14
SSH2-209ENST00000579954 CUX1P39880 1505 aa15.93■□□□□ 0.14
SSH2-209ENST00000579954 POLA1P09884 1462 aaPredicted RBP15.91■□□□□ 0.14
SSH2-209ENST00000579954 ZNF608Q9ULD9 1512 aaPredicted RBP15.89■□□□□ 0.13
SSH2-209ENST00000579954 EIF4G3O43432 1585 aaKnown RBP15.89■□□□□ 0.13
SSH2-209ENST00000579954 FGD5Q6ZNL6 1462 aa15.89■□□□□ 0.13
SSH2-209ENST00000579954 TARBP1Q13395 1621 aaKnown RBP15.88■□□□□ 0.13
SSH2-209ENST00000579954 RAD54L2Q9Y4B4 1467 aa15.86■□□□□ 0.13
SSH2-209ENST00000579954 DNAJC5Q9H3Z4 198 aa15.86■□□□□ 0.13
SSH2-209ENST00000579954 SOGA1O94964 1423 aa15.85■□□□□ 0.13
SSH2-209ENST00000579954 BIVM-ERCC5R4GMW8 1640 aa15.81■□□□□ 0.12
SSH2-209ENST00000579954 AQRO60306 1485 aaKnown RBP eCLIP15.8■□□□□ 0.12
SSH2-209ENST00000579954 WRNQ14191 1432 aaPredicted RBP eCLIP15.8■□□□□ 0.12
SSH2-209ENST00000579954 WDR97A6NE52 1622 aa15.79■□□□□ 0.12
SSH2-209ENST00000579954 SYNJ1O43426 1573 aa15.79■□□□□ 0.12
SSH2-209ENST00000579954 TOP2BQ02880 1626 aa15.79■□□□□ 0.12
SSH2-209ENST00000579954 TDRD9Q8NDG6 1382 aaKnown RBP15.76■□□□□ 0.11
SSH2-209ENST00000579954 CHD1O14646 1710 aa15.76■□□□□ 0.11
SSH2-209ENST00000579954 PBRM1Q86U86 1689 aa15.76■□□□□ 0.11
SSH2-209ENST00000579954 FBLN2P98095 1184 aa15.7■□□□□ 0.1
SSH2-209ENST00000579954 ABCA10Q8WWZ4 1543 aa15.69■□□□□ 0.1
SSH2-209ENST00000579954 SNAPC4Q5SXM2 1469 aa15.69■□□□□ 0.1
SSH2-209ENST00000579954 ABCA5Q8WWZ7 1642 aa15.68■□□□□ 0.1
SSH2-209ENST00000579954 OSCARQ8IYS5 282 aa15.68■□□□□ 0.1
SSH2-209ENST00000579954 GAPVD1Q14C86 1478 aa15.67■□□□□ 0.1
SSH2-209ENST00000579954 GRIN2BQ13224 1484 aa15.66■□□□□ 0.1
SSH2-209ENST00000579954 MAGI1Q96QZ7 1491 aaPredicted RBP15.63■□□□□ 0.09
SSH2-209ENST00000579954 CHMP7Q8WUX9 453 aaPredicted RBP15.58■□□□□ 0.08
SSH2-209ENST00000579954 SYNJ2O15056 1496 aa15.57■□□□□ 0.08
SSH2-209ENST00000579954 ADAMTS12P58397 1594 aa15.56■□□□□ 0.08
SSH2-209ENST00000579954 RIMBP3CA6NJZ7 1639 aa15.52■□□□□ 0.08
SSH2-209ENST00000579954 RIMBP3BA6NNM3 1639 aa15.52■□□□□ 0.08
SSH2-209ENST00000579954 RIMBP3Q9UFD9 1639 aa15.52■□□□□ 0.08
SSH2-209ENST00000579954 ERICH3Q5RHP9 1530 aa15.52■□□□□ 0.07
SSH2-209ENST00000579954 TRIM41Q8WV44 630 aa15.49■□□□□ 0.07
SSH2-209ENST00000579954 GRIN2AQ12879 1464 aa15.47■□□□□ 0.07
SSH2-209ENST00000579954 KIF27Q86VH2 1401 aa15.47■□□□□ 0.07
SSH2-209ENST00000579954 ARHGEF11O15085 1522 aa15.47■□□□□ 0.07
SSH2-209ENST00000579954 FHAD1B1AJZ9 1412 aa15.46■□□□□ 0.07
SSH2-209ENST00000579954 CLASP1Q7Z460 1538 aa15.46■□□□□ 0.07
SSH2-209ENST00000579954 CUL7Q14999 1698 aa15.44■□□□□ 0.06
SSH2-209ENST00000579954 CEP170Q5SW79 1584 aa15.42■□□□□ 0.06
SSH2-209ENST00000579954 NUP160Q12769 1436 aa15.35■□□□□ 0.05
SSH2-209ENST00000579954 IGF1RP08069 1367 aa15.35■□□□□ 0.05
SSH2-209ENST00000579954 CYB5RLQ6IPT4 315 aa15.33■□□□□ 0.04
SSH2-209ENST00000579954 ARAP1Q96P48 1450 aa15.33■□□□□ 0.04
SSH2-209ENST00000579954 RUSC2Q8N2Y8 1516 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms